Wall clock time and date at job start Tue Mar 31 2020 22:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36537 * 120.09149 * 2 1 4 4 C 1.40718 * 118.24493 * 180.22261 * 3 2 1 5 5 C 1.40429 * 121.27954 * 179.79957 * 4 3 2 6 6 C 1.36135 * 119.64403 * 179.75998 * 5 4 3 7 7 C 1.39427 * 120.92107 * 359.95143 * 6 5 4 8 8 C 1.35991 * 121.09572 * 0.02929 * 7 6 5 9 9 C 1.40838 * 119.73179 * 359.97438 * 8 7 6 10 10 N 1.33244 * 120.99387 * 180.02562 * 9 8 7 11 11 C 1.31908 * 121.29944 * 179.97438 * 10 9 8 12 12 C 1.48270 * 119.23985 * 179.97438 * 11 10 9 13 13 O 1.21501 * 119.99601 * 104.27924 * 12 11 10 14 14 N 1.34770 * 119.99982 * 284.27717 * 12 11 10 15 15 C 1.46504 * 120.00130 * 4.93699 * 14 12 11 16 16 C 1.46503 * 120.00121 * 184.93897 * 14 12 11 17 17 C 1.53784 * 113.61526 * 219.13750 * 16 14 12 18 18 C 1.53949 * 87.02045 * 220.04569 * 17 16 14 19 19 N 1.46495 * 113.74686 * 139.94380 * 18 17 16 20 20 C 1.36935 * 119.99888 * 107.39920 * 19 18 17 21 21 H 1.07997 * 120.00708 * 0.02562 * 20 19 18 22 22 C 1.38818 * 119.99479 * 180.02562 * 20 19 18 23 23 N 1.31627 * 119.99690 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00426 * 0.02562 * 22 20 19 25 25 H 1.48503 * 109.46832 * 89.99734 * 24 22 20 26 26 H 1.48493 * 109.47436 * 209.99850 * 24 22 20 27 27 H 1.48495 * 109.46914 * 329.99951 * 24 22 20 28 28 C 1.53781 * 113.61549 * 121.52804 * 16 14 12 29 29 H 1.09001 * 109.46953 * 274.90843 * 1 2 3 30 30 H 1.08993 * 109.46984 * 34.91578 * 1 2 3 31 31 H 1.09005 * 109.46741 * 154.91446 * 1 2 3 32 32 H 1.08002 * 120.87770 * 359.75310 * 3 2 1 33 33 H 1.07992 * 120.17341 * 359.68766 * 5 4 3 34 34 H 1.07999 * 119.53478 * 180.02562 * 6 5 4 35 35 H 1.08003 * 119.45596 * 180.02562 * 7 6 5 36 36 H 1.07995 * 120.13802 * 180.02562 * 8 7 6 37 37 H 1.09000 * 109.46761 * 84.90935 * 15 14 12 38 38 H 1.09003 * 109.46905 * 204.90348 * 15 14 12 39 39 H 1.08995 * 109.47235 * 324.90735 * 15 14 12 40 40 H 1.09006 * 112.84755 * 350.33172 * 16 14 12 41 41 H 1.08994 * 113.61118 * 334.56574 * 17 16 14 42 42 H 1.09006 * 113.61324 * 105.46885 * 17 16 14 43 43 H 1.09002 * 113.53725 * 270.81672 * 18 17 16 44 44 H 0.97001 * 119.99835 * 287.40282 * 19 18 17 45 45 H 0.96996 * 119.99578 * 180.02562 * 23 22 20 46 46 H 1.09004 * 113.61445 * 254.52642 * 28 16 14 47 47 H 1.08989 * 113.61379 * 25.43705 * 28 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1916 1.1814 0.0000 4 6 3.5980 1.1360 -0.0048 5 6 4.3654 2.3121 -0.0093 6 6 5.7243 2.2294 -0.0089 7 6 6.3668 0.9920 -0.0032 8 6 5.6569 -0.1679 0.0017 9 6 4.2492 -0.1254 0.0014 10 7 3.5288 -1.2463 0.0066 11 6 2.2102 -1.2134 0.0069 12 6 1.4539 -2.4887 0.0122 13 8 0.9212 -2.8748 1.0337 14 7 1.3574 -3.2196 -1.1159 15 6 2.0882 -2.8111 -2.3182 16 6 0.5217 -4.4227 -1.1401 17 6 1.1367 -5.5840 -1.9390 18 6 -0.2809 -5.8628 -2.4709 19 7 -0.3181 -6.2227 -3.8904 20 6 -0.5763 -7.5150 -4.2626 21 1 -0.7529 -8.2688 -3.5097 22 6 -0.6110 -7.8560 -5.6078 23 7 -0.8597 -9.0981 -5.9655 24 14 -0.3049 -6.5524 -6.9102 25 1 1.1465 -6.4919 -7.2183 26 1 -1.0586 -6.8971 -8.1423 27 1 -0.7591 -5.2320 -6.4051 28 6 -0.5888 -4.3800 -2.2030 29 1 -0.3633 0.0879 1.0239 30 1 -0.3633 0.8426 -0.5882 31 1 -0.3633 -0.9308 -0.4357 32 1 1.6675 2.1257 -0.0040 33 1 3.8802 3.2768 -0.0142 34 1 6.3127 3.1350 -0.0120 35 1 7.4461 0.9540 -0.0026 36 1 6.1705 -1.1179 0.0066 37 1 3.1052 -3.2011 -2.2752 38 1 1.5849 -3.2056 -3.2009 39 1 2.1183 -1.7230 -2.3729 40 1 0.1682 -4.7124 -0.1505 41 1 1.8366 -5.2613 -2.7097 42 1 1.5339 -6.3828 -1.3126 43 1 -0.8536 -6.5475 -1.8454 44 1 -0.1598 -5.5456 -4.5668 45 1 -0.8836 -9.3365 -6.9054 46 1 -1.5827 -4.2083 -1.7895 47 1 -0.3615 -3.7277 -3.0460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999142126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:02 Heat of formation + Delta-G solvation = 41.676388 kcal Electronic energy + Delta-G solvation = -28689.587053 eV Core-core repulsion = 24837.626505 eV Total energy + Delta-G solvation = -3851.960548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.29970 -41.16756 -39.57772 -37.99748 -36.36774 -35.24150 -34.86703 -32.83594 -32.50614 -31.27659 -28.22491 -28.14237 -27.16732 -26.57501 -25.78005 -23.81331 -23.52295 -23.03767 -21.46044 -20.48908 -19.38330 -19.11342 -18.79928 -18.08850 -17.67343 -16.84108 -16.50212 -16.34782 -15.89782 -15.78713 -15.46858 -15.32976 -15.19009 -14.71854 -14.67686 -14.30563 -14.15428 -14.09995 -14.02085 -13.66970 -13.61445 -13.37269 -13.31532 -13.24885 -12.85967 -12.65999 -12.56223 -12.44833 -12.30470 -12.11430 -11.83100 -11.81007 -11.61067 -11.41359 -11.32082 -10.92510 -10.57467 -9.78311 -9.72978 -9.29881 -9.24199 -8.01679 -5.35824 -0.73747 -0.35366 0.94673 1.19774 1.38189 1.42714 1.49805 1.65782 1.87515 2.49342 2.90630 3.03477 3.27627 3.41421 3.57017 3.59756 3.66610 3.71089 3.74486 3.81002 4.01798 4.05782 4.11054 4.18668 4.19396 4.32200 4.38241 4.44654 4.48535 4.66469 4.67794 4.70085 4.75811 4.80600 4.83577 4.89874 4.99833 5.02208 5.05440 5.10031 5.12525 5.29780 5.37412 5.44635 5.48573 5.52407 5.77927 5.85801 6.15511 6.23140 6.63101 6.83715 7.07651 7.82864 8.03227 9.19754 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.017206 B = 0.002456 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.904627 B =11396.341151 C =11964.192262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.123 4.123 3 C -0.046 4.046 4 C -0.103 4.103 5 C -0.098 4.098 6 C -0.107 4.107 7 C -0.092 4.092 8 C -0.114 4.114 9 C 0.096 3.904 10 N -0.471 5.471 11 C 0.114 3.886 12 C 0.577 3.423 13 O -0.564 6.564 14 N -0.582 5.582 15 C 0.082 3.918 16 C 0.127 3.873 17 C -0.165 4.165 18 C 0.159 3.841 19 N -0.736 5.736 20 C -0.234 4.234 21 H 0.057 0.943 22 C -0.067 4.067 23 N -0.985 5.985 24 Si 0.957 3.043 25 H -0.278 1.278 26 H -0.298 1.298 27 H -0.247 1.247 28 C -0.145 4.145 29 H 0.081 0.919 30 H 0.105 0.895 31 H 0.051 0.949 32 H 0.185 0.815 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.132 0.868 37 H 0.061 0.939 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.086 0.914 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.368 0.632 45 H 0.257 0.743 46 H 0.082 0.918 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.261 32.659 11.983 36.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.126 4.126 3 C -0.072 4.072 4 C -0.105 4.105 5 C -0.116 4.116 6 C -0.125 4.125 7 C -0.111 4.111 8 C -0.133 4.133 9 C -0.027 4.027 10 N -0.181 5.181 11 C -0.041 4.041 12 C 0.363 3.637 13 O -0.442 6.442 14 N -0.312 5.312 15 C -0.060 4.060 16 C 0.023 3.977 17 C -0.206 4.206 18 C 0.049 3.951 19 N -0.377 5.377 20 C -0.365 4.365 21 H 0.075 0.925 22 C -0.258 4.258 23 N -0.635 5.635 24 Si 0.784 3.216 25 H -0.204 1.204 26 H -0.225 1.225 27 H -0.171 1.171 28 C -0.185 4.185 29 H 0.099 0.901 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.202 0.798 33 H 0.182 0.818 34 H 0.181 0.819 35 H 0.176 0.824 36 H 0.150 0.850 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.130 0.870 41 H 0.105 0.895 42 H 0.080 0.920 43 H 0.097 0.903 44 H 0.202 0.798 45 H 0.066 0.934 46 H 0.100 0.900 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 12.446 31.415 12.514 36.034 hybrid contribution -0.224 0.146 -0.871 0.911 sum 12.221 31.561 11.643 35.792 Atomic orbital electron populations 1.20827 0.88386 1.03745 1.03782 1.20607 0.98724 0.92080 1.01139 1.21713 0.92254 0.99004 0.94188 1.19251 0.94920 0.94801 1.01541 1.21389 0.94473 0.97304 0.98480 1.21451 0.94844 0.98935 0.97266 1.21325 1.01913 0.91501 0.96411 1.21024 0.90603 1.00595 1.01030 1.19273 0.95044 0.88066 1.00285 1.67826 1.06227 1.32099 1.11912 1.20993 0.90350 0.93419 0.99297 1.18309 0.79133 0.83059 0.83180 1.90758 1.49422 1.71181 1.32866 1.47780 1.46384 1.25321 1.11720 1.21826 0.96619 1.00623 0.86947 1.22434 0.91790 0.83870 0.99588 1.24170 1.00127 0.97025 0.99317 1.21586 0.94636 0.94424 0.84469 1.42619 1.85565 1.06692 1.02790 1.19091 1.38948 0.86365 0.92105 0.92544 1.25565 1.02473 0.98384 0.99373 1.69899 1.58069 1.19112 1.16419 0.85384 0.77869 0.79888 0.78497 1.20420 1.22502 1.17100 1.23796 0.98967 0.97263 0.98483 0.90063 0.87652 0.93022 0.79822 0.81788 0.81912 0.82450 0.85021 0.92075 0.89256 0.90916 0.87027 0.89549 0.91970 0.90320 0.79806 0.93381 0.89965 0.88963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.82 9.67 71.24 0.69 -1.13 16 2 C -0.12 -2.46 5.89 -19.77 -0.12 -2.58 16 3 C -0.05 -0.67 9.54 22.48 0.21 -0.45 16 4 C -0.10 -1.70 5.75 -21.22 -0.12 -1.82 16 5 C -0.10 -0.93 9.77 22.31 0.22 -0.71 16 6 C -0.11 -0.83 9.95 22.07 0.22 -0.61 16 7 C -0.09 -0.98 9.94 22.03 0.22 -0.76 16 8 C -0.11 -2.01 9.99 22.38 0.22 -1.78 16 9 C 0.10 2.14 6.61 40.49 0.27 2.40 16 10 N -0.47 -12.91 10.17 -177.76 -1.81 -14.72 16 11 C 0.11 3.04 4.70 42.29 0.20 3.24 16 12 C 0.58 17.76 5.61 86.91 0.49 18.25 16 13 O -0.56 -20.91 16.58 -3.72 -0.06 -20.97 16 14 N -0.58 -16.25 3.08 -822.55 -2.54 -18.78 16 15 C 0.08 1.91 8.86 127.77 1.13 3.05 16 16 C 0.13 3.74 4.22 45.52 0.19 3.94 16 17 C -0.17 -5.39 7.31 31.18 0.23 -5.16 16 18 C 0.16 5.83 4.48 45.58 0.20 6.04 16 19 N -0.74 -33.18 5.21 -320.17 -1.67 -34.85 16 20 C -0.23 -13.19 10.45 84.04 0.88 -12.31 16 21 H 0.06 3.51 8.06 -2.91 -0.02 3.49 16 22 C -0.07 -3.90 5.50 84.86 0.47 -3.44 16 23 N -0.98 -63.14 13.97 21.65 0.30 -62.83 16 24 Si 0.96 44.52 27.74 68.60 1.90 46.43 16 25 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 26 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 27 H -0.25 -10.11 6.52 99.48 0.65 -9.46 16 28 C -0.15 -4.21 7.35 31.12 0.23 -3.98 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.10 1.04 8.11 -2.39 -0.02 1.02 16 31 H 0.05 1.06 6.87 -2.38 -0.02 1.04 16 32 H 0.18 1.06 8.06 -2.91 -0.02 1.04 16 33 H 0.16 0.44 8.06 -2.91 -0.02 0.42 16 34 H 0.16 0.17 8.06 -2.91 -0.02 0.15 16 35 H 0.16 0.77 8.06 -2.91 -0.02 0.74 16 36 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 37 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.09 1.95 6.14 -2.39 -0.01 1.94 16 39 H 0.07 1.53 6.99 -2.39 -0.02 1.51 16 40 H 0.11 3.52 7.20 -2.38 -0.02 3.51 16 41 H 0.09 2.78 6.70 -2.39 -0.02 2.76 16 42 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 43 H 0.08 3.03 8.10 -2.39 -0.02 3.01 16 44 H 0.37 15.62 5.78 -92.71 -0.54 15.08 16 45 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 46 H 0.08 2.22 8.14 -2.38 -0.02 2.21 16 47 H 0.09 2.49 6.87 -2.39 -0.02 2.47 16 Total: -1.00 -78.35 385.04 2.36 -75.99 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.40 Total: 27.56 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: 5.83 Total: 2.17 kcal Atomic # 7 Polarization: -125.47 SS G_CDS: -5.71 Total: -131.18 kcal Atomic # 8 Polarization: -20.91 SS G_CDS: -0.06 Total: -20.97 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.90 Total: 46.43 kcal Total: -78.35 2.36 -75.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999142126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.665 kcal (2) G-P(sol) polarization free energy of solvation -78.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds