Wall clock time and date at job start Tue Mar 31 2020 22:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36615 * 120.91770 * 2 1 4 4 C 1.39267 * 119.90375 * 180.02562 * 3 2 1 5 5 N 1.31151 * 121.77352 * 359.71330 * 4 3 2 6 6 C 1.33624 * 121.39060 * 0.57516 * 5 4 3 7 7 C 1.40757 * 120.83800 * 179.71423 * 6 5 4 8 8 C 1.35699 * 120.10868 * 179.72242 * 7 6 5 9 9 C 1.40640 * 120.92950 * 0.02562 * 8 7 6 10 10 C 1.47761 * 119.80100 * 179.97438 * 9 8 7 11 11 O 1.21562 * 119.99951 * 129.17330 * 10 9 8 12 12 N 1.34777 * 120.00253 * 309.17056 * 10 9 8 13 13 C 1.46928 * 120.63161 * 183.78912 * 12 10 9 14 14 C 1.53190 * 108.77474 * 126.37170 * 13 12 10 15 15 C 1.53036 * 109.31763 * 54.63250 * 14 13 12 16 16 C 1.53041 * 109.53796 * 298.63702 * 15 14 13 17 17 H 1.09001 * 109.49567 * 301.38154 * 16 15 14 18 18 N 1.46495 * 109.49891 * 181.31765 * 16 15 14 19 19 C 1.36936 * 120.00151 * 155.00044 * 18 16 15 20 20 H 1.07996 * 120.00282 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00173 * 179.97438 * 19 18 16 22 22 N 1.31622 * 119.99899 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00149 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47099 * 59.99790 * 23 21 19 25 25 H 1.48500 * 109.47278 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47041 * 299.99769 * 23 21 19 27 27 C 1.46929 * 120.62807 * 3.50521 * 12 10 9 28 28 C 1.38537 * 120.39031 * 359.97039 * 9 8 7 29 29 C 1.40192 * 119.40688 * 0.04538 * 28 9 8 30 30 H 1.08997 * 109.47356 * 269.97681 * 1 2 3 31 31 H 1.09000 * 109.47347 * 29.98124 * 1 2 3 32 32 H 1.09001 * 109.47363 * 149.97895 * 1 2 3 33 33 H 1.07998 * 120.05002 * 0.04087 * 3 2 1 34 34 H 1.08006 * 119.11926 * 180.02562 * 4 3 2 35 35 H 1.07995 * 119.94917 * 359.70866 * 7 6 5 36 36 H 1.08004 * 119.53820 * 179.97438 * 8 7 6 37 37 H 1.09007 * 109.58034 * 246.15383 * 13 12 10 38 38 H 1.08996 * 109.58293 * 6.57605 * 13 12 10 39 39 H 1.09006 * 109.49612 * 174.58719 * 14 13 12 40 40 H 1.08998 * 109.49365 * 294.67653 * 14 13 12 41 41 H 1.09000 * 109.45749 * 58.65381 * 15 14 13 42 42 H 1.08994 * 109.46159 * 178.62894 * 15 14 13 43 43 H 0.97003 * 119.99836 * 334.99687 * 18 16 15 44 44 H 0.96998 * 119.99917 * 180.02562 * 22 21 19 45 45 H 1.08996 * 109.58511 * 353.42215 * 27 12 10 46 46 H 1.09005 * 109.58354 * 113.84378 * 27 12 10 47 47 H 1.08001 * 120.29926 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1720 0.0000 4 6 3.6014 1.1474 -0.0005 5 7 4.2721 0.0204 0.0045 6 6 3.6479 -1.1611 -0.0010 7 6 4.3795 -2.3636 -0.0015 8 6 3.7304 -3.5553 -0.0014 9 6 2.3252 -3.6130 -0.0014 10 6 1.6440 -4.9243 -0.0020 11 8 0.7737 -5.1575 0.8141 12 7 1.9876 -5.8618 -0.9072 13 6 1.2638 -7.1387 -0.9741 14 6 0.7773 -7.3551 -2.4105 15 6 1.9669 -7.2560 -3.3682 16 6 2.5857 -5.8595 -3.2730 17 1 1.8329 -5.1105 -3.5191 18 7 3.7046 -5.7554 -4.2128 19 6 4.0843 -4.5302 -4.6923 20 1 3.5587 -3.6407 -4.3779 21 6 5.1449 -4.4314 -5.5824 22 7 5.7859 -5.5154 -5.9651 23 14 5.6624 -2.7602 -6.2370 24 1 6.0622 -1.8870 -5.1042 25 1 6.8112 -2.9255 -7.1634 26 1 4.5256 -2.1394 -6.9632 27 6 3.0890 -5.6239 -1.8501 28 6 1.5759 -2.4478 -0.0009 29 6 2.2308 -1.2082 -0.0013 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6848 2.1163 0.0007 34 1 4.1436 2.0815 -0.0001 35 1 5.4591 -2.3379 -0.0021 36 1 4.3009 -4.4724 -0.0022 37 1 1.9306 -7.9521 -0.6877 38 1 0.4086 -7.1096 -0.2990 39 1 0.3227 -8.3421 -2.4958 40 1 0.0415 -6.5920 -2.6641 41 1 2.7134 -8.0031 -3.0984 42 1 1.6274 -7.4337 -4.3885 43 1 4.1765 -6.5543 -4.4954 44 1 6.5272 -5.4464 -6.5868 45 1 3.4376 -4.5957 -1.7528 46 1 3.9077 -6.3112 -1.6366 47 1 0.4968 -2.4938 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999251311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:46 Heat of formation + Delta-G solvation = 31.697819 kcal Electronic energy + Delta-G solvation = -29642.663566 eV Core-core repulsion = 25790.270315 eV Total energy + Delta-G solvation = -3852.393251 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.11625 -39.96172 -37.51166 -36.73352 -34.80577 -34.32925 -32.63969 -31.47145 -30.51092 -30.47084 -28.30840 -28.00542 -25.68949 -24.34960 -23.81300 -23.64445 -21.85050 -21.11837 -20.65884 -19.38034 -18.29052 -17.38160 -17.13167 -16.74292 -16.16682 -15.60830 -15.19530 -14.73078 -14.62931 -14.51128 -14.30403 -14.06859 -13.93255 -13.66991 -13.57902 -13.31584 -13.25019 -12.95396 -12.72869 -12.59124 -12.49808 -12.35432 -11.89008 -11.65250 -11.51071 -11.31356 -11.04985 -10.87206 -10.66719 -10.58263 -10.35323 -10.24406 -10.04571 -9.74538 -9.72619 -9.54977 -9.13068 -8.77135 -8.44669 -8.23236 -7.07052 -5.84993 -3.15344 0.22689 0.66142 1.86969 2.48554 2.93133 3.25719 3.40491 3.45255 3.46469 4.02555 4.20710 4.36939 4.46197 4.49132 4.57769 4.65261 4.95130 4.98392 5.06787 5.15641 5.18223 5.20550 5.23714 5.30430 5.35313 5.40776 5.55735 5.56628 5.65777 5.74160 5.76758 5.83085 5.87497 5.91081 5.95690 6.02797 6.07840 6.19697 6.25292 6.29013 6.29323 6.31297 6.43385 6.65295 6.70793 6.73751 6.87835 7.54229 7.63607 7.84834 8.23023 8.33049 9.45028 9.98488 10.33947 11.36935 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007773 B = 0.005009 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3601.163333 B = 5588.743116 C = 8238.643579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.016 4.016 3 C -0.187 4.187 4 C 0.138 3.862 5 N -0.478 5.478 6 C 0.145 3.855 7 C -0.091 4.091 8 C -0.070 4.070 9 C -0.115 4.115 10 C 0.560 3.440 11 O -0.549 6.549 12 N -0.596 5.596 13 C 0.112 3.888 14 C -0.129 4.129 15 C -0.127 4.127 16 C 0.168 3.832 17 H 0.050 0.950 18 N -0.717 5.717 19 C -0.245 4.245 20 H 0.069 0.931 21 C -0.006 4.006 22 N -0.930 5.930 23 Si 0.902 3.098 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.286 1.286 27 C 0.075 3.925 28 C -0.045 4.045 29 C -0.107 4.107 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.143 0.857 36 H 0.138 0.862 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.072 0.928 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.386 0.614 44 H 0.257 0.743 45 H 0.093 0.907 46 H 0.068 0.932 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.534 6.375 12.960 17.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.024 4.024 3 C -0.207 4.207 4 C -0.034 4.034 5 N -0.187 5.187 6 C 0.024 3.976 7 C -0.110 4.110 8 C -0.090 4.090 9 C -0.118 4.118 10 C 0.348 3.652 11 O -0.428 6.428 12 N -0.328 5.328 13 C -0.010 4.010 14 C -0.168 4.168 15 C -0.165 4.165 16 C 0.057 3.943 17 H 0.068 0.932 18 N -0.358 5.358 19 C -0.376 4.376 20 H 0.087 0.913 21 C -0.202 4.202 22 N -0.577 5.577 23 Si 0.733 3.267 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.212 1.212 27 C -0.050 4.050 28 C -0.065 4.065 29 C -0.109 4.109 30 H 0.100 0.900 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.154 0.846 34 H 0.176 0.824 35 H 0.160 0.840 36 H 0.156 0.844 37 H 0.085 0.915 38 H 0.106 0.894 39 H 0.091 0.909 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.086 0.914 43 H 0.220 0.780 44 H 0.067 0.933 45 H 0.111 0.889 46 H 0.086 0.914 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.003 6.292 13.293 17.244 hybrid contribution -0.170 0.725 -0.681 1.009 sum -9.172 7.016 12.612 17.100 Atomic orbital electron populations 1.20912 0.89929 1.03828 1.03228 1.20197 0.96662 0.92056 0.93487 1.21724 0.95640 0.98661 1.04645 1.22957 0.91488 0.96472 0.92482 1.68063 1.39934 0.97734 1.12941 1.18960 0.89523 0.92541 0.96587 1.20693 1.00771 0.89661 0.99858 1.20985 0.92718 0.98835 0.96476 1.19848 0.94139 0.93542 1.04292 1.18298 0.82266 0.83750 0.80856 1.90747 1.32902 1.80383 1.38770 1.48215 1.34711 1.16117 1.33793 1.21616 0.97045 0.84685 0.97670 1.21883 0.98541 1.01917 0.94445 1.21834 0.96906 0.98365 0.99394 1.20389 0.90950 0.94828 0.88167 0.93179 1.42365 1.35774 1.07340 1.50334 1.19153 1.11720 0.85826 1.20934 0.91305 1.24712 0.98577 0.96958 0.99998 1.69643 1.24236 1.26634 1.37211 0.86343 0.77930 0.83733 0.78695 1.21008 1.21553 1.21235 1.23162 0.88102 1.03029 0.90689 1.21210 0.99898 0.89788 0.95606 1.18590 0.94090 0.93802 1.04389 0.90038 0.90522 0.90540 0.84556 0.82403 0.83971 0.84414 0.91468 0.89357 0.90919 0.91682 0.91962 0.91362 0.77974 0.93327 0.88937 0.91410 0.84495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 9.59 36.00 0.35 -0.67 16 2 C -0.02 -0.18 5.92 -104.22 -0.62 -0.80 16 3 C -0.19 -1.88 9.72 -39.79 -0.39 -2.27 16 4 C 0.14 1.58 11.14 -17.46 -0.19 1.38 16 5 N -0.48 -7.09 10.33 -10.92 -0.11 -7.21 16 6 C 0.15 2.24 6.61 -84.78 -0.56 1.68 16 7 C -0.09 -1.36 9.95 -39.54 -0.39 -1.76 16 8 C -0.07 -1.03 7.25 -39.58 -0.29 -1.31 16 9 C -0.12 -1.77 4.99 -104.99 -0.52 -2.29 16 10 C 0.56 9.13 7.21 -12.37 -0.09 9.04 16 11 O -0.55 -10.05 16.46 5.31 0.09 -9.96 16 12 N -0.60 -9.13 2.98 -174.17 -0.52 -9.65 16 13 C 0.11 1.49 6.43 -3.71 -0.02 1.46 16 14 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 15 C -0.13 -1.95 5.36 -26.69 -0.14 -2.09 16 16 C 0.17 3.14 2.91 -68.04 -0.20 2.94 16 17 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 18 N -0.72 -16.87 5.12 -53.53 -0.27 -17.15 16 19 C -0.25 -6.52 9.93 -15.06 -0.15 -6.67 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.93 -27.08 13.06 55.49 0.72 -26.36 16 23 Si 0.90 22.08 29.55 -169.99 -5.02 17.06 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.07 1.26 4.90 -3.93 -0.02 1.24 16 28 C -0.05 -0.65 9.01 -38.74 -0.35 -1.00 16 29 C -0.11 -1.50 5.74 -106.82 -0.61 -2.12 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.08 0.65 6.51 -51.93 -0.34 0.31 16 33 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.16 1.26 8.06 -52.48 -0.42 0.84 16 35 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.14 1.86 7.07 -52.48 -0.37 1.49 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.09 1.19 7.02 -51.93 -0.36 0.82 16 39 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.39 9.65 7.80 -40.82 -0.32 9.33 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.09 1.65 4.57 -51.93 -0.24 1.42 16 46 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.14 1.74 6.44 -52.49 -0.34 1.40 16 LS Contribution 379.96 15.07 5.73 5.73 Total: -1.00 -32.27 379.96 -10.43 -42.70 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -6.58 Total: 10.13 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -4.46 Total: -5.28 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -0.18 Total: -60.36 kcal Atomic # 8 Polarization: -10.05 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.27 -10.43 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999251311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.400 kcal (2) G-P(sol) polarization free energy of solvation -32.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds