Wall clock time and date at job start Tue Mar 31 2020 22:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36615 * 120.91770 * 2 1 4 4 C 1.39267 * 119.90375 * 180.02562 * 3 2 1 5 5 N 1.31151 * 121.77352 * 359.71330 * 4 3 2 6 6 C 1.33624 * 121.39060 * 0.57516 * 5 4 3 7 7 C 1.40757 * 120.83800 * 179.71423 * 6 5 4 8 8 C 1.35699 * 120.10868 * 179.72242 * 7 6 5 9 9 C 1.40640 * 120.92950 * 0.02562 * 8 7 6 10 10 C 1.47761 * 119.80100 * 179.97438 * 9 8 7 11 11 O 1.21562 * 119.99951 * 129.17330 * 10 9 8 12 12 N 1.34777 * 120.00253 * 309.17056 * 10 9 8 13 13 C 1.46928 * 120.63161 * 183.78912 * 12 10 9 14 14 C 1.53190 * 108.77474 * 126.37170 * 13 12 10 15 15 C 1.53036 * 109.31763 * 54.63250 * 14 13 12 16 16 C 1.53041 * 109.53796 * 298.63702 * 15 14 13 17 17 H 1.09001 * 109.49567 * 301.38154 * 16 15 14 18 18 N 1.46495 * 109.49891 * 181.31765 * 16 15 14 19 19 C 1.36936 * 120.00151 * 155.00044 * 18 16 15 20 20 H 1.07996 * 120.00282 * 359.97438 * 19 18 16 21 21 C 1.38812 * 120.00173 * 179.97438 * 19 18 16 22 22 N 1.31622 * 119.99899 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00149 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47099 * 59.99790 * 23 21 19 25 25 H 1.48500 * 109.47278 * 179.97438 * 23 21 19 26 26 H 1.48500 * 109.47041 * 299.99769 * 23 21 19 27 27 C 1.46929 * 120.62807 * 3.50521 * 12 10 9 28 28 C 1.38537 * 120.39031 * 359.97039 * 9 8 7 29 29 C 1.40192 * 119.40688 * 0.04538 * 28 9 8 30 30 H 1.08997 * 109.47356 * 269.97681 * 1 2 3 31 31 H 1.09000 * 109.47347 * 29.98124 * 1 2 3 32 32 H 1.09001 * 109.47363 * 149.97895 * 1 2 3 33 33 H 1.07998 * 120.05002 * 0.04087 * 3 2 1 34 34 H 1.08006 * 119.11926 * 180.02562 * 4 3 2 35 35 H 1.07995 * 119.94917 * 359.70866 * 7 6 5 36 36 H 1.08004 * 119.53820 * 179.97438 * 8 7 6 37 37 H 1.09007 * 109.58034 * 246.15383 * 13 12 10 38 38 H 1.08996 * 109.58293 * 6.57605 * 13 12 10 39 39 H 1.09006 * 109.49612 * 174.58719 * 14 13 12 40 40 H 1.08998 * 109.49365 * 294.67653 * 14 13 12 41 41 H 1.09000 * 109.45749 * 58.65381 * 15 14 13 42 42 H 1.08994 * 109.46159 * 178.62894 * 15 14 13 43 43 H 0.97003 * 119.99836 * 334.99687 * 18 16 15 44 44 H 0.96998 * 119.99917 * 180.02562 * 22 21 19 45 45 H 1.08996 * 109.58511 * 353.42215 * 27 12 10 46 46 H 1.09005 * 109.58354 * 113.84378 * 27 12 10 47 47 H 1.08001 * 120.29926 * 180.02562 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1720 0.0000 4 6 3.6014 1.1474 -0.0005 5 7 4.2721 0.0204 0.0045 6 6 3.6479 -1.1611 -0.0010 7 6 4.3795 -2.3636 -0.0015 8 6 3.7304 -3.5553 -0.0014 9 6 2.3252 -3.6130 -0.0014 10 6 1.6440 -4.9243 -0.0020 11 8 0.7737 -5.1575 0.8141 12 7 1.9876 -5.8618 -0.9072 13 6 1.2638 -7.1387 -0.9741 14 6 0.7773 -7.3551 -2.4105 15 6 1.9669 -7.2560 -3.3682 16 6 2.5857 -5.8595 -3.2730 17 1 1.8329 -5.1105 -3.5191 18 7 3.7046 -5.7554 -4.2128 19 6 4.0843 -4.5302 -4.6923 20 1 3.5587 -3.6407 -4.3779 21 6 5.1449 -4.4314 -5.5824 22 7 5.7859 -5.5154 -5.9651 23 14 5.6624 -2.7602 -6.2370 24 1 6.0622 -1.8870 -5.1042 25 1 6.8112 -2.9255 -7.1634 26 1 4.5256 -2.1394 -6.9632 27 6 3.0890 -5.6239 -1.8501 28 6 1.5759 -2.4478 -0.0009 29 6 2.2308 -1.2082 -0.0013 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8901 -0.5135 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6848 2.1163 0.0007 34 1 4.1436 2.0815 -0.0001 35 1 5.4591 -2.3379 -0.0021 36 1 4.3009 -4.4724 -0.0022 37 1 1.9306 -7.9521 -0.6877 38 1 0.4086 -7.1096 -0.2990 39 1 0.3227 -8.3421 -2.4958 40 1 0.0415 -6.5920 -2.6641 41 1 2.7134 -8.0031 -3.0984 42 1 1.6274 -7.4337 -4.3885 43 1 4.1765 -6.5543 -4.4954 44 1 6.5272 -5.4464 -6.5868 45 1 3.4376 -4.5957 -1.7528 46 1 3.9077 -6.3112 -1.6366 47 1 0.4968 -2.4938 -0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999251311.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:44 Heat of formation + Delta-G solvation = 12.786669 kcal Electronic energy + Delta-G solvation = -29643.483615 eV Core-core repulsion = 25790.270315 eV Total energy + Delta-G solvation = -3853.213300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -42.16935 -41.15661 -38.85132 -37.84867 -36.07081 -35.69926 -33.99156 -33.13502 -31.61490 -31.50790 -29.92273 -28.84759 -26.88475 -25.97599 -25.14906 -24.69940 -23.15415 -22.14506 -22.00084 -20.62292 -19.39867 -19.12061 -18.45587 -17.84014 -17.27703 -16.79578 -16.71319 -16.15131 -15.73814 -15.59310 -15.48722 -15.41870 -15.34184 -15.03038 -14.91045 -14.49290 -14.10275 -14.00783 -13.90881 -13.79229 -13.64528 -13.44138 -13.15357 -12.90062 -12.79973 -12.68256 -12.54340 -12.39773 -12.26675 -11.99278 -11.92851 -11.62607 -11.47515 -11.18778 -11.17662 -10.91853 -10.51991 -9.87061 -9.77173 -9.29101 -9.00294 -7.96713 -5.25189 -0.77994 -0.35694 0.84877 1.33804 1.44475 1.46222 1.51731 1.76336 2.07924 2.53183 3.00021 3.20421 3.32806 3.37498 3.45278 3.63047 3.76628 3.81901 3.90187 3.95696 4.00235 4.03960 4.17427 4.24940 4.36176 4.38272 4.42884 4.49169 4.60020 4.68860 4.71739 4.73233 4.82804 4.84852 4.86822 4.91794 4.96626 5.00138 5.09559 5.12013 5.15403 5.29815 5.36263 5.43432 5.44236 5.48237 5.54405 5.74715 6.21800 6.28319 6.89020 6.96140 7.33213 8.04906 8.30180 9.25768 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007773 B = 0.005009 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3601.163333 B = 5588.743116 C = 8238.643579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.023 4.023 3 C -0.179 4.179 4 C 0.139 3.861 5 N -0.516 5.516 6 C 0.124 3.876 7 C -0.108 4.108 8 C -0.073 4.073 9 C -0.139 4.139 10 C 0.563 3.437 11 O -0.571 6.571 12 N -0.593 5.593 13 C 0.107 3.893 14 C -0.117 4.117 15 C -0.119 4.119 16 C 0.165 3.835 17 H 0.034 0.966 18 N -0.727 5.727 19 C -0.238 4.238 20 H 0.067 0.933 21 C -0.061 4.061 22 N -0.962 5.962 23 Si 0.957 3.043 24 H -0.283 1.283 25 H -0.292 1.292 26 H -0.281 1.281 27 C 0.091 3.909 28 C -0.041 4.041 29 C -0.125 4.125 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.070 0.930 33 H 0.179 0.821 34 H 0.193 0.807 35 H 0.144 0.856 36 H 0.141 0.859 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.105 0.895 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.378 0.622 44 H 0.252 0.748 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.274 7.840 13.614 19.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.031 4.031 3 C -0.198 4.198 4 C -0.033 4.033 5 N -0.225 5.225 6 C 0.003 3.997 7 C -0.126 4.126 8 C -0.094 4.094 9 C -0.142 4.142 10 C 0.352 3.648 11 O -0.452 6.452 12 N -0.324 5.324 13 C -0.014 4.014 14 C -0.156 4.156 15 C -0.158 4.158 16 C 0.056 3.944 17 H 0.052 0.948 18 N -0.367 5.367 19 C -0.370 4.370 20 H 0.085 0.915 21 C -0.255 4.255 22 N -0.612 5.612 23 Si 0.787 3.213 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.034 4.034 28 C -0.060 4.060 29 C -0.127 4.127 30 H 0.114 0.886 31 H 0.119 0.881 32 H 0.089 0.911 33 H 0.196 0.804 34 H 0.209 0.791 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.124 0.876 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.211 0.789 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.784 7.754 13.973 19.278 hybrid contribution 0.288 0.398 -0.819 0.956 sum -10.496 8.152 13.153 18.698 Atomic orbital electron populations 1.21002 0.87616 1.04736 1.04378 1.20633 0.98370 0.91413 0.92639 1.22177 0.95153 0.99917 1.02544 1.23689 0.92730 0.96675 0.90173 1.68085 1.41022 0.98411 1.15031 1.19175 0.90374 0.92961 0.97192 1.20822 1.01039 0.90098 1.00664 1.20996 0.92702 0.98961 0.96693 1.19879 0.94431 0.93578 1.06351 1.18397 0.81847 0.84020 0.80512 1.90724 1.33991 1.80845 1.39618 1.48192 1.34335 1.16829 1.33070 1.21833 0.97361 0.84056 0.98129 1.21826 0.97084 1.03674 0.92999 1.21748 0.97973 0.96035 0.99996 1.20550 0.89215 0.96657 0.88004 0.94783 1.42476 1.36856 1.06002 1.51349 1.19396 1.10893 0.86878 1.19794 0.91531 1.25348 0.99305 0.99668 1.01135 1.69766 1.24917 1.28181 1.38312 0.85463 0.77428 0.80490 0.77941 1.20953 1.21834 1.20695 1.22744 0.88416 1.02474 0.89797 1.21419 1.00477 0.89711 0.94442 1.18826 0.93938 0.94910 1.05068 0.88616 0.88135 0.91122 0.80414 0.79061 0.83825 0.84099 0.89736 0.89069 0.87622 0.92194 0.91264 0.91965 0.78945 0.93919 0.90123 0.91173 0.83273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 9.59 71.23 0.68 -0.98 16 2 C -0.02 -0.47 5.92 -19.61 -0.12 -0.58 16 3 C -0.18 -3.02 9.72 22.14 0.22 -2.81 16 4 C 0.14 2.86 11.14 85.04 0.95 3.81 16 5 N -0.52 -15.11 10.33 -188.46 -1.95 -17.06 16 6 C 0.12 3.87 6.61 40.37 0.27 4.14 16 7 C -0.11 -3.37 9.95 22.30 0.22 -3.15 16 8 C -0.07 -2.25 7.25 22.27 0.16 -2.09 16 9 C -0.14 -4.36 4.99 -20.10 -0.10 -4.46 16 10 C 0.56 18.34 7.21 86.76 0.63 18.96 16 11 O -0.57 -20.70 16.46 -3.91 -0.06 -20.77 16 12 N -0.59 -17.84 2.98 -823.23 -2.45 -20.30 16 13 C 0.11 2.66 6.43 86.36 0.55 3.21 16 14 C -0.12 -2.72 6.08 30.67 0.19 -2.54 16 15 C -0.12 -3.53 5.36 30.62 0.16 -3.37 16 16 C 0.17 6.19 2.91 44.93 0.13 6.32 16 17 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 18 N -0.73 -34.62 5.12 -323.27 -1.66 -36.28 16 19 C -0.24 -12.78 9.93 84.03 0.83 -11.95 16 20 H 0.07 3.55 7.83 -2.91 -0.02 3.53 16 21 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 22 N -0.96 -56.96 13.06 21.65 0.28 -56.67 16 23 Si 0.96 45.88 29.55 68.60 2.03 47.91 16 24 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 25 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 27 C 0.09 3.06 4.90 86.22 0.42 3.48 16 28 C -0.04 -1.17 9.01 22.82 0.21 -0.97 16 29 C -0.13 -3.49 5.74 -21.29 -0.12 -3.61 16 30 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 0.91 8.10 -2.39 -0.02 0.89 16 32 H 0.07 1.06 6.51 -2.39 -0.02 1.05 16 33 H 0.18 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.19 2.44 8.06 -2.91 -0.02 2.41 16 35 H 0.14 4.21 8.06 -2.91 -0.02 4.19 16 36 H 0.14 4.02 7.07 -2.91 -0.02 3.99 16 37 H 0.08 1.83 8.14 -2.38 -0.02 1.81 16 38 H 0.09 2.28 7.02 -2.39 -0.02 2.26 16 39 H 0.11 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.38 19.17 7.80 -92.71 -0.72 18.45 16 44 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 45 H 0.08 2.96 4.57 -2.39 -0.01 2.95 16 46 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 47 H 0.15 3.72 6.44 -2.91 -0.02 3.70 16 Total: -1.00 -70.90 379.96 2.22 -68.69 By element: Atomic # 1 Polarization: 33.74 SS G_CDS: 0.28 Total: 34.02 kcal Atomic # 6 Polarization: -5.29 SS G_CDS: 5.75 Total: 0.46 kcal Atomic # 7 Polarization: -124.53 SS G_CDS: -5.77 Total: -130.31 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.06 Total: -20.77 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -70.90 2.22 -68.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999251311.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.476 kcal (2) G-P(sol) polarization free energy of solvation -70.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds