Wall clock time and date at job start Tue Mar 31 2020 22:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30824 * 119.22848 * 2 1 4 4 C 1.33794 * 121.71331 * 180.24045 * 3 2 1 5 5 C 1.40526 * 120.81174 * 179.73031 * 4 3 2 6 6 C 1.36128 * 119.81425 * 180.02562 * 5 4 3 7 7 C 1.39340 * 121.09058 * 359.95936 * 6 5 4 8 8 C 1.36140 * 120.84438 * 0.04011 * 7 6 5 9 9 C 1.40554 * 119.61593 * 359.97438 * 8 7 6 10 10 C 1.40495 * 121.23750 * 179.97438 * 9 8 7 11 11 C 1.39053 * 117.96202 * 180.02562 * 10 9 8 12 12 C 1.47758 * 120.26673 * 179.97438 * 11 10 9 13 13 O 1.21556 * 119.99966 * 235.39489 * 12 11 10 14 14 N 1.34779 * 119.99761 * 55.39105 * 12 11 10 15 15 C 1.46922 * 120.63259 * 355.99918 * 14 12 11 16 16 C 1.53184 * 108.77764 * 126.41457 * 15 14 12 17 17 C 1.53045 * 109.31407 * 54.63220 * 16 15 14 18 18 C 1.53038 * 109.53550 * 298.63751 * 17 16 15 19 19 H 1.09004 * 109.49832 * 301.37846 * 18 17 16 20 20 N 1.46501 * 109.49344 * 181.31504 * 18 17 16 21 21 C 1.36942 * 119.99848 * 155.00090 * 20 18 17 22 22 H 1.07996 * 119.99876 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00051 * 179.97438 * 21 20 18 24 24 N 1.31615 * 120.00045 * 179.72312 * 23 21 20 25 25 Si 1.86801 * 119.99899 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46884 * 90.00607 * 25 23 21 27 27 H 1.48497 * 109.47087 * 209.99822 * 25 23 21 28 28 H 1.48493 * 109.47240 * 330.00354 * 25 23 21 29 29 C 1.46926 * 120.62682 * 176.01937 * 14 12 11 30 30 H 1.09000 * 109.46820 * 274.39826 * 1 2 3 31 31 H 1.08995 * 109.47313 * 34.40128 * 1 2 3 32 32 H 1.08999 * 109.47474 * 154.40393 * 1 2 3 33 33 H 1.08005 * 120.09615 * 0.02602 * 5 4 3 34 34 H 1.08001 * 119.45673 * 179.97438 * 6 5 4 35 35 H 1.08004 * 119.58139 * 180.02562 * 7 6 5 36 36 H 1.07994 * 120.19646 * 180.02562 * 8 7 6 37 37 H 1.07992 * 121.01746 * 0.04550 * 10 9 8 38 38 H 1.09003 * 109.58686 * 6.62203 * 15 14 12 39 39 H 1.09003 * 109.58336 * 246.20146 * 15 14 12 40 40 H 1.09005 * 109.49870 * 294.68215 * 16 15 14 41 41 H 1.09003 * 109.49990 * 174.58289 * 16 15 14 42 42 H 1.09001 * 109.46006 * 178.61377 * 17 16 15 43 43 H 1.08999 * 109.44430 * 58.65342 * 17 16 15 44 44 H 0.97003 * 120.00270 * 334.99989 * 20 18 17 45 45 H 0.97001 * 120.00166 * 179.97438 * 24 23 21 46 46 H 1.09004 * 109.58484 * 113.80121 * 29 14 12 47 47 H 1.08995 * 109.58964 * 353.37875 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4825 1.1997 -0.0048 5 6 4.1493 2.4367 -0.0104 6 6 5.5101 2.4720 -0.0157 7 6 6.2604 1.2979 -0.0149 8 6 5.6513 0.0803 -0.0095 9 6 4.2477 0.0058 -0.0042 10 6 3.5839 -1.2324 0.0009 11 6 2.1934 -1.2266 0.0054 12 6 1.4434 -2.4997 0.0103 13 8 0.6169 -2.7215 -0.8531 14 7 1.6757 -3.4150 0.9719 15 6 2.7317 -3.2001 1.9705 16 6 2.1245 -3.3453 3.3694 17 6 1.4228 -4.7010 3.4784 18 6 0.2915 -4.7758 2.4505 19 1 -0.4146 -3.9643 2.6270 20 7 -0.3996 -6.0614 2.5769 21 6 -1.7016 -6.1817 2.1699 22 1 -2.2191 -5.3287 1.7563 23 6 -2.3563 -7.3999 2.2891 24 7 -3.6094 -7.5141 1.9030 25 14 -1.4610 -8.8753 3.0039 26 1 -1.6572 -8.9081 4.4756 27 1 -2.0029 -10.1212 2.4046 28 1 -0.0113 -8.7696 2.7000 29 6 0.8779 -4.6468 1.0413 30 1 -0.3633 0.0788 1.0247 31 1 -0.3634 0.8479 -0.5806 32 1 -0.3634 -0.9268 -0.4440 33 1 3.5837 3.3568 -0.0104 34 1 6.0166 3.4259 -0.0204 35 1 7.3389 1.3543 -0.0188 36 1 6.2431 -0.8231 -0.0085 37 1 4.1366 -2.1601 0.0015 38 1 3.1463 -2.1987 1.8542 39 1 3.5190 -3.9417 1.8351 40 1 1.4015 -2.5469 3.5368 41 1 2.9150 -3.2836 4.1174 42 1 1.0110 -4.8172 4.4809 43 1 2.1413 -5.4979 3.2864 44 1 0.0650 -6.8274 2.9487 45 1 -4.0667 -8.3655 1.9860 46 1 1.5140 -5.5065 0.8301 47 1 0.0694 -4.6001 0.3118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999289780.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:16 Heat of formation + Delta-G solvation = 15.776530 kcal Electronic energy + Delta-G solvation = -29237.109600 eV Core-core repulsion = 25384.025950 eV Total energy + Delta-G solvation = -3853.083650 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.28823 -40.95712 -38.97385 -38.01759 -36.42751 -34.81748 -33.86911 -33.02753 -32.93869 -31.46544 -30.25802 -28.89178 -26.99395 -25.70529 -25.06481 -23.67475 -23.26707 -23.01125 -22.11443 -20.70615 -19.56819 -19.29763 -18.37375 -17.89700 -17.22568 -16.81753 -16.64938 -16.33410 -15.79531 -15.68884 -15.51781 -15.37261 -15.28394 -14.97106 -14.81850 -14.34659 -14.31104 -14.15077 -14.06084 -13.91347 -13.79465 -13.35918 -13.19546 -12.98338 -12.71478 -12.54251 -12.40597 -12.33576 -12.18776 -11.99847 -11.94957 -11.82844 -11.51314 -11.37617 -11.17253 -11.08699 -10.55098 -9.91365 -9.71586 -9.28986 -9.23151 -8.04095 -5.40587 -0.76827 -0.39987 0.87822 1.36951 1.38497 1.42832 1.49832 1.74135 2.01651 2.47581 2.99626 3.06862 3.25324 3.27189 3.48145 3.53642 3.56654 3.82910 3.88448 3.99971 4.01065 4.05394 4.23105 4.24404 4.32637 4.33969 4.37388 4.50694 4.54171 4.55371 4.65869 4.68737 4.77527 4.81930 4.86541 4.89235 4.98792 5.04345 5.09747 5.14915 5.34176 5.38215 5.40132 5.42812 5.44497 5.50051 5.74478 5.88239 6.19125 6.28898 6.79173 6.98250 7.05186 7.77110 7.99400 9.17590 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022430 B = 0.002665 C = 0.002506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1248.010392 B =10503.494626 C =11168.702819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.188 3.812 3 N -0.497 5.497 4 C 0.120 3.880 5 C -0.124 4.124 6 C -0.077 4.077 7 C -0.117 4.117 8 C -0.086 4.086 9 C -0.125 4.125 10 C -0.003 4.003 11 C -0.192 4.192 12 C 0.561 3.439 13 O -0.576 6.576 14 N -0.593 5.593 15 C 0.094 3.906 16 C -0.123 4.123 17 C -0.120 4.120 18 C 0.169 3.831 19 H 0.030 0.970 20 N -0.742 5.742 21 C -0.237 4.237 22 H 0.045 0.955 23 C -0.066 4.066 24 N -0.985 5.985 25 Si 0.963 3.037 26 H -0.275 1.275 27 H -0.298 1.298 28 H -0.244 1.244 29 C 0.106 3.894 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.163 0.837 37 H 0.175 0.825 38 H 0.099 0.901 39 H 0.103 0.897 40 H 0.054 0.946 41 H 0.114 0.886 42 H 0.069 0.931 43 H 0.082 0.918 44 H 0.371 0.629 45 H 0.259 0.741 46 H 0.075 0.925 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.289 18.702 1.123 34.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.036 3.964 3 N -0.206 5.206 4 C -0.002 4.002 5 C -0.142 4.142 6 C -0.096 4.096 7 C -0.134 4.134 8 C -0.104 4.104 9 C -0.127 4.127 10 C -0.029 4.029 11 C -0.197 4.197 12 C 0.349 3.651 13 O -0.456 6.456 14 N -0.325 5.325 15 C -0.027 4.027 16 C -0.161 4.161 17 C -0.159 4.159 18 C 0.060 3.940 19 H 0.048 0.952 20 N -0.386 5.386 21 C -0.368 4.368 22 H 0.063 0.937 23 C -0.257 4.257 24 N -0.635 5.635 25 Si 0.790 3.210 26 H -0.201 1.201 27 H -0.225 1.225 28 H -0.168 1.168 29 C -0.019 4.019 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.155 0.845 34 H 0.179 0.821 35 H 0.182 0.818 36 H 0.181 0.819 37 H 0.193 0.807 38 H 0.117 0.883 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.133 0.867 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.205 0.795 45 H 0.067 0.933 46 H 0.093 0.907 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 28.258 19.481 0.624 34.328 hybrid contribution -0.700 -1.839 -0.076 1.969 sum 27.558 17.642 0.548 32.726 Atomic orbital electron populations 1.20974 0.88617 1.04414 1.03895 1.21378 0.97238 0.86853 0.90973 1.67825 1.09724 1.27756 1.15318 1.19462 0.88700 0.94829 0.97181 1.21001 0.95505 0.95675 1.02043 1.21411 0.92682 1.00755 0.94792 1.21407 1.02245 0.91471 0.98325 1.21407 0.90995 1.00649 0.97357 1.18975 0.96397 0.92633 1.04732 1.22217 0.91516 0.99245 0.89957 1.20549 0.95532 0.93509 1.10120 1.18459 0.81951 0.83450 0.81246 1.90774 1.36892 1.79056 1.38873 1.48212 1.35783 1.19392 1.29087 1.22320 0.89317 1.04014 0.87018 1.21870 1.00999 0.96223 0.97016 1.21796 0.96617 0.98909 0.98532 1.20630 0.93190 0.87144 0.93020 0.95189 1.42638 1.10498 1.09381 1.76048 1.18950 0.88254 0.96143 1.33442 0.93699 1.25629 0.96802 1.01086 1.02176 1.69917 1.12470 1.25943 1.55160 0.85297 0.79342 0.78198 0.78212 1.20068 1.22501 1.16820 1.22279 0.94515 0.85225 0.99917 0.89499 0.89275 0.90857 0.84457 0.82066 0.81789 0.81918 0.80730 0.88281 0.87896 0.92719 0.86727 0.91189 0.89984 0.79462 0.93273 0.90665 0.93384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.54 9.83 71.24 0.70 -2.84 16 2 C 0.19 5.41 6.82 43.28 0.30 5.70 16 3 N -0.50 -13.55 10.20 -175.85 -1.79 -15.35 16 4 C 0.12 2.65 6.61 40.28 0.27 2.92 16 5 C -0.12 -2.01 9.97 22.34 0.22 -1.78 16 6 C -0.08 -0.71 9.94 22.04 0.22 -0.50 16 7 C -0.12 -0.85 9.96 22.05 0.22 -0.63 16 8 C -0.09 -0.85 9.77 22.35 0.22 -0.64 16 9 C -0.13 -2.22 5.74 -21.28 -0.12 -2.34 16 10 C 0.00 -0.07 7.34 23.02 0.17 0.10 16 11 C -0.19 -5.12 4.85 -20.00 -0.10 -5.21 16 12 C 0.56 18.42 6.52 86.76 0.57 18.99 16 13 O -0.58 -24.52 14.53 -3.89 -0.06 -24.58 16 14 N -0.59 -17.12 2.97 -822.44 -2.44 -19.56 16 15 C 0.09 1.71 5.61 86.36 0.48 2.19 16 16 C -0.12 -2.29 6.08 30.67 0.19 -2.10 16 17 C -0.12 -3.06 5.35 30.62 0.16 -2.90 16 18 C 0.17 6.34 2.92 45.07 0.13 6.48 16 19 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 20 N -0.74 -34.16 4.93 -322.58 -1.59 -35.75 16 21 C -0.24 -13.83 10.41 84.03 0.88 -12.95 16 22 H 0.04 2.97 8.06 -2.91 -0.02 2.95 16 23 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 24 N -0.99 -64.67 13.97 21.65 0.30 -64.37 16 25 Si 0.96 45.08 27.73 68.60 1.90 46.98 16 26 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 27 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 28 H -0.24 -9.98 6.52 99.48 0.65 -9.33 16 29 C 0.11 3.85 6.01 86.36 0.52 4.37 16 30 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.07 2.54 5.52 -2.39 -0.01 2.52 16 33 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 34 H 0.16 0.48 8.06 -2.91 -0.02 0.45 16 35 H 0.16 0.10 8.06 -2.91 -0.02 0.07 16 36 H 0.16 0.60 8.06 -2.91 -0.02 0.58 16 37 H 0.18 2.10 7.51 -2.91 -0.02 2.08 16 38 H 0.10 1.51 4.81 -2.39 -0.01 1.50 16 39 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 41 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 43 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.37 15.77 5.66 -92.71 -0.52 15.25 16 45 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 46 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 47 H 0.05 2.22 7.03 -2.39 -0.02 2.20 16 Total: -1.00 -83.30 376.65 2.22 -81.09 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 0.41 Total: 26.13 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 5.48 Total: 5.40 kcal Atomic # 7 Polarization: -129.50 SS G_CDS: -5.53 Total: -135.03 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.06 Total: -24.58 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Total: -83.30 2.22 -81.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999289780.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.865 kcal (2) G-P(sol) polarization free energy of solvation -83.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds