Wall clock time and date at job start Tue Mar 31 2020 22:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30819 * 119.22943 * 2 1 4 4 C 1.33789 * 121.71986 * 180.02562 * 3 2 1 5 5 C 1.40531 * 120.83125 * 180.02562 * 4 3 2 6 6 C 1.36131 * 119.81755 * 179.97438 * 5 4 3 7 7 C 1.39345 * 121.09269 * 0.02562 * 6 5 4 8 8 C 1.36133 * 120.83811 * 359.97438 * 7 6 5 9 9 C 1.40555 * 119.61845 * 0.02562 * 8 7 6 10 10 C 1.40498 * 121.22060 * 180.30073 * 9 8 7 11 11 C 1.39042 * 117.95760 * 180.25557 * 10 9 8 12 12 C 1.47757 * 120.26779 * 179.74527 * 11 10 9 13 13 O 1.21567 * 120.00057 * 125.89224 * 12 11 10 14 14 N 1.34777 * 119.99660 * 305.89707 * 12 11 10 15 15 C 1.46923 * 120.63133 * 354.26054 * 14 12 11 16 16 C 1.53193 * 108.77292 * 233.63202 * 15 14 12 17 17 C 1.53041 * 109.31671 * 305.36455 * 16 15 14 18 18 C 1.53043 * 109.53588 * 61.36323 * 17 16 15 19 19 H 1.09004 * 109.49200 * 58.58982 * 18 17 16 20 20 N 1.46500 * 109.52430 * 178.66843 * 18 17 16 21 21 C 1.36942 * 119.99951 * 204.92461 * 20 18 17 22 22 H 1.08000 * 119.99836 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99654 * 179.97438 * 21 20 18 24 24 N 1.31621 * 120.00174 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99688 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47084 * 90.00123 * 25 23 21 27 27 H 1.48501 * 109.46953 * 210.00437 * 25 23 21 28 28 H 1.48497 * 109.47072 * 329.99847 * 25 23 21 29 29 C 1.46932 * 120.62761 * 174.28642 * 14 12 11 30 30 H 1.09000 * 109.47073 * 274.83792 * 1 2 3 31 31 H 1.09000 * 109.47177 * 34.83345 * 1 2 3 32 32 H 1.09000 * 109.47170 * 154.83681 * 1 2 3 33 33 H 1.07998 * 120.09009 * 359.97438 * 5 4 3 34 34 H 1.08002 * 119.45301 * 179.97438 * 6 5 4 35 35 H 1.07995 * 119.57794 * 179.97438 * 7 6 5 36 36 H 1.08005 * 120.19056 * 180.02562 * 8 7 6 37 37 H 1.07999 * 121.01855 * 0.02562 * 10 9 8 38 38 H 1.08995 * 109.58703 * 353.41899 * 15 14 12 39 39 H 1.09006 * 109.58503 * 113.84573 * 15 14 12 40 40 H 1.08999 * 109.50156 * 65.32335 * 16 15 14 41 41 H 1.09005 * 109.49264 * 185.38231 * 16 15 14 42 42 H 1.09006 * 109.46212 * 301.34876 * 17 16 15 43 43 H 1.08995 * 109.46137 * 181.38717 * 17 16 15 44 44 H 0.97000 * 119.99902 * 24.91754 * 20 18 17 45 45 H 0.96997 * 119.99446 * 180.02562 * 24 23 21 46 46 H 1.09003 * 109.58852 * 6.58311 * 29 14 12 47 47 H 1.09002 * 109.70204 * 246.22491 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4825 1.1998 -0.0005 5 6 4.1496 2.4366 0.0000 6 6 5.5104 2.4717 0.0000 7 6 6.2606 1.2974 -0.0010 8 6 5.6512 0.0801 -0.0016 9 6 4.2476 0.0059 -0.0016 10 6 3.5838 -1.2324 0.0041 11 6 2.1934 -1.2267 -0.0018 12 6 1.4434 -2.4997 -0.0018 13 8 0.5994 -2.7081 0.8480 14 7 1.6950 -3.4300 -0.9440 15 6 2.6196 -3.1447 -2.0496 16 6 1.9068 -3.4312 -3.3749 17 6 1.3675 -4.8634 -3.3604 18 6 0.3542 -5.0171 -2.2238 19 1 -0.4580 -4.3033 -2.3616 20 7 -0.1855 -6.3791 -2.2298 21 6 -1.4191 -6.6292 -1.6904 22 1 -1.9940 -5.8224 -1.2602 23 6 -1.9306 -7.9196 -1.6967 24 7 -1.2298 -8.9028 -2.2206 25 14 -3.6131 -8.2608 -0.9602 26 1 -4.6527 -8.1099 -2.0097 27 1 -3.6475 -9.6456 -0.4249 28 1 -3.8765 -7.2984 0.1396 29 6 1.0493 -4.7486 -0.8854 30 1 -0.3633 0.0867 1.0240 31 1 -0.3633 0.8435 -0.5870 32 1 -0.3633 -0.9301 -0.4370 33 1 3.5842 3.3568 0.0005 34 1 6.0171 3.4255 0.0000 35 1 7.3390 1.3537 -0.0014 36 1 6.2428 -0.8235 -0.0020 37 1 4.1366 -2.1602 0.0091 38 1 2.9188 -2.0972 -2.0146 39 1 3.5001 -3.7814 -1.9631 40 1 1.0800 -2.7324 -3.5019 41 1 2.6108 -3.3155 -4.1991 42 1 2.1917 -5.5604 -3.2086 43 1 0.8812 -5.0780 -4.3119 44 1 0.3309 -7.1037 -2.6160 45 1 -1.5875 -9.8044 -2.2253 46 1 0.3124 -4.7592 -0.0823 47 1 1.8000 -5.5175 -0.7028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999289782.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:20 Heat of formation + Delta-G solvation = 31.296527 kcal Electronic energy + Delta-G solvation = -29153.307299 eV Core-core repulsion = 25300.896647 eV Total energy + Delta-G solvation = -3852.410652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.36146 -39.82822 -37.75914 -37.00866 -34.66937 -33.77603 -32.31647 -32.19037 -31.23067 -30.49660 -28.35757 -27.95352 -25.83967 -24.18877 -23.93331 -22.86236 -22.40450 -21.90753 -20.71423 -19.37246 -18.36645 -17.45942 -17.10413 -16.91076 -16.22159 -15.75563 -15.35666 -14.89550 -14.72316 -14.61460 -14.39835 -14.13845 -13.95815 -13.73122 -13.44069 -13.39362 -13.21862 -13.17637 -12.73228 -12.50173 -12.37851 -12.20515 -12.02249 -11.78187 -11.59683 -11.41056 -11.13785 -10.86210 -10.82198 -10.65250 -10.56056 -10.22293 -10.11925 -9.86231 -9.73581 -9.54195 -9.10616 -8.93850 -8.56174 -8.41371 -7.02536 -5.80475 -3.10475 -0.01940 0.40041 1.59922 2.38906 2.80227 3.11374 3.44114 3.49776 3.52097 3.76045 3.88950 4.19827 4.29596 4.40278 4.48781 4.56675 4.67634 4.77724 4.86579 4.89751 5.03771 5.08787 5.21349 5.33345 5.44521 5.47560 5.48894 5.52437 5.58047 5.59404 5.60819 5.75347 5.76550 5.87394 5.97387 5.98088 5.99629 6.06079 6.12400 6.17521 6.22490 6.30267 6.43431 6.49451 6.66593 6.78460 6.95733 7.50934 7.66048 7.70431 8.22276 8.37710 9.49603 10.02991 10.38211 11.41700 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021488 B = 0.002601 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.738157 B =10761.018034 C =11439.343793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.206 3.794 3 N -0.479 5.479 4 C 0.144 3.856 5 C -0.099 4.099 6 C -0.095 4.095 7 C -0.124 4.124 8 C -0.086 4.086 9 C -0.114 4.114 10 C -0.021 4.021 11 C -0.169 4.169 12 C 0.559 3.441 13 O -0.525 6.525 14 N -0.597 5.597 15 C 0.103 3.897 16 C -0.129 4.129 17 C -0.126 4.126 18 C 0.169 3.831 19 H 0.052 0.948 20 N -0.718 5.718 21 C -0.243 4.243 22 H 0.072 0.928 23 C -0.010 4.010 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.280 1.280 29 C 0.092 3.908 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.128 0.872 36 H 0.132 0.868 37 H 0.146 0.854 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.385 0.615 45 H 0.256 0.744 46 H 0.093 0.907 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.118 21.653 0.774 27.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.052 3.948 3 N -0.188 5.188 4 C 0.023 3.977 5 C -0.117 4.117 6 C -0.115 4.115 7 C -0.142 4.142 8 C -0.105 4.105 9 C -0.116 4.116 10 C -0.047 4.047 11 C -0.174 4.174 12 C 0.345 3.655 13 O -0.402 6.402 14 N -0.330 5.330 15 C -0.020 4.020 16 C -0.168 4.168 17 C -0.164 4.164 18 C 0.058 3.942 19 H 0.070 0.930 20 N -0.358 5.358 21 C -0.374 4.374 22 H 0.090 0.910 23 C -0.207 4.207 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.206 1.206 29 C -0.032 4.032 30 H 0.108 0.892 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.163 0.837 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.111 0.889 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.077 22.332 1.299 27.547 hybrid contribution -0.070 -1.359 0.292 1.391 sum 16.007 20.973 1.592 26.432 Atomic orbital electron populations 1.20869 0.87657 1.03890 1.04190 1.21479 0.97362 0.86298 0.89615 1.67839 1.08284 1.28013 1.14658 1.18974 0.89092 0.93023 0.96660 1.20814 0.94208 0.96389 1.00312 1.20959 0.93687 0.98819 0.98007 1.20916 1.00410 0.92276 1.00588 1.21041 0.92434 0.98711 0.98321 1.18758 0.94931 0.93539 1.04405 1.21932 0.92867 0.97771 0.92136 1.20912 0.94469 0.95466 1.06582 1.18038 0.82660 0.82792 0.82006 1.90829 1.32729 1.78686 1.37911 1.48249 1.44967 1.15140 1.24674 1.21849 0.92331 1.01087 0.86700 1.21875 1.00423 0.98382 0.96114 1.21831 0.99317 0.95062 1.00236 1.20480 0.93652 0.89278 0.90824 0.93035 1.42377 1.19134 1.03239 1.71080 1.19271 0.93517 0.93357 1.31233 0.90993 1.24750 0.98741 0.95756 1.01415 1.69661 1.37902 1.00037 1.50413 0.86192 0.83976 0.77276 0.78822 1.21659 1.21739 1.20553 1.22866 0.97314 0.80165 1.02888 0.89241 0.90155 0.89979 0.84614 0.85223 0.85391 0.85024 0.83653 0.90454 0.91254 0.91539 0.90938 0.91995 0.91306 0.78060 0.93457 0.88889 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.36 9.40 36.01 0.34 -1.02 16 2 C 0.21 2.76 6.82 -82.15 -0.56 2.20 16 3 N -0.48 -6.31 10.20 -6.93 -0.07 -6.38 16 4 C 0.14 1.68 6.61 -84.79 -0.56 1.12 16 5 C -0.10 -0.90 9.97 -39.48 -0.39 -1.29 16 6 C -0.09 -0.65 9.94 -39.93 -0.40 -1.05 16 7 C -0.12 -0.81 9.96 -39.93 -0.40 -1.21 16 8 C -0.09 -0.67 9.77 -39.47 -0.39 -1.05 16 9 C -0.11 -1.19 5.74 -106.81 -0.61 -1.80 16 10 C -0.02 -0.23 7.67 -38.43 -0.29 -0.52 16 11 C -0.17 -2.25 4.61 -104.83 -0.48 -2.73 16 12 C 0.56 8.86 6.06 -12.37 -0.08 8.79 16 13 O -0.52 -10.25 15.32 5.31 0.08 -10.17 16 14 N -0.60 -8.90 2.97 -173.91 -0.52 -9.42 16 15 C 0.10 1.18 5.61 -3.71 -0.02 1.16 16 16 C -0.13 -1.53 6.08 -26.61 -0.16 -1.69 16 17 C -0.13 -1.92 5.36 -26.69 -0.14 -2.06 16 18 C 0.17 3.26 2.92 -67.81 -0.20 3.06 16 19 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 20 N -0.72 -17.48 5.13 -53.31 -0.27 -17.75 16 21 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 22 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 23 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 24 N -0.93 -27.77 13.06 55.49 0.72 -27.05 16 25 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 29 C 0.09 1.67 6.03 -3.71 -0.02 1.65 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.08 1.13 6.50 -51.93 -0.34 0.79 16 33 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 35 H 0.13 0.51 8.06 -52.49 -0.42 0.09 16 36 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.15 1.27 7.80 -52.49 -0.41 0.86 16 38 H 0.08 0.79 5.39 -51.93 -0.28 0.51 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.39 9.88 7.80 -40.82 -0.32 9.56 16 45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 46 H 0.09 1.99 7.00 -51.93 -0.36 1.63 16 47 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 381.60 15.07 5.75 5.75 Total: -1.00 -32.87 381.60 -10.69 -43.56 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -6.75 Total: 7.63 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -4.61 Total: -3.68 kcal Atomic # 7 Polarization: -60.46 SS G_CDS: -0.14 Total: -60.59 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.87 -10.69 -43.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999289782.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.859 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds