Wall clock time and date at job start Tue Mar 31 2020 22:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30819 * 119.22943 * 2 1 4 4 C 1.33789 * 121.71986 * 180.02562 * 3 2 1 5 5 C 1.40531 * 120.83125 * 180.02562 * 4 3 2 6 6 C 1.36131 * 119.81755 * 179.97438 * 5 4 3 7 7 C 1.39345 * 121.09269 * 0.02562 * 6 5 4 8 8 C 1.36133 * 120.83811 * 359.97438 * 7 6 5 9 9 C 1.40555 * 119.61845 * 0.02562 * 8 7 6 10 10 C 1.40498 * 121.22060 * 180.30073 * 9 8 7 11 11 C 1.39042 * 117.95760 * 180.25557 * 10 9 8 12 12 C 1.47757 * 120.26779 * 179.74527 * 11 10 9 13 13 O 1.21567 * 120.00057 * 125.89224 * 12 11 10 14 14 N 1.34777 * 119.99660 * 305.89707 * 12 11 10 15 15 C 1.46923 * 120.63133 * 354.26054 * 14 12 11 16 16 C 1.53193 * 108.77292 * 233.63202 * 15 14 12 17 17 C 1.53041 * 109.31671 * 305.36455 * 16 15 14 18 18 C 1.53043 * 109.53588 * 61.36323 * 17 16 15 19 19 H 1.09004 * 109.49200 * 58.58982 * 18 17 16 20 20 N 1.46500 * 109.52430 * 178.66843 * 18 17 16 21 21 C 1.36942 * 119.99951 * 204.92461 * 20 18 17 22 22 H 1.08000 * 119.99836 * 359.97438 * 21 20 18 23 23 C 1.38810 * 119.99654 * 179.97438 * 21 20 18 24 24 N 1.31621 * 120.00174 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 119.99688 * 179.97438 * 23 21 20 26 26 H 1.48493 * 109.47084 * 90.00123 * 25 23 21 27 27 H 1.48501 * 109.46953 * 210.00437 * 25 23 21 28 28 H 1.48497 * 109.47072 * 329.99847 * 25 23 21 29 29 C 1.46932 * 120.62761 * 174.28642 * 14 12 11 30 30 H 1.09000 * 109.47073 * 274.83792 * 1 2 3 31 31 H 1.09000 * 109.47177 * 34.83345 * 1 2 3 32 32 H 1.09000 * 109.47170 * 154.83681 * 1 2 3 33 33 H 1.07998 * 120.09009 * 359.97438 * 5 4 3 34 34 H 1.08002 * 119.45301 * 179.97438 * 6 5 4 35 35 H 1.07995 * 119.57794 * 179.97438 * 7 6 5 36 36 H 1.08005 * 120.19056 * 180.02562 * 8 7 6 37 37 H 1.07999 * 121.01855 * 0.02562 * 10 9 8 38 38 H 1.08995 * 109.58703 * 353.41899 * 15 14 12 39 39 H 1.09006 * 109.58503 * 113.84573 * 15 14 12 40 40 H 1.08999 * 109.50156 * 65.32335 * 16 15 14 41 41 H 1.09005 * 109.49264 * 185.38231 * 16 15 14 42 42 H 1.09006 * 109.46212 * 301.34876 * 17 16 15 43 43 H 1.08995 * 109.46137 * 181.38717 * 17 16 15 44 44 H 0.97000 * 119.99902 * 24.91754 * 20 18 17 45 45 H 0.96997 * 119.99446 * 180.02562 * 24 23 21 46 46 H 1.09003 * 109.58852 * 6.58311 * 29 14 12 47 47 H 1.09002 * 109.70204 * 246.22491 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1458 1.1416 0.0000 4 6 3.4825 1.1998 -0.0005 5 6 4.1496 2.4366 0.0000 6 6 5.5104 2.4717 0.0000 7 6 6.2606 1.2974 -0.0010 8 6 5.6512 0.0801 -0.0016 9 6 4.2476 0.0059 -0.0016 10 6 3.5838 -1.2324 0.0041 11 6 2.1934 -1.2267 -0.0018 12 6 1.4434 -2.4997 -0.0018 13 8 0.5994 -2.7081 0.8480 14 7 1.6950 -3.4300 -0.9440 15 6 2.6196 -3.1447 -2.0496 16 6 1.9068 -3.4312 -3.3749 17 6 1.3675 -4.8634 -3.3604 18 6 0.3542 -5.0171 -2.2238 19 1 -0.4580 -4.3033 -2.3616 20 7 -0.1855 -6.3791 -2.2298 21 6 -1.4191 -6.6292 -1.6904 22 1 -1.9940 -5.8224 -1.2602 23 6 -1.9306 -7.9196 -1.6967 24 7 -1.2298 -8.9028 -2.2206 25 14 -3.6131 -8.2608 -0.9602 26 1 -4.6527 -8.1099 -2.0097 27 1 -3.6475 -9.6456 -0.4249 28 1 -3.8765 -7.2984 0.1396 29 6 1.0493 -4.7486 -0.8854 30 1 -0.3633 0.0867 1.0240 31 1 -0.3633 0.8435 -0.5870 32 1 -0.3633 -0.9301 -0.4370 33 1 3.5842 3.3568 0.0005 34 1 6.0171 3.4255 0.0000 35 1 7.3390 1.3537 -0.0014 36 1 6.2428 -0.8235 -0.0020 37 1 4.1366 -2.1602 0.0091 38 1 2.9188 -2.0972 -2.0146 39 1 3.5001 -3.7814 -1.9631 40 1 1.0800 -2.7324 -3.5019 41 1 2.6108 -3.3155 -4.1991 42 1 2.1917 -5.5604 -3.2086 43 1 0.8812 -5.0780 -4.3119 44 1 0.3309 -7.1037 -2.6160 45 1 -1.5875 -9.8044 -2.2253 46 1 0.3124 -4.7592 -0.0823 47 1 1.8000 -5.5175 -0.7028 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999289782.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:19 Heat of formation + Delta-G solvation = 11.041514 kcal Electronic energy + Delta-G solvation = -29154.185622 eV Core-core repulsion = 25300.896647 eV Total energy + Delta-G solvation = -3853.288975 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.25848 -40.93661 -38.89729 -38.00281 -36.29865 -34.79268 -33.78195 -33.02716 -32.76746 -31.35766 -29.90176 -28.87529 -26.96156 -25.90212 -25.07377 -23.66817 -23.34115 -23.05314 -22.00194 -20.59874 -19.26088 -19.13742 -18.36771 -17.90248 -17.21106 -16.83511 -16.66619 -16.23432 -15.71492 -15.55231 -15.50440 -15.41361 -15.35161 -14.92003 -14.88264 -14.31261 -14.18310 -14.07392 -14.04378 -13.81383 -13.70044 -13.22069 -13.13391 -12.90922 -12.69933 -12.53176 -12.40216 -12.35621 -12.23176 -12.10930 -11.92371 -11.74775 -11.54514 -11.36933 -11.18153 -11.07365 -10.56028 -9.85513 -9.69422 -9.23979 -9.02749 -7.99169 -5.28109 -0.76731 -0.39691 0.87999 1.41128 1.44561 1.45411 1.54278 1.76440 2.01892 2.52977 3.00417 3.06329 3.27394 3.34385 3.52625 3.56823 3.71656 3.82703 3.90229 4.00994 4.03684 4.17386 4.23504 4.30027 4.33360 4.36396 4.37792 4.49234 4.55216 4.58964 4.69036 4.70095 4.76787 4.84090 4.86358 4.89828 5.00642 5.04030 5.10325 5.13474 5.36126 5.38352 5.41795 5.42823 5.44279 5.50014 5.54361 5.88124 6.23677 6.31111 6.79061 6.99724 7.30703 8.02384 8.28007 9.23344 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.021488 B = 0.002601 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.738157 B =10761.018034 C =11439.343793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.188 3.812 3 N -0.495 5.495 4 C 0.121 3.879 5 C -0.122 4.122 6 C -0.077 4.077 7 C -0.117 4.117 8 C -0.087 4.087 9 C -0.125 4.125 10 C -0.003 4.003 11 C -0.191 4.191 12 C 0.561 3.439 13 O -0.574 6.574 14 N -0.594 5.594 15 C 0.101 3.899 16 C -0.121 4.121 17 C -0.117 4.117 18 C 0.167 3.833 19 H 0.029 0.971 20 N -0.728 5.728 21 C -0.244 4.244 22 H 0.065 0.935 23 C -0.067 4.067 24 N -0.963 5.963 25 Si 0.966 3.034 26 H -0.284 1.284 27 H -0.291 1.291 28 H -0.277 1.277 29 C 0.108 3.892 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.061 0.939 33 H 0.139 0.861 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.160 0.840 37 H 0.170 0.830 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.111 0.889 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.378 0.622 45 H 0.253 0.747 46 H 0.052 0.948 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.020 23.674 0.131 31.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.035 3.965 3 N -0.205 5.205 4 C 0.000 4.000 5 C -0.141 4.141 6 C -0.097 4.097 7 C -0.134 4.134 8 C -0.106 4.106 9 C -0.127 4.127 10 C -0.029 4.029 11 C -0.197 4.197 12 C 0.349 3.651 13 O -0.455 6.455 14 N -0.326 5.326 15 C -0.020 4.020 16 C -0.160 4.160 17 C -0.155 4.155 18 C 0.058 3.942 19 H 0.048 0.952 20 N -0.368 5.368 21 C -0.376 4.376 22 H 0.083 0.917 23 C -0.260 4.260 24 N -0.613 5.613 25 Si 0.795 3.205 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.203 1.203 29 C -0.017 4.017 30 H 0.101 0.899 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.157 0.843 34 H 0.180 0.820 35 H 0.181 0.819 36 H 0.178 0.822 37 H 0.187 0.813 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.076 0.924 41 H 0.129 0.871 42 H 0.091 0.909 43 H 0.080 0.920 44 H 0.211 0.789 45 H 0.062 0.938 46 H 0.070 0.930 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 20.014 24.412 0.634 31.574 hybrid contribution -1.077 -1.783 0.496 2.141 sum 18.938 22.630 1.130 29.530 Atomic orbital electron populations 1.20763 0.88189 1.03237 1.03853 1.21439 0.97371 0.86760 0.90941 1.67808 1.09610 1.27735 1.15304 1.19440 0.88737 0.94714 0.97158 1.21006 0.95447 0.95699 1.01932 1.21413 0.92747 1.00678 0.94822 1.21398 1.02226 0.91487 0.98328 1.21396 0.91111 1.00600 0.97484 1.18968 0.96345 0.92680 1.04740 1.22190 0.91694 0.99124 0.89918 1.20584 0.95408 0.93584 1.10103 1.18454 0.81999 0.83485 0.81158 1.90792 1.35038 1.79726 1.39905 1.48221 1.45096 1.13613 1.25648 1.22161 0.92150 1.02932 0.84796 1.21862 1.00982 0.95361 0.97764 1.21728 0.98226 0.97895 0.97646 1.20636 0.94211 0.86238 0.93153 0.95241 1.42490 1.18405 1.05004 1.70922 1.19498 0.94621 0.93193 1.30240 0.91736 1.25459 1.02125 0.95742 1.02659 1.69784 1.39342 1.00088 1.52061 0.85254 0.80271 0.76834 0.78121 1.21112 1.21725 1.20270 1.22295 0.96604 0.82310 1.00518 0.89866 0.88868 0.92039 0.84272 0.82014 0.81885 0.82221 0.81261 0.88548 0.88464 0.92437 0.87095 0.90928 0.92008 0.78898 0.93831 0.92976 0.91420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.80 9.40 71.24 0.67 -2.13 16 2 C 0.19 5.21 6.82 43.28 0.30 5.50 16 3 N -0.50 -13.10 10.20 -175.85 -1.79 -14.89 16 4 C 0.12 2.65 6.61 40.29 0.27 2.91 16 5 C -0.12 -1.95 9.97 22.34 0.22 -1.73 16 6 C -0.08 -0.72 9.94 22.05 0.22 -0.50 16 7 C -0.12 -0.91 9.96 22.05 0.22 -0.69 16 8 C -0.09 -0.95 9.77 22.34 0.22 -0.73 16 9 C -0.13 -2.28 5.74 -21.28 -0.12 -2.40 16 10 C 0.00 -0.06 7.67 23.01 0.18 0.11 16 11 C -0.19 -5.09 4.61 -20.00 -0.09 -5.18 16 12 C 0.56 18.42 6.06 86.76 0.53 18.95 16 13 O -0.57 -24.09 15.32 -3.93 -0.06 -24.15 16 14 N -0.59 -17.72 2.97 -822.40 -2.44 -20.17 16 15 C 0.10 2.04 5.61 86.36 0.48 2.52 16 16 C -0.12 -2.58 6.08 30.67 0.19 -2.39 16 17 C -0.12 -3.44 5.36 30.62 0.16 -3.27 16 18 C 0.17 6.66 2.92 45.07 0.13 6.79 16 19 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 20 N -0.73 -36.68 5.13 -322.57 -1.65 -38.34 16 21 C -0.24 -13.89 9.93 84.03 0.83 -13.06 16 22 H 0.06 3.70 7.83 -2.91 -0.02 3.67 16 23 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 24 N -0.96 -58.63 13.06 21.65 0.28 -58.35 16 25 Si 0.97 47.46 29.55 68.60 2.03 49.49 16 26 H -0.28 -13.62 7.11 99.48 0.71 -12.92 16 27 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 28 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 29 C 0.11 4.09 6.03 86.36 0.52 4.61 16 30 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 31 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.06 1.88 6.50 -2.39 -0.02 1.86 16 33 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 34 H 0.16 0.48 8.06 -2.91 -0.02 0.45 16 35 H 0.16 0.21 8.06 -2.91 -0.02 0.19 16 36 H 0.16 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.17 2.36 7.80 -2.91 -0.02 2.33 16 38 H 0.10 1.67 5.39 -2.39 -0.01 1.66 16 39 H 0.10 1.50 8.14 -2.38 -0.02 1.49 16 40 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.38 19.93 7.80 -92.71 -0.72 19.20 16 45 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 46 H 0.05 2.39 7.00 -2.39 -0.02 2.38 16 47 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -76.48 381.60 2.01 -74.47 By element: Atomic # 1 Polarization: 25.79 SS G_CDS: 0.27 Total: 26.06 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: 5.39 Total: 5.88 kcal Atomic # 7 Polarization: -126.13 SS G_CDS: -5.61 Total: -131.74 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.06 Total: -24.15 kcal Atomic # 14 Polarization: 47.46 SS G_CDS: 2.03 Total: 49.49 kcal Total: -76.48 2.01 -74.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999289782.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.508 kcal (2) G-P(sol) polarization free energy of solvation -76.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds