Wall clock time and date at job start Tue Mar 31 2020 22:21:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39232 * 119.15330 * 2 1 4 4 C 1.36625 * 119.89970 * 179.97438 * 3 2 1 5 5 C 1.40792 * 118.15880 * 0.02562 * 4 3 2 6 6 C 1.40480 * 121.25390 * 180.02562 * 5 4 3 7 7 C 1.36319 * 120.08389 * 179.97438 * 6 5 4 8 8 C 1.38914 * 121.05527 * 359.77078 * 7 6 5 9 9 C 1.38708 * 120.72762 * 0.49313 * 8 7 6 10 10 C 1.47428 * 120.33254 * 179.76002 * 9 8 7 11 11 O 1.21611 * 120.00166 * 132.36457 * 10 9 8 12 12 N 1.34773 * 120.00104 * 312.36688 * 10 9 8 13 13 C 1.46928 * 120.63217 * 174.38326 * 12 10 9 14 14 C 1.53192 * 108.77953 * 126.41474 * 13 12 10 15 15 C 1.53038 * 109.31367 * 54.63403 * 14 13 12 16 16 C 1.53048 * 109.53711 * 298.63742 * 15 14 13 17 17 H 1.08996 * 109.49735 * 301.38042 * 16 15 14 18 18 N 1.46498 * 109.49891 * 181.31526 * 16 15 14 19 19 C 1.36939 * 119.99893 * 154.99923 * 18 16 15 20 20 H 1.07994 * 120.00005 * 359.97438 * 19 18 16 21 21 C 1.38815 * 119.99683 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99778 * 359.72941 * 21 19 18 23 23 Si 1.86801 * 119.99816 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46672 * 90.00142 * 23 21 19 25 25 H 1.48502 * 109.46928 * 210.00076 * 23 21 19 26 26 H 1.48494 * 109.47024 * 330.00414 * 23 21 19 27 27 C 1.46927 * 120.63042 * 354.40447 * 12 10 9 28 28 C 1.41555 * 118.94865 * 359.97438 * 5 4 3 29 29 N 1.31235 * 119.15204 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47197 * 90.00064 * 1 2 3 31 31 H 1.08999 * 109.46797 * 209.99881 * 1 2 3 32 32 H 1.08995 * 109.47246 * 329.99584 * 1 2 3 33 33 H 1.08001 * 120.04481 * 0.02562 * 3 2 1 34 34 H 1.08005 * 120.91951 * 180.02562 * 4 3 2 35 35 H 1.08001 * 119.96181 * 359.95180 * 6 5 4 36 36 H 1.07999 * 119.47028 * 180.02562 * 7 6 5 37 37 H 1.07999 * 119.63452 * 180.28228 * 8 7 6 38 38 H 1.08998 * 109.58877 * 6.62136 * 13 12 10 39 39 H 1.09003 * 109.70560 * 246.27087 * 13 12 10 40 40 H 1.08999 * 109.49332 * 294.68242 * 14 13 12 41 41 H 1.09000 * 109.49949 * 174.59055 * 14 13 12 42 42 H 1.08996 * 109.46308 * 178.61996 * 15 14 13 43 43 H 1.09001 * 109.44946 * 58.64825 * 15 14 13 44 44 H 0.97005 * 119.99680 * 335.00489 * 18 16 15 45 45 H 0.97005 * 119.99890 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.58603 * 113.80374 * 27 12 10 47 47 H 1.08995 * 109.58394 * 353.37049 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2337 0.0005 5 6 4.2320 0.0012 0.0005 6 6 5.6356 -0.0564 0.0016 7 6 6.2700 -1.2629 0.0021 8 6 5.5502 -2.4510 0.0063 9 6 4.1632 -2.4394 -0.0002 10 6 3.4080 -3.7056 -0.0009 11 8 2.4835 -3.8626 0.7733 12 7 3.7423 -4.6890 -0.8597 13 6 3.0818 -5.9997 -0.7907 14 6 2.5200 -6.3422 -2.1742 15 6 3.6423 -6.2578 -3.2112 16 6 4.1938 -4.8308 -3.2535 17 1 3.3904 -4.1375 -3.5021 18 7 5.2466 -4.7433 -4.2685 19 6 5.5334 -3.5398 -4.8556 20 1 4.9833 -2.6553 -4.5706 21 6 6.5313 -3.4569 -5.8169 22 7 7.2054 -4.5340 -6.1603 23 14 6.9221 -1.8154 -6.6183 24 1 7.9681 -1.1162 -5.8295 25 1 7.4144 -2.0441 -8.0005 26 1 5.6945 -0.9811 -6.6617 27 6 4.7746 -4.4712 -1.8823 28 6 3.4788 -1.1973 0.0005 29 7 2.1464 -1.1461 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6323 2.1436 0.0004 34 1 4.0943 2.1675 0.0010 35 1 6.2129 0.8564 0.0016 36 1 7.3495 -1.2956 0.0033 37 1 6.0764 -3.3942 0.0112 38 1 2.2689 -5.9615 -0.0655 39 1 3.8034 -6.7596 -0.4910 40 1 1.7322 -5.6345 -2.4323 41 1 2.1119 -7.3528 -2.1611 42 1 3.2507 -6.5249 -4.1927 43 1 4.4409 -6.9478 -2.9387 44 1 5.7404 -5.5380 -4.5248 45 1 7.9025 -4.4761 -6.8324 46 1 5.6361 -5.1052 -1.6727 47 1 5.0786 -3.4245 -1.8773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999453790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:24 Heat of formation + Delta-G solvation = 32.999391 kcal Electronic energy + Delta-G solvation = -29867.800818 eV Core-core repulsion = 26015.464007 eV Total energy + Delta-G solvation = -3852.336810 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.07731 -39.61755 -37.34722 -37.01913 -34.24875 -33.61599 -32.44655 -31.99902 -31.33215 -30.02305 -28.16652 -27.94865 -25.38035 -24.07826 -23.85768 -23.07470 -22.48755 -21.53350 -20.27210 -18.97369 -18.27185 -17.28527 -17.09728 -16.50426 -16.15790 -15.50713 -15.09477 -14.79947 -14.68245 -14.44664 -14.16304 -13.98307 -13.84784 -13.58055 -13.36930 -13.11362 -13.08776 -12.96598 -12.51211 -12.42671 -12.27468 -12.23605 -12.06402 -11.44384 -11.41322 -11.23670 -11.02957 -10.86474 -10.64437 -10.50151 -10.47806 -10.25949 -9.97627 -9.71063 -9.69925 -9.26753 -9.08629 -8.68664 -8.31745 -8.17408 -7.03434 -5.83574 -3.13263 0.20201 0.78216 1.79181 2.76553 3.05778 3.36495 3.38327 3.44528 3.45900 4.08899 4.12345 4.42739 4.52621 4.59390 4.72389 4.78395 4.90522 5.05239 5.15097 5.22279 5.25537 5.27723 5.33329 5.40554 5.45309 5.52103 5.59734 5.64540 5.74900 5.82337 5.83119 5.88407 5.93683 5.95686 5.99899 6.11622 6.15315 6.19797 6.29092 6.33713 6.37675 6.39093 6.45807 6.74715 6.76007 6.83742 6.98266 7.64328 7.72791 7.99728 8.34425 8.49662 9.46460 10.01243 10.37195 11.38638 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008760 B = 0.004631 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.439162 B = 6044.655635 C = 7721.731359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.158 3.842 3 C -0.176 4.176 4 C -0.053 4.053 5 C -0.114 4.114 6 C -0.076 4.076 7 C -0.120 4.120 8 C -0.055 4.055 9 C -0.102 4.102 10 C 0.568 3.432 11 O -0.529 6.529 12 N -0.603 5.603 13 C 0.115 3.885 14 C -0.129 4.129 15 C -0.125 4.125 16 C 0.168 3.832 17 H 0.050 0.950 18 N -0.718 5.718 19 C -0.242 4.242 20 H 0.069 0.931 21 C -0.008 4.008 22 N -0.930 5.930 23 Si 0.903 3.097 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.082 3.918 28 C 0.169 3.831 29 N -0.456 5.456 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.136 0.864 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.136 0.864 37 H 0.138 0.862 38 H 0.088 0.912 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.061 0.939 44 H 0.386 0.614 45 H 0.256 0.744 46 H 0.064 0.936 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.911 7.295 14.178 17.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.005 3.995 3 C -0.196 4.196 4 C -0.079 4.079 5 C -0.116 4.116 6 C -0.095 4.095 7 C -0.138 4.138 8 C -0.076 4.076 9 C -0.106 4.106 10 C 0.356 3.644 11 O -0.406 6.406 12 N -0.337 5.337 13 C -0.008 4.008 14 C -0.168 4.168 15 C -0.164 4.164 16 C 0.057 3.943 17 H 0.068 0.932 18 N -0.359 5.359 19 C -0.373 4.373 20 H 0.087 0.913 21 C -0.205 4.205 22 N -0.578 5.578 23 Si 0.734 3.266 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C -0.044 4.044 28 C 0.046 3.954 29 N -0.165 5.165 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.154 0.846 34 H 0.158 0.842 35 H 0.151 0.849 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.106 0.894 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.080 0.920 44 H 0.220 0.780 45 H 0.066 0.934 46 H 0.083 0.917 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -7.777 6.507 14.493 17.688 hybrid contribution 1.191 1.509 -0.781 2.075 sum -6.586 8.016 13.712 17.195 Atomic orbital electron populations 1.20776 0.88696 1.03572 1.03311 1.21572 0.97306 0.88077 0.92516 1.21701 0.95051 0.99222 1.03590 1.21442 0.94470 0.97032 0.94927 1.18769 0.94844 0.93850 1.04122 1.21108 0.92488 0.98703 0.97192 1.20851 1.00778 0.91826 1.00315 1.21476 0.92255 0.99518 0.94323 1.19724 0.93423 0.92446 1.05026 1.17907 0.83027 0.82711 0.80749 1.90741 1.28631 1.80569 1.40621 1.48148 1.40084 1.12458 1.32999 1.21546 0.97560 0.83577 0.98072 1.21871 0.98673 1.01487 0.94740 1.21819 0.97584 0.98145 0.98814 1.20484 0.91631 0.94465 0.87761 0.93187 1.42382 1.40631 1.09352 1.43529 1.19220 1.14564 0.87438 1.16058 0.91304 1.24714 0.98916 0.97071 0.99761 1.69657 1.25993 1.27042 1.35143 0.86247 0.78112 0.83444 0.78784 1.21613 1.21685 1.20759 1.23056 0.89824 1.02745 0.88731 1.18449 0.89132 0.91353 0.96486 1.67908 1.08100 1.28415 1.12064 0.90120 0.90109 0.90672 0.84586 0.84234 0.84935 0.84655 0.84443 0.89409 0.91734 0.91652 0.91093 0.91484 0.92042 0.78015 0.93431 0.91733 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.15 36.01 0.37 -0.71 16 2 C 0.16 2.14 6.78 -82.47 -0.56 1.59 16 3 C -0.18 -1.92 9.64 -39.79 -0.38 -2.31 16 4 C -0.05 -0.59 9.89 -39.20 -0.39 -0.98 16 5 C -0.11 -1.59 5.74 -106.82 -0.61 -2.20 16 6 C -0.08 -0.91 9.75 -39.43 -0.38 -1.29 16 7 C -0.12 -1.48 9.93 -40.02 -0.40 -1.88 16 8 C -0.06 -0.80 7.49 -39.16 -0.29 -1.09 16 9 C -0.10 -1.75 4.89 -104.62 -0.51 -2.26 16 10 C 0.57 10.49 6.98 -12.52 -0.09 10.40 16 11 O -0.53 -11.00 15.90 5.27 0.08 -10.91 16 12 N -0.60 -10.16 2.97 -174.03 -0.52 -10.68 16 13 C 0.11 1.68 6.44 -3.71 -0.02 1.66 16 14 C -0.13 -1.82 6.08 -26.61 -0.16 -1.98 16 15 C -0.13 -2.06 5.35 -26.69 -0.14 -2.20 16 16 C 0.17 3.32 2.92 -67.80 -0.20 3.12 16 17 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 18 N -0.72 -17.32 5.12 -53.31 -0.27 -17.59 16 19 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.93 -27.19 13.06 55.49 0.72 -26.46 16 23 Si 0.90 21.91 29.55 -169.99 -5.02 16.88 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 C 0.08 1.45 4.79 -3.71 -0.02 1.44 16 28 C 0.17 2.87 6.59 -84.58 -0.56 2.32 16 29 N -0.46 -7.93 9.25 -7.01 -0.06 -7.99 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.14 1.01 8.06 -52.49 -0.42 0.58 16 34 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 36 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.14 1.81 7.24 -52.49 -0.38 1.43 16 38 H 0.09 1.32 7.00 -51.93 -0.36 0.96 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.39 9.81 7.80 -40.82 -0.32 9.50 16 45 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 47 H 0.09 1.63 5.10 -51.93 -0.26 1.36 16 LS Contribution 382.81 15.07 5.77 5.77 Total: -1.00 -33.88 382.81 -10.69 -44.57 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.78 Total: 9.79 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -4.60 Total: -3.37 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.13 Total: -62.73 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.91 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.88 -10.69 -44.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999453790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.567 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds