Wall clock time and date at job start Tue Mar 31 2020 22:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.39232 * 119.15330 * 2 1 4 4 C 1.36625 * 119.89970 * 179.97438 * 3 2 1 5 5 C 1.40792 * 118.15880 * 0.02562 * 4 3 2 6 6 C 1.40480 * 121.25390 * 180.02562 * 5 4 3 7 7 C 1.36319 * 120.08389 * 179.97438 * 6 5 4 8 8 C 1.38914 * 121.05527 * 359.77078 * 7 6 5 9 9 C 1.38708 * 120.72762 * 0.49313 * 8 7 6 10 10 C 1.47428 * 120.33254 * 179.76002 * 9 8 7 11 11 O 1.21611 * 120.00166 * 132.36457 * 10 9 8 12 12 N 1.34773 * 120.00104 * 312.36688 * 10 9 8 13 13 C 1.46928 * 120.63217 * 174.38326 * 12 10 9 14 14 C 1.53192 * 108.77953 * 126.41474 * 13 12 10 15 15 C 1.53038 * 109.31367 * 54.63403 * 14 13 12 16 16 C 1.53048 * 109.53711 * 298.63742 * 15 14 13 17 17 H 1.08996 * 109.49735 * 301.38042 * 16 15 14 18 18 N 1.46498 * 109.49891 * 181.31526 * 16 15 14 19 19 C 1.36939 * 119.99893 * 154.99923 * 18 16 15 20 20 H 1.07994 * 120.00005 * 359.97438 * 19 18 16 21 21 C 1.38815 * 119.99683 * 179.97438 * 19 18 16 22 22 N 1.31618 * 119.99778 * 359.72941 * 21 19 18 23 23 Si 1.86801 * 119.99816 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46672 * 90.00142 * 23 21 19 25 25 H 1.48502 * 109.46928 * 210.00076 * 23 21 19 26 26 H 1.48494 * 109.47024 * 330.00414 * 23 21 19 27 27 C 1.46927 * 120.63042 * 354.40447 * 12 10 9 28 28 C 1.41555 * 118.94865 * 359.97438 * 5 4 3 29 29 N 1.31235 * 119.15204 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47197 * 90.00064 * 1 2 3 31 31 H 1.08999 * 109.46797 * 209.99881 * 1 2 3 32 32 H 1.08995 * 109.47246 * 329.99584 * 1 2 3 33 33 H 1.08001 * 120.04481 * 0.02562 * 3 2 1 34 34 H 1.08005 * 120.91951 * 180.02562 * 4 3 2 35 35 H 1.08001 * 119.96181 * 359.95180 * 6 5 4 36 36 H 1.07999 * 119.47028 * 180.02562 * 7 6 5 37 37 H 1.07999 * 119.63452 * 180.28228 * 8 7 6 38 38 H 1.08998 * 109.58877 * 6.62136 * 13 12 10 39 39 H 1.09003 * 109.70560 * 246.27087 * 13 12 10 40 40 H 1.08999 * 109.49332 * 294.68242 * 14 13 12 41 41 H 1.09000 * 109.49949 * 174.59055 * 14 13 12 42 42 H 1.08996 * 109.46308 * 178.61996 * 15 14 13 43 43 H 1.09001 * 109.44946 * 58.64825 * 15 14 13 44 44 H 0.97005 * 119.99680 * 335.00489 * 18 16 15 45 45 H 0.97005 * 119.99890 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.58603 * 113.80374 * 27 12 10 47 47 H 1.08995 * 109.58394 * 353.37049 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2337 0.0005 5 6 4.2320 0.0012 0.0005 6 6 5.6356 -0.0564 0.0016 7 6 6.2700 -1.2629 0.0021 8 6 5.5502 -2.4510 0.0063 9 6 4.1632 -2.4394 -0.0002 10 6 3.4080 -3.7056 -0.0009 11 8 2.4835 -3.8626 0.7733 12 7 3.7423 -4.6890 -0.8597 13 6 3.0818 -5.9997 -0.7907 14 6 2.5200 -6.3422 -2.1742 15 6 3.6423 -6.2578 -3.2112 16 6 4.1938 -4.8308 -3.2535 17 1 3.3904 -4.1375 -3.5021 18 7 5.2466 -4.7433 -4.2685 19 6 5.5334 -3.5398 -4.8556 20 1 4.9833 -2.6553 -4.5706 21 6 6.5313 -3.4569 -5.8169 22 7 7.2054 -4.5340 -6.1603 23 14 6.9221 -1.8154 -6.6183 24 1 7.9681 -1.1162 -5.8295 25 1 7.4144 -2.0441 -8.0005 26 1 5.6945 -0.9811 -6.6617 27 6 4.7746 -4.4712 -1.8823 28 6 3.4788 -1.1973 0.0005 29 7 2.1464 -1.1461 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6323 2.1436 0.0004 34 1 4.0943 2.1675 0.0010 35 1 6.2129 0.8564 0.0016 36 1 7.3495 -1.2956 0.0033 37 1 6.0764 -3.3942 0.0112 38 1 2.2689 -5.9615 -0.0655 39 1 3.8034 -6.7596 -0.4910 40 1 1.7322 -5.6345 -2.4323 41 1 2.1119 -7.3528 -2.1611 42 1 3.2507 -6.5249 -4.1927 43 1 4.4409 -6.9478 -2.9387 44 1 5.7404 -5.5380 -4.5248 45 1 7.9025 -4.4761 -6.8324 46 1 5.6361 -5.1052 -1.6727 47 1 5.0786 -3.4245 -1.8773 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999453790.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:23 Heat of formation + Delta-G solvation = 12.126607 kcal Electronic energy + Delta-G solvation = -29868.705929 eV Core-core repulsion = 26015.464007 eV Total energy + Delta-G solvation = -3853.241922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.14131 -40.90185 -38.69328 -38.17749 -36.03956 -34.66570 -33.84888 -33.08424 -32.90149 -31.12084 -29.87490 -28.87740 -26.70526 -25.92333 -24.87191 -24.32273 -23.42168 -22.95445 -21.71329 -20.26796 -19.27836 -19.12195 -18.44017 -17.67202 -17.26811 -16.77137 -16.68529 -16.10192 -15.77942 -15.64307 -15.52759 -15.43151 -15.25240 -14.98144 -14.69323 -14.28567 -14.11262 -14.00445 -13.83266 -13.72179 -13.61602 -13.18455 -13.08808 -12.99892 -12.87823 -12.54339 -12.35830 -12.32826 -12.20099 -12.01418 -11.94390 -11.62777 -11.54669 -11.44772 -11.16141 -10.92982 -10.33173 -9.77294 -9.67745 -9.26070 -8.98808 -7.95842 -5.25353 -0.78468 -0.20348 0.78162 1.46207 1.47167 1.55533 1.63361 1.85705 2.11350 2.54630 3.05714 3.17479 3.33115 3.37571 3.67525 3.74713 3.81114 3.90197 3.93129 3.95238 4.01492 4.12782 4.19005 4.29704 4.34427 4.36710 4.41896 4.56500 4.58231 4.68052 4.71314 4.74401 4.83359 4.90425 4.91620 4.94620 4.98314 5.04846 5.05301 5.14302 5.21143 5.32577 5.34133 5.40737 5.46580 5.54383 5.60849 5.82376 6.24122 6.33536 7.00885 7.12006 7.33223 8.03397 8.31237 9.26713 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008760 B = 0.004631 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.439162 B = 6044.655635 C = 7721.731359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.144 3.856 3 C -0.176 4.176 4 C -0.046 4.046 5 C -0.136 4.136 6 C -0.061 4.061 7 C -0.134 4.134 8 C -0.053 4.053 9 C -0.147 4.147 10 C 0.566 3.434 11 O -0.564 6.564 12 N -0.602 5.602 13 C 0.110 3.890 14 C -0.118 4.118 15 C -0.117 4.117 16 C 0.166 3.834 17 H 0.023 0.977 18 N -0.726 5.726 19 C -0.241 4.241 20 H 0.063 0.937 21 C -0.062 4.062 22 N -0.962 5.962 23 Si 0.963 3.037 24 H -0.280 1.280 25 H -0.294 1.294 26 H -0.278 1.278 27 C 0.099 3.901 28 C 0.138 3.862 29 N -0.513 5.513 30 H 0.086 0.914 31 H 0.060 0.940 32 H 0.111 0.889 33 H 0.178 0.822 34 H 0.184 0.816 35 H 0.175 0.825 36 H 0.165 0.835 37 H 0.141 0.859 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.074 0.926 44 H 0.379 0.621 45 H 0.253 0.747 46 H 0.074 0.926 47 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.366 9.628 14.682 18.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.008 4.008 3 C -0.195 4.195 4 C -0.071 4.071 5 C -0.138 4.138 6 C -0.079 4.079 7 C -0.152 4.152 8 C -0.074 4.074 9 C -0.151 4.151 10 C 0.355 3.645 11 O -0.443 6.443 12 N -0.334 5.334 13 C -0.012 4.012 14 C -0.156 4.156 15 C -0.155 4.155 16 C 0.057 3.943 17 H 0.041 0.959 18 N -0.366 5.366 19 C -0.373 4.373 20 H 0.081 0.919 21 C -0.255 4.255 22 N -0.612 5.612 23 Si 0.792 3.208 24 H -0.207 1.207 25 H -0.221 1.221 26 H -0.203 1.203 27 C -0.026 4.026 28 C 0.016 3.984 29 N -0.223 5.223 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.129 0.871 33 H 0.196 0.804 34 H 0.201 0.799 35 H 0.192 0.808 36 H 0.182 0.818 37 H 0.159 0.841 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.068 0.932 41 H 0.124 0.876 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.212 0.788 45 H 0.062 0.938 46 H 0.092 0.908 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -7.257 8.837 15.022 18.879 hybrid contribution 0.924 0.842 -0.894 1.536 sum -6.333 9.679 14.128 18.259 Atomic orbital electron populations 1.20871 0.86966 1.04372 1.03885 1.22267 0.98794 0.88470 0.91288 1.22121 0.95453 0.99608 1.02337 1.21982 0.94806 0.97459 0.92869 1.19154 0.95935 0.94021 1.04662 1.21617 0.91902 1.00113 0.94261 1.21216 1.02169 0.91278 1.00498 1.21663 0.91459 1.00863 0.93375 1.19802 0.94498 0.92079 1.08692 1.18265 0.82637 0.83352 0.80222 1.90692 1.30282 1.81289 1.42083 1.48172 1.39822 1.13124 1.32311 1.21751 0.98025 0.83113 0.98284 1.21810 0.97262 1.03124 0.93413 1.21730 0.98557 0.95808 0.99418 1.20590 0.89906 0.96197 0.87645 0.95915 1.42455 1.41415 1.08224 1.44522 1.19420 1.13961 0.88191 1.15722 0.91880 1.25407 0.99236 1.00116 1.00709 1.69790 1.26694 1.28817 1.35908 0.85302 0.77986 0.79939 0.77550 1.20691 1.22051 1.20302 1.22662 0.89981 1.02166 0.87759 1.18772 0.89639 0.92468 0.97567 1.67871 1.08912 1.30770 1.14782 0.89515 0.92049 0.87069 0.80448 0.79883 0.80773 0.81765 0.84102 0.89913 0.89313 0.93211 0.87563 0.92029 0.90764 0.78844 0.93846 0.90823 0.90846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 10.15 71.24 0.72 -1.33 16 2 C 0.14 3.86 6.78 42.89 0.29 4.15 16 3 C -0.18 -3.38 9.64 22.13 0.21 -3.17 16 4 C -0.05 -0.88 9.89 22.52 0.22 -0.66 16 5 C -0.14 -3.60 5.74 -21.29 -0.12 -3.73 16 6 C -0.06 -1.29 9.75 22.37 0.22 -1.07 16 7 C -0.13 -3.11 9.93 21.98 0.22 -2.89 16 8 C -0.05 -1.56 7.49 22.54 0.17 -1.40 16 9 C -0.15 -5.26 4.89 -19.86 -0.10 -5.36 16 10 C 0.57 22.04 6.98 86.66 0.60 22.64 16 11 O -0.56 -24.94 15.90 -4.07 -0.06 -25.01 16 12 N -0.60 -20.89 2.97 -822.76 -2.45 -23.33 16 13 C 0.11 3.19 6.44 86.36 0.56 3.75 16 14 C -0.12 -3.24 6.08 30.67 0.19 -3.05 16 15 C -0.12 -3.80 5.35 30.62 0.16 -3.64 16 16 C 0.17 6.74 2.92 45.07 0.13 6.87 16 17 H 0.02 1.04 8.08 -2.39 -0.02 1.02 16 18 N -0.73 -35.61 5.12 -322.56 -1.65 -37.26 16 19 C -0.24 -13.15 9.93 84.03 0.83 -12.32 16 20 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 21 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 22 N -0.96 -56.69 13.06 21.65 0.28 -56.41 16 23 Si 0.96 44.94 29.55 68.60 2.03 46.97 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 25 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 27 C 0.10 3.62 4.79 86.36 0.41 4.04 16 28 C 0.14 4.84 6.59 40.62 0.27 5.11 16 29 N -0.51 -18.64 9.25 -176.09 -1.63 -20.27 16 30 H 0.09 1.58 8.14 -2.39 -0.02 1.57 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.11 1.32 8.07 -2.39 -0.02 1.30 16 33 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 34 H 0.18 1.79 8.06 -2.91 -0.02 1.77 16 35 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 37 H 0.14 3.79 7.24 -2.91 -0.02 3.77 16 38 H 0.08 2.53 7.00 -2.39 -0.02 2.52 16 39 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.11 2.23 8.14 -2.39 -0.02 2.22 16 42 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.38 19.56 7.80 -92.70 -0.72 18.84 16 45 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 46 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.07 2.88 5.10 -2.39 -0.01 2.87 16 Total: -1.00 -77.95 382.81 2.25 -75.70 By element: Atomic # 1 Polarization: 34.34 SS G_CDS: 0.27 Total: 34.60 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 5.46 Total: 5.00 kcal Atomic # 7 Polarization: -131.83 SS G_CDS: -5.44 Total: -137.27 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.06 Total: -25.01 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -77.95 2.25 -75.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999453790.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.831 kcal (2) G-P(sol) polarization free energy of solvation -77.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.705 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds