Wall clock time and date at job start Tue Mar 31 2020 22:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39315 * 119.11831 * 2 1 4 4 C 1.36582 * 119.90598 * 179.97438 * 3 2 1 5 5 C 1.40883 * 118.15629 * 359.95812 * 4 3 2 6 6 C 1.40186 * 121.22323 * 180.02562 * 5 4 3 7 7 C 1.38554 * 119.40309 * 179.97438 * 6 5 4 8 8 C 1.47762 * 119.80009 * 179.97438 * 7 6 5 9 9 O 1.21562 * 119.99847 * 221.87154 * 8 7 6 10 10 N 1.34780 * 120.00530 * 41.87788 * 8 7 6 11 11 C 1.46496 * 119.99440 * 355.47692 * 10 8 7 12 12 C 1.46491 * 120.00400 * 175.47544 * 10 8 7 13 13 C 1.53775 * 113.61582 * 240.00098 * 12 10 8 14 14 C 1.53783 * 87.08265 * 220.01742 * 13 12 10 15 15 N 1.46497 * 113.61624 * 139.97703 * 14 13 12 16 16 C 1.36941 * 120.00017 * 154.72752 * 15 14 13 17 17 H 1.08003 * 119.99459 * 359.97438 * 16 15 14 18 18 C 1.38805 * 120.00033 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00333 * 359.97438 * 18 16 15 20 20 Si 1.86809 * 119.99932 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47009 * 59.99383 * 20 18 16 22 22 H 1.48500 * 109.46953 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.47081 * 299.99601 * 20 18 16 24 24 C 1.53778 * 113.61789 * 142.49891 * 12 10 8 25 25 C 1.40626 * 120.39020 * 0.26974 * 7 6 5 26 26 C 1.35701 * 120.92261 * 359.46325 * 25 7 6 27 27 C 1.40760 * 120.11272 * 0.51288 * 26 25 7 28 28 N 1.31124 * 119.11271 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47064 * 270.02664 * 1 2 3 30 30 H 1.09006 * 109.46934 * 30.02052 * 1 2 3 31 31 H 1.08999 * 109.47485 * 150.02018 * 1 2 3 32 32 H 1.08005 * 120.04549 * 359.95008 * 3 2 1 33 33 H 1.07999 * 120.91589 * 180.02562 * 4 3 2 34 34 H 1.07999 * 120.29739 * 0.02562 * 6 5 4 35 35 H 1.09001 * 109.47141 * 275.13205 * 11 10 8 36 36 H 1.09003 * 109.47626 * 35.13401 * 11 10 8 37 37 H 1.09003 * 109.47405 * 155.14001 * 11 10 8 38 38 H 1.09006 * 112.90810 * 11.25118 * 12 10 8 39 39 H 1.09006 * 113.61817 * 105.47124 * 13 12 10 40 40 H 1.08997 * 113.61796 * 334.56359 * 13 12 10 41 41 H 1.09000 * 113.61288 * 270.80284 * 14 13 12 42 42 H 0.96994 * 120.00490 * 335.00792 * 15 14 13 43 43 H 0.96993 * 120.00209 * 180.02562 * 19 18 16 44 44 H 1.09003 * 113.61054 * 25.43701 * 24 12 10 45 45 H 1.08995 * 113.61964 * 254.53301 * 24 12 10 46 46 H 1.08000 * 119.54047 * 179.72342 * 25 7 6 47 47 H 1.08000 * 119.94340 * 180.25826 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5506 1.2359 0.0005 5 6 4.2324 0.0030 0.0020 6 6 5.6332 -0.0528 0.0031 7 6 6.2649 -1.2859 0.0051 8 6 7.7409 -1.3549 0.0057 9 8 8.3117 -2.1674 -0.6956 10 7 8.4544 -0.5172 0.7840 11 6 7.7730 0.5267 1.5534 12 6 9.9113 -0.6506 0.8605 13 6 10.4301 -0.9342 2.2800 14 6 11.5871 0.0286 1.9647 15 7 11.9484 0.8991 3.0862 16 6 13.2144 1.4139 3.1731 17 1 13.9465 1.1778 2.4149 18 6 13.5570 2.2382 4.2360 19 7 12.6649 2.5255 5.1602 20 14 15.2842 2.9399 4.3549 21 1 15.5662 3.7668 3.1540 22 1 15.3933 3.7829 5.5726 23 1 16.2658 1.8284 4.4322 24 6 10.6497 0.6956 0.9443 25 6 5.5096 -2.4721 0.0002 26 6 4.1531 -2.4352 0.0044 27 6 3.4803 -1.1987 0.0029 28 7 2.1450 -1.1456 0.0005 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8899 -0.5142 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6313 2.1444 -0.0008 33 1 4.0927 2.1699 0.0010 34 1 6.2147 0.8573 0.0033 35 1 7.6237 1.4035 0.9232 36 1 6.8065 0.1550 1.8937 37 1 8.3819 0.7986 2.4156 38 1 10.3159 -1.3242 0.1050 39 1 10.7492 -1.9657 2.4304 40 1 9.7666 -0.5763 3.0671 41 1 12.4504 -0.4595 1.5124 42 1 11.2923 1.1075 3.7694 43 1 12.9042 3.1019 5.9027 44 1 10.0460 1.4992 1.3663 45 1 11.1458 0.9801 0.0164 46 1 6.0162 -3.4259 -0.0028 47 1 3.5887 -3.3559 0.0047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999589944.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:37 Heat of formation + Delta-G solvation = 61.962694 kcal Electronic energy + Delta-G solvation = -28121.095084 eV Core-core repulsion = 24270.014216 eV Total energy + Delta-G solvation = -3851.080867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.34461 -40.19295 -38.31184 -37.07370 -34.98058 -33.88649 -33.19123 -32.28272 -30.56451 -29.87315 -28.44983 -27.16245 -25.20478 -24.88892 -24.12826 -23.64505 -22.49318 -22.11946 -19.98829 -18.91338 -18.42595 -17.57362 -17.16364 -17.04580 -16.37629 -15.96933 -15.47450 -15.05295 -14.84654 -14.72488 -14.55521 -14.26443 -14.07757 -13.60725 -13.42631 -13.35826 -13.11247 -13.06019 -12.81121 -12.62522 -12.55385 -12.20732 -12.04874 -11.88051 -11.69209 -11.52037 -11.28083 -10.92807 -10.91366 -10.62809 -10.50181 -10.32168 -10.07462 -9.91919 -9.80270 -9.58903 -9.04484 -8.93114 -8.57517 -8.49902 -7.02956 -5.83632 -3.12709 -0.08268 0.37604 1.57900 2.20806 2.82242 3.05037 3.40664 3.45403 3.46114 3.72287 3.78041 4.13496 4.27868 4.28864 4.41851 4.55076 4.68373 4.71700 4.92745 4.96198 5.05070 5.08439 5.11302 5.14393 5.16412 5.31594 5.37446 5.40391 5.44686 5.51706 5.54025 5.64099 5.67019 5.71256 5.81764 5.89512 5.92055 5.99245 6.11470 6.15415 6.24053 6.29704 6.37351 6.44975 6.52063 6.73849 6.98437 7.41429 7.56336 7.65077 8.09230 8.34786 9.46152 10.02361 10.37009 11.38582 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019945 B = 0.002090 C = 0.001948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1403.546780 B =13392.030672 C =14370.004810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.164 3.836 3 C -0.177 4.177 4 C -0.045 4.045 5 C -0.116 4.116 6 C -0.060 4.060 7 C -0.120 4.120 8 C 0.555 3.445 9 O -0.537 6.537 10 N -0.590 5.590 11 C 0.068 3.932 12 C 0.115 3.885 13 C -0.163 4.163 14 C 0.170 3.830 15 N -0.709 5.709 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.174 4.174 25 C -0.054 4.054 26 C -0.101 4.101 27 C 0.147 3.853 28 N -0.480 5.480 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.385 0.615 43 H 0.256 0.744 44 H 0.083 0.917 45 H 0.061 0.939 46 H 0.139 0.861 47 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.567 -3.963 -10.601 27.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.012 3.988 3 C -0.197 4.197 4 C -0.071 4.071 5 C -0.118 4.118 6 C -0.079 4.079 7 C -0.124 4.124 8 C 0.343 3.657 9 O -0.414 6.414 10 N -0.321 5.321 11 C -0.075 4.075 12 C 0.012 3.988 13 C -0.203 4.203 14 C 0.057 3.943 15 N -0.347 5.347 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.216 4.216 25 C -0.074 4.074 26 C -0.120 4.120 27 C 0.025 3.975 28 N -0.190 5.190 29 H 0.101 0.899 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.084 0.916 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.219 0.781 43 H 0.066 0.934 44 H 0.102 0.898 45 H 0.080 0.920 46 H 0.156 0.844 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -24.414 -5.162 -10.934 27.244 hybrid contribution 1.125 1.462 0.406 1.889 sum -23.288 -3.700 -10.528 25.824 Atomic orbital electron populations 1.20810 0.88512 1.03776 1.03452 1.21569 0.97253 0.88223 0.91804 1.21728 0.95024 0.99341 1.03609 1.21560 0.94549 0.97277 0.93682 1.18752 0.94285 0.94307 1.04467 1.21777 0.92868 0.97902 0.95386 1.19975 0.93614 0.94191 1.04574 1.18307 0.86505 0.80932 0.79929 1.90778 1.71670 1.37820 1.41178 1.47786 1.07696 1.32039 1.44533 1.22094 0.98143 0.90322 0.96914 1.22679 0.77091 1.00106 0.98896 1.23946 0.99623 1.00845 0.95895 1.21338 0.93069 0.90557 0.89351 1.42342 1.12295 1.55022 1.25029 1.19271 0.88897 1.23055 1.06421 0.91024 1.24766 0.98022 1.00673 0.97359 1.69642 1.33529 1.41144 1.13764 0.86252 0.84160 0.78737 0.76938 1.21208 1.21686 1.21182 1.24337 0.99686 0.95925 1.01651 1.20836 0.93219 0.97928 0.95418 1.20672 0.93600 0.96602 1.01085 1.18948 0.89076 0.92905 0.96531 1.67896 1.08351 1.28784 1.13948 0.89947 0.90387 0.90208 0.84308 0.83927 0.83836 0.92305 0.90984 0.89577 0.86629 0.91644 0.90039 0.90180 0.78118 0.93383 0.89848 0.92034 0.84357 0.84160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.14 36.01 0.37 -0.19 16 2 C 0.16 1.38 6.78 -82.49 -0.56 0.82 16 3 C -0.18 -1.24 9.64 -39.78 -0.38 -1.62 16 4 C -0.04 -0.35 9.89 -39.18 -0.39 -0.73 16 5 C -0.12 -1.17 5.74 -106.82 -0.61 -1.78 16 6 C -0.06 -0.60 7.37 -38.73 -0.29 -0.89 16 7 C -0.12 -1.44 5.15 -104.99 -0.54 -1.98 16 8 C 0.56 8.01 7.30 -12.37 -0.09 7.92 16 9 O -0.54 -9.47 16.42 5.31 0.09 -9.38 16 10 N -0.59 -8.01 3.08 -174.15 -0.54 -8.54 16 11 C 0.07 0.75 7.63 59.84 0.46 1.20 16 12 C 0.12 1.75 4.22 -67.13 -0.28 1.46 16 13 C -0.16 -2.65 7.35 -25.92 -0.19 -2.84 16 14 C 0.17 3.23 4.48 -67.12 -0.30 2.93 16 15 N -0.71 -17.08 5.40 -52.64 -0.28 -17.36 16 16 C -0.25 -6.63 9.97 -15.06 -0.15 -6.78 16 17 H 0.07 1.88 7.83 -52.48 -0.41 1.47 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 19 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 20 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 C -0.17 -2.87 7.28 -25.92 -0.19 -3.06 16 25 C -0.05 -0.59 9.53 -39.59 -0.38 -0.97 16 26 C -0.10 -1.05 9.95 -39.54 -0.39 -1.45 16 27 C 0.15 1.65 6.61 -84.78 -0.56 1.09 16 28 N -0.48 -5.25 10.23 -7.16 -0.07 -5.32 16 29 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.08 0.24 8.07 -51.93 -0.42 -0.18 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.14 0.56 8.06 -52.48 -0.42 0.14 16 33 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 34 H 0.14 1.20 5.52 -52.49 -0.29 0.91 16 35 H 0.06 0.54 6.85 -51.93 -0.36 0.19 16 36 H 0.07 0.69 6.01 -51.93 -0.31 0.38 16 37 H 0.09 1.03 6.14 -51.93 -0.32 0.71 16 38 H 0.12 1.84 7.22 -51.93 -0.37 1.47 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.08 1.33 6.97 -51.93 -0.36 0.97 16 41 H 0.08 1.53 8.10 -51.93 -0.42 1.11 16 42 H 0.38 9.77 7.92 -40.82 -0.32 9.45 16 43 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 44 H 0.08 1.39 6.60 -51.93 -0.34 1.05 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 47 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 LS Contribution 383.93 15.07 5.79 5.79 Total: -1.00 -33.14 383.93 -10.35 -43.49 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -6.45 Total: 8.39 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -4.58 Total: -7.29 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: -0.17 Total: -57.93 kcal Atomic # 8 Polarization: -9.47 SS G_CDS: 0.09 Total: -9.38 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.14 -10.35 -43.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999589944.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.452 kcal (2) G-P(sol) polarization free energy of solvation -33.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds