Wall clock time and date at job start Tue Mar 31 2020 22:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39433 * 119.54183 * 2 1 4 4 C 1.35999 * 121.08379 * 180.02562 * 3 2 1 5 5 C 1.40828 * 119.73511 * 0.02562 * 4 3 2 6 6 N 1.33268 * 120.97970 * 180.27245 * 5 4 3 7 7 C 1.31875 * 121.29719 * 180.28110 * 6 5 4 8 8 C 1.48280 * 119.24250 * 179.71503 * 7 6 5 9 9 O 1.21498 * 119.99791 * 202.84259 * 8 7 6 10 10 N 1.34775 * 119.99939 * 22.84319 * 8 7 6 11 11 C 1.46930 * 120.62790 * 359.84072 * 10 8 7 12 12 C 1.53193 * 108.77689 * 126.41554 * 11 10 8 13 13 C 1.53041 * 109.31210 * 54.62853 * 12 11 10 14 14 C 1.53036 * 109.53918 * 298.63492 * 13 12 11 15 15 H 1.09001 * 109.50160 * 301.38171 * 14 13 12 16 16 N 1.46498 * 109.49923 * 181.31692 * 14 13 12 17 17 C 1.36939 * 120.00411 * 154.99901 * 16 14 13 18 18 H 1.07998 * 119.99746 * 0.02562 * 17 16 14 19 19 C 1.38813 * 120.00000 * 179.97438 * 17 16 14 20 20 N 1.31619 * 119.99687 * 179.72408 * 19 17 16 21 21 Si 1.86794 * 120.00365 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47559 * 89.99362 * 21 19 17 23 23 H 1.48497 * 109.47485 * 209.99646 * 21 19 17 24 24 H 1.48507 * 109.46866 * 329.99704 * 21 19 17 25 25 C 1.46919 * 120.63194 * 179.85965 * 10 8 7 26 26 C 1.40277 * 121.51809 * 359.43681 * 7 6 5 27 27 C 1.36507 * 119.81915 * 0.27745 * 26 7 6 28 28 C 1.40759 * 118.24491 * 0.02562 * 27 26 7 29 29 C 1.36127 * 119.54100 * 180.02562 * 2 1 3 30 30 H 1.08994 * 109.47278 * 89.99103 * 1 2 3 31 31 H 1.09001 * 109.47080 * 209.99888 * 1 2 3 32 32 H 1.09001 * 109.46544 * 329.99452 * 1 2 3 33 33 H 1.07997 * 119.46324 * 0.03181 * 3 2 1 34 34 H 1.07991 * 120.13531 * 180.02562 * 4 3 2 35 35 H 1.08995 * 109.58909 * 6.62122 * 11 10 8 36 36 H 1.09008 * 109.58220 * 246.20006 * 11 10 8 37 37 H 1.09000 * 109.49108 * 294.68344 * 12 11 10 38 38 H 1.08991 * 109.49786 * 174.58405 * 12 11 10 39 39 H 1.08998 * 109.45417 * 178.61868 * 13 12 11 40 40 H 1.08996 * 109.44900 * 58.65352 * 13 12 11 41 41 H 0.97008 * 119.99905 * 335.00300 * 16 14 13 42 42 H 0.96995 * 120.00033 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.58710 * 113.79877 * 25 10 8 44 44 H 1.08997 * 109.59015 * 353.37423 * 25 10 8 45 45 H 1.08002 * 120.09504 * 180.24961 * 26 7 6 46 46 H 1.08006 * 120.87569 * 180.02562 * 27 26 7 47 47 H 1.08000 * 120.17902 * 359.97228 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5540 1.2497 -0.0005 5 6 4.2852 0.0460 -0.0016 6 7 5.6178 0.0530 0.0033 7 6 6.3087 -1.0703 -0.0032 8 6 7.7903 -1.0094 -0.0038 9 8 8.4368 -1.9511 -0.4178 10 7 8.4197 0.0905 0.4549 11 6 7.6514 1.2386 0.9555 12 6 8.1438 1.5850 2.3642 13 6 9.6575 1.8080 2.3306 14 6 10.3543 0.5229 1.8779 15 1 10.1021 -0.2880 2.5613 16 7 11.8049 0.7276 1.8763 17 6 12.6477 -0.3428 2.0145 18 1 12.2430 -1.3380 2.1243 19 6 14.0222 -0.1487 2.0125 20 7 14.8321 -1.1770 2.1508 21 14 14.7222 1.5725 1.8218 22 1 14.8868 2.1913 3.1617 23 1 16.0422 1.4981 1.1456 24 1 13.7941 2.3969 1.0066 25 6 9.8870 0.1645 0.4636 26 6 5.6744 -2.3214 -0.0039 27 6 4.3111 -2.3913 -0.0033 28 6 3.5824 -1.1870 -0.0027 29 6 2.1782 -1.1843 -0.0005 30 1 -0.3633 0.0002 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3632 0.8900 0.5139 33 1 1.6384 2.1388 0.0005 34 1 4.0708 2.1979 -0.0001 35 1 6.5926 0.9822 0.9912 36 1 7.8004 2.0935 0.2958 37 1 7.9120 0.7640 3.0426 38 1 7.6498 2.4932 2.7091 39 1 10.0067 2.0787 3.3271 40 1 9.8904 2.6125 1.6332 41 1 12.1684 1.6216 1.7773 42 1 15.7925 -1.0414 2.1498 43 1 10.2183 0.9318 -0.2361 44 1 10.3033 -0.8005 0.1748 45 1 6.2629 -3.2270 -0.0052 46 1 3.8050 -3.3455 -0.0034 47 1 1.6336 -2.1170 -0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999658637.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:17 Heat of formation + Delta-G solvation = 48.317016 kcal Electronic energy + Delta-G solvation = -28804.984336 eV Core-core repulsion = 24953.311748 eV Total energy + Delta-G solvation = -3851.672588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.42796 -39.79169 -37.82504 -37.16801 -34.69857 -33.87927 -32.63851 -32.08024 -31.25223 -30.62127 -28.91274 -27.75518 -25.47244 -24.40485 -23.85680 -23.16975 -22.46350 -21.63147 -20.65023 -19.38096 -18.29788 -17.53741 -17.48515 -17.08569 -16.01372 -15.60027 -15.45310 -14.81535 -14.63412 -14.61184 -14.48400 -14.22327 -14.17159 -13.82256 -13.61415 -13.48390 -13.39818 -13.06957 -12.78919 -12.62968 -12.46121 -12.41378 -11.98367 -11.87290 -11.65914 -11.43193 -11.14350 -10.93820 -10.87677 -10.66771 -10.64744 -10.28031 -10.13319 -9.84917 -9.57070 -9.19878 -9.07915 -9.02473 -8.54143 -8.32924 -7.26885 -5.74902 -3.12013 -0.11534 0.36693 1.58036 2.22485 3.04036 3.09177 3.38808 3.41213 3.46793 3.70696 3.88162 4.16749 4.31068 4.34906 4.51091 4.60170 4.62341 4.71775 4.88465 5.01106 5.07161 5.08657 5.12614 5.21246 5.30085 5.37569 5.40853 5.47304 5.56780 5.60015 5.63256 5.72715 5.76105 5.85292 5.91594 5.97632 6.00637 6.09224 6.11951 6.15402 6.26077 6.33762 6.43907 6.47279 6.74837 6.75899 6.95786 7.35682 7.64365 8.01170 8.29047 8.44019 9.21121 9.92842 10.11714 11.43121 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025655 B = 0.002425 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.125122 B =11545.611235 C =12325.834093 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C -0.102 4.102 4 C -0.082 4.082 5 C 0.114 3.886 6 N -0.434 5.434 7 C 0.127 3.873 8 C 0.560 3.440 9 O -0.529 6.529 10 N -0.581 5.581 11 C 0.077 3.923 12 C -0.131 4.131 13 C -0.130 4.130 14 C 0.174 3.826 15 H 0.060 0.940 16 N -0.742 5.742 17 C -0.247 4.247 18 H 0.092 0.908 19 C 0.006 3.994 20 N -0.931 5.931 21 Si 0.885 3.115 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.090 3.910 26 C -0.122 4.122 27 C -0.063 4.063 28 C -0.084 4.084 29 C -0.103 4.103 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.133 0.867 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.362 0.638 42 H 0.260 0.740 43 H 0.063 0.937 44 H 0.096 0.904 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.690 4.943 -3.766 33.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.078 4.078 3 C -0.122 4.122 4 C -0.101 4.101 5 C -0.009 4.009 6 N -0.146 5.146 7 C -0.026 4.026 8 C 0.345 3.655 9 O -0.405 6.405 10 N -0.313 5.313 11 C -0.045 4.045 12 C -0.170 4.170 13 C -0.168 4.168 14 C 0.063 3.937 15 H 0.078 0.922 16 N -0.384 5.384 17 C -0.376 4.376 18 H 0.110 0.890 19 C -0.190 4.190 20 N -0.578 5.578 21 Si 0.715 3.285 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.203 1.203 25 C -0.034 4.034 26 C -0.143 4.143 27 C -0.089 4.089 28 C -0.086 4.086 29 C -0.122 4.122 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.195 0.805 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.114 0.886 45 H 0.169 0.831 46 H 0.163 0.837 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -31.801 5.057 -3.936 32.440 hybrid contribution 0.374 0.495 -0.183 0.647 sum -31.428 5.552 -4.119 32.179 Atomic orbital electron populations 1.20863 0.90701 1.03170 1.02663 1.19755 0.96569 0.92994 0.98470 1.20828 0.93974 0.97866 0.99550 1.20867 0.93563 0.96871 0.98753 1.19004 0.89263 0.93029 0.99593 1.67948 1.06772 1.28729 1.11178 1.21530 0.94659 0.89533 0.96842 1.17950 0.85393 0.83005 0.79154 1.90818 1.65795 1.36316 1.47578 1.48103 1.07966 1.15310 1.59896 1.22788 0.99453 0.88259 0.94040 1.21920 0.96402 1.01509 0.97159 1.21881 0.94421 0.98708 1.01840 1.20454 0.84219 0.95604 0.93417 0.92235 1.42742 1.00405 1.06653 1.88626 1.19109 0.87496 0.88618 1.42423 0.89038 1.24686 0.95827 0.96697 1.01786 1.69706 1.02725 1.28690 1.56710 0.86546 0.78592 0.85528 0.77834 1.21083 1.21729 1.20308 1.22788 0.76197 1.03924 1.00507 1.21766 0.95135 0.98849 0.98517 1.21461 0.93647 0.97845 0.95918 1.18924 0.94777 0.93971 1.00964 1.20844 0.92128 0.98354 1.00854 0.90808 0.91271 0.91190 0.85119 0.84280 0.85041 0.91715 0.91865 0.91123 0.91499 0.92193 0.80462 0.93033 0.91865 0.88589 0.83129 0.83658 0.85109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.44 9.98 36.01 0.36 -0.08 16 2 C -0.08 -0.50 5.85 -104.93 -0.61 -1.11 16 3 C -0.10 -0.67 9.58 -39.94 -0.38 -1.05 16 4 C -0.08 -0.69 9.99 -39.41 -0.39 -1.08 16 5 C 0.11 1.23 6.61 -84.85 -0.56 0.67 16 6 N -0.43 -5.46 6.33 -7.54 -0.05 -5.51 16 7 C 0.13 1.77 6.44 -82.95 -0.53 1.24 16 8 C 0.56 9.67 7.60 -12.13 -0.09 9.58 16 9 O -0.53 -10.88 15.93 5.37 0.09 -10.79 16 10 N -0.58 -9.68 2.97 -173.72 -0.52 -10.19 16 11 C 0.08 1.03 5.97 -3.71 -0.02 1.01 16 12 C -0.13 -1.69 6.08 -26.61 -0.16 -1.85 16 13 C -0.13 -2.04 5.35 -26.69 -0.14 -2.18 16 14 C 0.17 3.45 2.92 -67.81 -0.20 3.25 16 15 H 0.06 1.28 8.08 -51.93 -0.42 0.86 16 16 N -0.74 -17.75 4.93 -53.31 -0.26 -18.01 16 17 C -0.25 -7.07 10.41 -15.06 -0.16 -7.23 16 18 H 0.09 2.85 8.06 -52.49 -0.42 2.43 16 19 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 20 N -0.93 -29.68 13.97 55.49 0.78 -28.90 16 21 Si 0.88 22.29 27.74 -169.99 -4.71 17.57 16 22 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 24 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 25 C 0.09 1.74 6.02 -3.71 -0.02 1.72 16 26 C -0.12 -1.42 9.53 -39.44 -0.38 -1.80 16 27 C -0.06 -0.57 9.88 -39.25 -0.39 -0.96 16 28 C -0.08 -0.80 5.75 -106.71 -0.61 -1.42 16 29 C -0.10 -0.74 9.37 -39.52 -0.37 -1.11 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.21 8.07 -51.93 -0.42 -0.21 16 32 H 0.07 0.21 8.08 -51.93 -0.42 -0.21 16 33 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.13 1.66 4.02 -77.73 -0.31 1.35 16 36 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.36 8.42 5.66 -40.82 -0.23 8.19 16 42 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 43 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 44 H 0.10 2.17 7.00 -51.93 -0.36 1.80 16 45 H 0.15 1.69 7.78 -52.49 -0.41 1.28 16 46 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 47 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 379.73 15.07 5.72 5.72 Total: -1.00 -34.65 379.73 -10.54 -45.19 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.82 Total: 7.24 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -4.77 Total: -2.32 kcal Atomic # 7 Polarization: -62.57 SS G_CDS: -0.05 Total: -62.62 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.65 -10.54 -45.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999658637.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.504 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds