Wall clock time and date at job start Tue Mar 31 2020 22:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39439 * 119.53776 * 2 1 4 4 C 1.35996 * 121.07989 * 179.97438 * 3 2 1 5 5 C 1.40829 * 119.73434 * 0.02562 * 4 3 2 6 6 N 1.33270 * 120.97649 * 179.97438 * 5 4 3 7 7 C 1.31879 * 121.29454 * 180.02562 * 6 5 4 8 8 C 1.48284 * 119.23846 * 179.97438 * 7 6 5 9 9 O 1.21499 * 119.99403 * 164.85649 * 8 7 6 10 10 N 1.34771 * 119.99910 * 344.85169 * 8 7 6 11 11 C 1.46939 * 120.60693 * 352.76218 * 10 8 7 12 12 C 1.53191 * 108.76980 * 233.57496 * 11 10 8 13 13 C 1.53037 * 109.33913 * 305.41380 * 12 11 10 14 14 C 1.53042 * 109.54227 * 61.34908 * 13 12 11 15 15 H 1.08999 * 109.49316 * 58.58461 * 14 13 12 16 16 N 1.46495 * 109.50022 * 178.65006 * 14 13 12 17 17 C 1.36934 * 120.00046 * 205.00224 * 16 14 13 18 18 H 1.08004 * 120.00193 * 0.02562 * 17 16 14 19 19 C 1.38811 * 120.00348 * 180.02562 * 17 16 14 20 20 N 1.31627 * 119.99662 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00376 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46979 * 90.00276 * 21 19 17 23 23 H 1.48494 * 109.47202 * 209.99924 * 21 19 17 24 24 H 1.48498 * 109.47039 * 330.00189 * 21 19 17 25 25 C 1.46922 * 120.63069 * 172.77938 * 10 8 7 26 26 C 1.40281 * 121.52217 * 0.27507 * 7 6 5 27 27 C 1.36508 * 119.81164 * 359.42133 * 26 7 6 28 28 C 1.40751 * 118.24562 * 0.57923 * 27 26 7 29 29 C 1.36133 * 119.54050 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47340 * 90.00716 * 1 2 3 31 31 H 1.09001 * 109.46870 * 210.00391 * 1 2 3 32 32 H 1.09006 * 109.47547 * 330.00157 * 1 2 3 33 33 H 1.07993 * 119.45779 * 359.97438 * 3 2 1 34 34 H 1.07996 * 120.13202 * 179.97438 * 4 3 2 35 35 H 1.08994 * 109.56204 * 113.80184 * 11 10 8 36 36 H 1.09000 * 109.61474 * 353.37529 * 11 10 8 37 37 H 1.08998 * 109.49507 * 185.44284 * 12 11 10 38 38 H 1.09003 * 109.49761 * 65.38357 * 12 11 10 39 39 H 1.08999 * 109.46153 * 181.37190 * 13 12 11 40 40 H 1.09004 * 109.46225 * 301.32671 * 13 12 11 41 41 H 0.97005 * 120.00037 * 25.00100 * 16 14 13 42 42 H 0.96993 * 119.99995 * 180.02562 * 20 19 17 43 43 H 1.09004 * 109.58466 * 6.60803 * 25 10 8 44 44 H 1.08997 * 109.70974 * 246.25137 * 25 10 8 45 45 H 1.08002 * 120.09428 * 179.72487 * 26 7 6 46 46 H 1.08007 * 120.87414 * 180.26674 * 27 26 7 47 47 H 1.07998 * 120.17862 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.2132 0.0000 4 6 3.5539 1.2498 0.0005 5 6 4.2850 0.0461 0.0005 6 7 5.6177 0.0531 0.0005 7 6 6.3086 -1.0702 0.0000 8 6 7.7902 -1.0092 -0.0005 9 8 8.4390 -1.9992 0.2739 10 7 8.4171 0.1442 -0.3056 11 6 7.6561 1.3032 -0.7920 12 6 8.2723 1.7788 -2.1115 13 6 9.7648 2.0473 -1.9061 14 6 10.4646 0.7529 -1.4852 15 1 10.3140 -0.0077 -2.2513 16 7 11.8985 1.0036 -1.3201 17 6 12.7931 -0.0244 -1.4540 18 1 12.4417 -1.0200 -1.6817 19 6 14.1517 0.2129 -1.2971 20 7 14.5801 1.4261 -1.0191 21 14 15.3721 -1.1896 -1.4791 22 1 15.8058 -1.2877 -2.8960 23 1 16.5533 -0.9330 -0.6165 24 1 14.7273 -2.4630 -1.0694 25 6 9.8738 0.2661 -0.1583 26 6 5.6743 -2.3214 -0.0063 27 6 4.3110 -2.3912 -0.0001 28 6 3.5824 -1.1870 0.0000 29 6 2.1782 -1.1844 -0.0005 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6381 2.1388 -0.0004 34 1 4.0707 2.1980 0.0001 35 1 7.7036 2.1059 -0.0562 36 1 6.6175 1.0163 -0.9563 37 1 7.7786 2.6956 -2.4339 38 1 8.1423 1.0089 -2.8721 39 1 10.2003 2.4091 -2.8376 40 1 9.8949 2.7999 -1.1284 41 1 12.2142 1.8978 -1.1160 42 1 15.5294 1.5920 -0.9099 43 1 10.2979 -0.7053 0.0960 44 1 10.1049 0.9832 0.6295 45 1 6.2629 -3.2269 -0.0110 46 1 3.8049 -3.3453 -0.0005 47 1 1.6336 -2.1170 -0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999658640.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:21 Heat of formation + Delta-G solvation = 44.234532 kcal Electronic energy + Delta-G solvation = -28746.588848 eV Core-core repulsion = 24894.739230 eV Total energy + Delta-G solvation = -3851.849618 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.40086 -39.74188 -37.76681 -37.09583 -34.56928 -33.83559 -32.62339 -32.02155 -31.06678 -30.59894 -28.50876 -27.60528 -25.40818 -24.38256 -23.94381 -23.16097 -22.47210 -21.74138 -20.57323 -19.24592 -18.27583 -17.46601 -17.09254 -17.00526 -15.93318 -15.55893 -15.47874 -14.79177 -14.66190 -14.52919 -14.41673 -14.15426 -14.08837 -13.66964 -13.54975 -13.45098 -13.38047 -13.20907 -12.79425 -12.62430 -12.31241 -12.21124 -11.91435 -11.81058 -11.58428 -11.26768 -11.02842 -10.85299 -10.79128 -10.62922 -10.51410 -10.17158 -10.09936 -9.76938 -9.67900 -9.13921 -9.05394 -8.99678 -8.52995 -8.25053 -6.95742 -5.75013 -3.04526 -0.10443 0.37851 1.59581 2.23003 3.10949 3.12923 3.47447 3.52712 3.55442 3.74727 3.89342 4.18248 4.32714 4.36834 4.52960 4.62509 4.63889 4.73445 4.90157 5.06026 5.09662 5.13735 5.22147 5.30813 5.39775 5.40658 5.43237 5.54044 5.61927 5.64917 5.74075 5.74742 5.88583 5.92222 5.97495 6.03777 6.11246 6.17689 6.24675 6.26254 6.34096 6.42853 6.49661 6.56762 6.83666 6.88562 7.07417 7.38499 7.70347 7.75609 8.32414 8.43491 9.54965 10.09432 10.45026 11.47284 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.025171 B = 0.002374 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.130468 B =11791.731942 C =12665.750091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 C -0.103 4.103 4 C -0.081 4.081 5 C 0.113 3.887 6 N -0.432 5.432 7 C 0.125 3.875 8 C 0.559 3.441 9 O -0.533 6.533 10 N -0.580 5.580 11 C 0.084 3.916 12 C -0.132 4.132 13 C -0.126 4.126 14 C 0.169 3.831 15 H 0.051 0.949 16 N -0.718 5.718 17 C -0.241 4.241 18 H 0.072 0.928 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.090 3.910 26 C -0.122 4.122 27 C -0.064 4.064 28 C -0.084 4.084 29 C -0.104 4.104 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.064 0.936 36 H 0.129 0.871 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.065 0.935 40 H 0.060 0.940 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.091 0.909 44 H 0.064 0.936 45 H 0.151 0.849 46 H 0.145 0.855 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.958 -0.760 1.342 31.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.077 4.077 3 C -0.123 4.123 4 C -0.100 4.100 5 C -0.009 4.009 6 N -0.144 5.144 7 C -0.028 4.028 8 C 0.344 3.656 9 O -0.409 6.409 10 N -0.312 5.312 11 C -0.039 4.039 12 C -0.171 4.171 13 C -0.165 4.165 14 C 0.058 3.942 15 H 0.069 0.931 16 N -0.359 5.359 17 C -0.372 4.372 18 H 0.090 0.910 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.206 1.206 25 C -0.034 4.034 26 C -0.142 4.142 27 C -0.090 4.090 28 C -0.086 4.086 29 C -0.123 4.123 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.149 0.851 34 H 0.158 0.842 35 H 0.083 0.917 36 H 0.145 0.855 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.109 0.891 44 H 0.083 0.917 45 H 0.169 0.831 46 H 0.163 0.837 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -31.073 -0.582 1.469 31.113 hybrid contribution 0.536 -1.115 0.039 1.238 sum -30.537 -1.697 1.508 30.622 Atomic orbital electron populations 1.20864 0.90714 1.03144 1.02674 1.19758 0.96558 0.93001 0.98430 1.20830 0.93984 0.97860 0.99601 1.20879 0.93559 0.96909 0.98608 1.19022 0.89318 0.93011 0.99585 1.68068 1.06704 1.28739 1.10925 1.21568 0.94744 0.89479 0.96998 1.17957 0.85381 0.83637 0.78636 1.90796 1.65727 1.34458 1.49916 1.48131 1.08992 1.11769 1.62270 1.22702 0.98372 0.87860 0.94961 1.21942 0.96610 1.00993 0.97538 1.21840 0.94087 0.98746 1.01804 1.20478 0.85303 0.94782 0.93628 0.93131 1.42384 0.98954 1.09906 1.84611 1.19285 0.87415 0.90012 1.40467 0.91019 1.24752 0.96985 0.96627 1.02451 1.69666 1.14013 1.19194 1.55202 0.86183 0.81032 0.81595 0.77402 1.21718 1.21769 1.20596 1.22864 0.76176 1.03479 1.00925 1.21775 0.95092 0.98934 0.98445 1.21453 0.93664 0.97816 0.96088 1.18928 0.94773 0.93994 1.00923 1.20841 0.92133 0.98333 1.00963 0.90785 0.91306 0.91192 0.85106 0.84230 0.91736 0.85464 0.91198 0.92073 0.91609 0.92087 0.78067 0.93510 0.89085 0.91730 0.83133 0.83724 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 9.98 36.01 0.36 -0.09 16 2 C -0.08 -0.50 5.85 -104.93 -0.61 -1.12 16 3 C -0.10 -0.69 9.58 -39.94 -0.38 -1.08 16 4 C -0.08 -0.70 9.99 -39.41 -0.39 -1.09 16 5 C 0.11 1.25 6.61 -84.85 -0.56 0.69 16 6 N -0.43 -5.55 6.24 -7.54 -0.05 -5.60 16 7 C 0.12 1.77 6.49 -82.95 -0.54 1.23 16 8 C 0.56 9.77 7.63 -12.13 -0.09 9.68 16 9 O -0.53 -10.94 15.82 5.37 0.08 -10.86 16 10 N -0.58 -9.93 2.97 -173.71 -0.52 -10.44 16 11 C 0.08 1.17 5.82 -3.70 -0.02 1.14 16 12 C -0.13 -1.81 6.08 -26.61 -0.16 -1.97 16 13 C -0.13 -2.13 5.35 -26.69 -0.14 -2.27 16 14 C 0.17 3.52 2.92 -67.81 -0.20 3.32 16 15 H 0.05 1.12 8.08 -51.93 -0.42 0.70 16 16 N -0.72 -18.31 5.12 -53.31 -0.27 -18.58 16 17 C -0.24 -6.84 9.93 -15.06 -0.15 -6.99 16 18 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 19 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 21 Si 0.91 23.00 29.55 -169.99 -5.02 17.98 16 22 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 23 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.09 1.79 6.03 -3.71 -0.02 1.77 16 26 C -0.12 -1.43 9.53 -39.44 -0.38 -1.81 16 27 C -0.06 -0.59 9.88 -39.26 -0.39 -0.97 16 28 C -0.08 -0.81 5.75 -106.72 -0.61 -1.43 16 29 C -0.10 -0.76 9.37 -39.52 -0.37 -1.13 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.22 8.07 -51.93 -0.42 -0.20 16 32 H 0.07 0.21 8.08 -51.93 -0.42 -0.20 16 33 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 34 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.13 1.67 4.21 -73.90 -0.31 1.36 16 37 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.39 10.30 7.80 -40.82 -0.32 9.98 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.09 2.08 7.00 -51.93 -0.36 1.71 16 44 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 45 H 0.15 1.69 7.69 -52.49 -0.40 1.29 16 46 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 47 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -33.56 382.67 -10.90 -44.46 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.85 Total: 7.54 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: -4.76 Total: -2.57 kcal Atomic # 7 Polarization: -62.21 SS G_CDS: -0.11 Total: -62.32 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.86 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.56 -10.90 -44.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999658640.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.697 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds