Wall clock time and date at job start Tue Mar 31 2020 22:32:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36356 * 119.96015 * 2 1 4 4 C 1.38867 * 121.05427 * 179.68043 * 3 2 1 5 5 C 1.38739 * 120.73132 * 0.62103 * 4 3 2 6 6 C 1.47428 * 120.33391 * 179.70415 * 5 4 3 7 7 O 1.21603 * 120.00033 * 132.29450 * 6 5 4 8 8 N 1.34776 * 120.00459 * 312.29501 * 6 5 4 9 9 C 1.46930 * 120.63660 * 174.36362 * 8 6 5 10 10 C 1.53192 * 108.77664 * 126.41305 * 9 8 6 11 11 C 1.53038 * 109.31079 * 54.63552 * 10 9 8 12 12 C 1.53045 * 109.54135 * 298.63577 * 11 10 9 13 13 H 1.09001 * 109.49685 * 301.38089 * 12 11 10 14 14 N 1.46503 * 109.49783 * 181.31836 * 12 11 10 15 15 C 1.36935 * 120.00048 * 155.00079 * 14 12 11 16 16 H 1.08007 * 119.99684 * 359.97438 * 15 14 12 17 17 C 1.38814 * 120.00262 * 180.02562 * 15 14 12 18 18 N 1.31622 * 119.99502 * 359.71716 * 17 15 14 19 19 Si 1.86798 * 119.99907 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47554 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47004 * 119.99720 * 19 17 15 22 22 H 1.48501 * 109.46668 * 239.99638 * 19 17 15 23 23 C 1.46931 * 120.62432 * 354.38669 * 8 6 5 24 24 C 1.41780 * 119.33338 * 359.43357 * 5 4 3 25 25 N 1.33349 * 121.05616 * 180.23009 * 24 5 4 26 26 C 1.31233 * 121.35060 * 179.97438 * 25 24 5 27 27 C 1.39238 * 121.69943 * 0.04646 * 26 25 24 28 28 C 1.36633 * 119.90173 * 359.97123 * 27 26 25 29 29 C 1.40442 * 119.96077 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47026 * 269.97867 * 1 2 3 31 31 H 1.09004 * 109.47206 * 29.97952 * 1 2 3 32 32 H 1.09002 * 109.46956 * 149.98083 * 1 2 3 33 33 H 1.08002 * 119.46629 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.63099 * 180.30586 * 4 3 2 35 35 H 1.08995 * 109.58002 * 6.62532 * 9 8 6 36 36 H 1.08997 * 109.70087 * 246.27158 * 9 8 6 37 37 H 1.09002 * 109.49556 * 294.68591 * 10 9 8 38 38 H 1.08996 * 109.49800 * 174.58770 * 10 9 8 39 39 H 1.09006 * 109.46016 * 178.61241 * 11 10 9 40 40 H 1.09003 * 109.44776 * 58.64813 * 11 10 9 41 41 H 0.96998 * 119.99954 * 334.99532 * 14 12 11 42 42 H 0.96995 * 119.99428 * 180.02562 * 18 17 15 43 43 H 1.09008 * 109.58692 * 113.80238 * 23 8 6 44 44 H 1.08997 * 109.58823 * 353.37564 * 23 8 6 45 45 H 1.08003 * 119.15396 * 180.02562 * 26 25 24 46 46 H 1.07996 * 120.04508 * 179.97438 * 27 26 25 47 47 H 1.08006 * 120.91614 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1879 1.1814 0.0000 4 6 3.5763 1.2079 0.0066 5 6 4.3080 0.0291 0.0005 6 6 5.7817 0.0675 0.0011 7 8 6.4078 -0.6292 0.7765 8 7 6.4352 0.8749 -0.8578 9 6 7.8959 1.0174 -0.7874 10 6 8.4872 0.7242 -2.1698 11 6 7.8169 1.6264 -3.2086 12 6 6.3162 1.3296 -3.2523 13 1 6.1600 0.2796 -3.4998 14 7 5.6806 2.1714 -4.2690 15 6 4.5109 1.7698 -4.8569 16 1 4.0571 0.8322 -4.5713 17 6 3.9089 2.5671 -5.8206 18 7 4.4597 3.7118 -6.1653 19 14 2.3129 2.0196 -6.6220 20 1 1.9007 0.7087 -6.0593 21 1 1.2548 3.0272 -6.3570 22 1 2.5148 1.8873 -8.0873 23 6 5.7003 1.6296 -1.8821 24 6 3.6241 -1.2128 -0.0004 25 7 4.2930 -2.3664 -0.0016 26 6 3.6659 -3.5193 -0.0020 27 6 2.2756 -3.5959 -0.0021 28 6 1.5303 -2.4507 -0.0012 29 6 2.2083 -1.2167 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6386 2.1112 -0.0004 34 1 4.0922 2.1567 0.0115 35 1 8.2972 0.3109 -0.0609 36 1 8.1519 2.0339 -0.4885 37 1 8.3106 -0.3202 -2.4270 38 1 9.5594 0.9197 -2.1559 39 1 8.2532 1.4372 -4.1895 40 1 7.9728 2.6705 -2.9371 41 1 6.0884 3.0132 -4.5257 42 1 4.0388 4.2691 -6.8385 43 1 5.7752 2.6969 -1.6736 44 1 4.6532 1.3270 -1.8779 45 1 4.2430 -4.4322 -0.0026 46 1 1.7872 -4.5591 -0.0029 47 1 0.4510 -2.4911 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999728490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:36 Heat of formation + Delta-G solvation = 33.787382 kcal Electronic energy + Delta-G solvation = -29943.136435 eV Core-core repulsion = 26090.833794 eV Total energy + Delta-G solvation = -3852.302641 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.12756 -39.59463 -37.29999 -37.12228 -34.27284 -34.21202 -32.40370 -31.41359 -30.94585 -30.62154 -28.27350 -27.56741 -25.06048 -24.27811 -24.04523 -23.62155 -22.21137 -21.31897 -20.13161 -18.95957 -18.33596 -17.17379 -17.15281 -16.99824 -16.13182 -15.35013 -15.12896 -14.76289 -14.58232 -14.37626 -14.20639 -13.91012 -13.87737 -13.62954 -13.44216 -13.35835 -13.29343 -12.99637 -12.56355 -12.43371 -12.29973 -12.22925 -11.96741 -11.47096 -11.35498 -11.21425 -11.02597 -10.87592 -10.59911 -10.48404 -10.43540 -10.23640 -9.96899 -9.71309 -9.69888 -9.27270 -9.09268 -8.80477 -8.29578 -8.09885 -7.03331 -5.83827 -3.13402 0.18111 0.79131 1.77592 2.75044 3.06949 3.37039 3.38425 3.44535 3.46013 4.09523 4.24266 4.39840 4.52820 4.63789 4.68596 4.72144 4.84437 4.95585 5.15350 5.17409 5.26073 5.27915 5.32239 5.39053 5.41703 5.45209 5.58142 5.64410 5.72105 5.75207 5.83269 5.87263 5.92412 5.93575 5.98570 6.11846 6.15516 6.18860 6.29013 6.35002 6.38323 6.39566 6.45492 6.74704 6.76225 6.84107 6.98554 7.64743 7.73130 7.96426 8.34266 8.50232 9.46328 10.01184 10.37128 11.38497 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008247 B = 0.005038 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3394.309391 B = 5556.578563 C = 7702.488706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.046 4.046 3 C -0.121 4.121 4 C -0.052 4.052 5 C -0.107 4.107 6 C 0.569 3.431 7 O -0.529 6.529 8 N -0.603 5.603 9 C 0.115 3.885 10 C -0.129 4.129 11 C -0.125 4.125 12 C 0.168 3.832 13 H 0.050 0.950 14 N -0.718 5.718 15 C -0.241 4.241 16 H 0.070 0.930 17 C -0.009 4.009 18 N -0.930 5.930 19 Si 0.903 3.097 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.082 3.918 24 C 0.166 3.834 25 N -0.455 5.455 26 C 0.132 3.868 27 C -0.180 4.180 28 C -0.057 4.057 29 C -0.105 4.105 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.386 0.614 42 H 0.255 0.745 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.158 0.842 46 H 0.137 0.863 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.129 -8.298 14.260 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.047 4.047 3 C -0.139 4.139 4 C -0.072 4.072 5 C -0.110 4.110 6 C 0.357 3.643 7 O -0.406 6.406 8 N -0.337 5.337 9 C -0.008 4.008 10 C -0.168 4.168 11 C -0.164 4.164 12 C 0.057 3.943 13 H 0.068 0.932 14 N -0.359 5.359 15 C -0.372 4.372 16 H 0.088 0.912 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.734 3.266 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C -0.043 4.043 24 C 0.043 3.957 25 N -0.162 5.162 26 C -0.041 4.041 27 C -0.200 4.200 28 C -0.083 4.083 29 C -0.108 4.108 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.220 0.780 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.175 0.825 46 H 0.154 0.846 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.003 -8.601 14.582 17.194 hybrid contribution -1.774 0.084 -0.781 1.940 sum -4.777 -8.517 13.802 16.907 Atomic orbital electron populations 1.20905 0.90463 1.03649 1.02673 1.19836 0.96272 0.91930 0.96627 1.20729 0.93779 0.98142 1.01218 1.21438 0.94154 0.97476 0.94120 1.19703 0.93786 0.92069 1.05468 1.17903 0.86502 0.79207 0.80738 1.90740 1.68132 1.41173 1.40576 1.48151 1.07518 1.45112 1.32922 1.21546 0.79568 1.01564 0.98083 1.21872 0.99427 1.00740 0.94738 1.21821 0.96471 0.99266 0.98805 1.20485 0.90443 0.95665 0.87754 0.93177 1.42388 1.26702 1.23433 1.43380 1.19271 0.98854 1.03216 1.15835 0.91240 1.24718 0.99144 0.96897 0.99768 1.69667 1.40557 1.12566 1.35037 0.86181 0.83510 0.77705 0.79238 1.20543 1.21760 1.21782 1.23049 0.97355 0.95237 0.88684 1.18475 0.88999 0.91611 0.96604 1.68090 1.39554 0.97562 1.10965 1.23044 0.92000 0.96074 0.92991 1.21887 0.95569 0.99493 1.03006 1.21487 1.00424 0.91284 0.95106 1.18610 0.93641 0.94365 1.04142 0.90566 0.90520 0.91085 0.84679 0.84401 0.89403 0.91735 0.91638 0.91093 0.91484 0.92045 0.78020 0.93487 0.91747 0.89614 0.82465 0.84562 0.84222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.03 9.53 36.00 0.34 -0.69 16 2 C -0.05 -0.56 5.89 -104.47 -0.62 -1.18 16 3 C -0.12 -1.53 9.57 -40.03 -0.38 -1.91 16 4 C -0.05 -0.75 7.49 -39.16 -0.29 -1.04 16 5 C -0.11 -1.83 4.89 -104.62 -0.51 -2.34 16 6 C 0.57 10.52 6.97 -12.52 -0.09 10.43 16 7 O -0.53 -11.05 15.90 5.28 0.08 -10.97 16 8 N -0.60 -10.19 2.97 -174.03 -0.52 -10.71 16 9 C 0.11 1.68 6.44 -3.71 -0.02 1.66 16 10 C -0.13 -1.82 6.08 -26.61 -0.16 -1.99 16 11 C -0.13 -2.06 5.35 -26.69 -0.14 -2.20 16 12 C 0.17 3.32 2.92 -67.81 -0.20 3.12 16 13 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 14 N -0.72 -17.32 5.12 -53.30 -0.27 -17.60 16 15 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 16 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -27.19 13.06 55.49 0.72 -26.47 16 19 Si 0.90 21.90 29.55 -169.99 -5.02 16.87 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 C 0.08 1.46 4.79 -3.71 -0.02 1.44 16 24 C 0.17 2.81 6.59 -84.58 -0.56 2.25 16 25 N -0.45 -7.80 9.35 -10.76 -0.10 -7.90 16 26 C 0.13 1.69 11.15 -17.44 -0.19 1.49 16 27 C -0.18 -1.86 10.03 -39.79 -0.40 -2.26 16 28 C -0.06 -0.63 9.35 -39.19 -0.37 -0.99 16 29 C -0.11 -1.47 5.74 -106.83 -0.61 -2.09 16 30 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.08 0.61 8.08 -51.93 -0.42 0.19 16 32 H 0.07 0.54 6.42 -51.93 -0.33 0.21 16 33 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.14 1.82 7.24 -52.49 -0.38 1.44 16 35 H 0.09 1.33 6.99 -51.93 -0.36 0.97 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.39 9.82 7.80 -40.82 -0.32 9.50 16 42 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 44 H 0.09 1.63 5.11 -51.93 -0.27 1.36 16 45 H 0.16 1.52 8.06 -52.48 -0.42 1.10 16 46 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.14 1.08 6.42 -52.48 -0.34 0.74 16 LS Contribution 378.95 15.07 5.71 5.71 Total: -1.00 -34.00 378.95 -10.47 -44.47 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.61 Total: 9.84 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -4.47 Total: -3.26 kcal Atomic # 7 Polarization: -62.50 SS G_CDS: -0.17 Total: -62.67 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.08 Total: -10.97 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.00 -10.47 -44.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999728490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.259 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds