Wall clock time and date at job start Tue Mar 31 2020 22:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36356 * 119.96015 * 2 1 4 4 C 1.38867 * 121.05427 * 179.68043 * 3 2 1 5 5 C 1.38739 * 120.73132 * 0.62103 * 4 3 2 6 6 C 1.47428 * 120.33391 * 179.70415 * 5 4 3 7 7 O 1.21603 * 120.00033 * 132.29450 * 6 5 4 8 8 N 1.34776 * 120.00459 * 312.29501 * 6 5 4 9 9 C 1.46930 * 120.63660 * 174.36362 * 8 6 5 10 10 C 1.53192 * 108.77664 * 126.41305 * 9 8 6 11 11 C 1.53038 * 109.31079 * 54.63552 * 10 9 8 12 12 C 1.53045 * 109.54135 * 298.63577 * 11 10 9 13 13 H 1.09001 * 109.49685 * 301.38089 * 12 11 10 14 14 N 1.46503 * 109.49783 * 181.31836 * 12 11 10 15 15 C 1.36935 * 120.00048 * 155.00079 * 14 12 11 16 16 H 1.08007 * 119.99684 * 359.97438 * 15 14 12 17 17 C 1.38814 * 120.00262 * 180.02562 * 15 14 12 18 18 N 1.31622 * 119.99502 * 359.71716 * 17 15 14 19 19 Si 1.86798 * 119.99907 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47554 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47004 * 119.99720 * 19 17 15 22 22 H 1.48501 * 109.46668 * 239.99638 * 19 17 15 23 23 C 1.46931 * 120.62432 * 354.38669 * 8 6 5 24 24 C 1.41780 * 119.33338 * 359.43357 * 5 4 3 25 25 N 1.33349 * 121.05616 * 180.23009 * 24 5 4 26 26 C 1.31233 * 121.35060 * 179.97438 * 25 24 5 27 27 C 1.39238 * 121.69943 * 0.04646 * 26 25 24 28 28 C 1.36633 * 119.90173 * 359.97123 * 27 26 25 29 29 C 1.40442 * 119.96077 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47026 * 269.97867 * 1 2 3 31 31 H 1.09004 * 109.47206 * 29.97952 * 1 2 3 32 32 H 1.09002 * 109.46956 * 149.98083 * 1 2 3 33 33 H 1.08002 * 119.46629 * 359.97438 * 3 2 1 34 34 H 1.08002 * 119.63099 * 180.30586 * 4 3 2 35 35 H 1.08995 * 109.58002 * 6.62532 * 9 8 6 36 36 H 1.08997 * 109.70087 * 246.27158 * 9 8 6 37 37 H 1.09002 * 109.49556 * 294.68591 * 10 9 8 38 38 H 1.08996 * 109.49800 * 174.58770 * 10 9 8 39 39 H 1.09006 * 109.46016 * 178.61241 * 11 10 9 40 40 H 1.09003 * 109.44776 * 58.64813 * 11 10 9 41 41 H 0.96998 * 119.99954 * 334.99532 * 14 12 11 42 42 H 0.96995 * 119.99428 * 180.02562 * 18 17 15 43 43 H 1.09008 * 109.58692 * 113.80238 * 23 8 6 44 44 H 1.08997 * 109.58823 * 353.37564 * 23 8 6 45 45 H 1.08003 * 119.15396 * 180.02562 * 26 25 24 46 46 H 1.07996 * 120.04508 * 179.97438 * 27 26 25 47 47 H 1.08006 * 120.91614 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1879 1.1814 0.0000 4 6 3.5763 1.2079 0.0066 5 6 4.3080 0.0291 0.0005 6 6 5.7817 0.0675 0.0011 7 8 6.4078 -0.6292 0.7765 8 7 6.4352 0.8749 -0.8578 9 6 7.8959 1.0174 -0.7874 10 6 8.4872 0.7242 -2.1698 11 6 7.8169 1.6264 -3.2086 12 6 6.3162 1.3296 -3.2523 13 1 6.1600 0.2796 -3.4998 14 7 5.6806 2.1714 -4.2690 15 6 4.5109 1.7698 -4.8569 16 1 4.0571 0.8322 -4.5713 17 6 3.9089 2.5671 -5.8206 18 7 4.4597 3.7118 -6.1653 19 14 2.3129 2.0196 -6.6220 20 1 1.9007 0.7087 -6.0593 21 1 1.2548 3.0272 -6.3570 22 1 2.5148 1.8873 -8.0873 23 6 5.7003 1.6296 -1.8821 24 6 3.6241 -1.2128 -0.0004 25 7 4.2930 -2.3664 -0.0016 26 6 3.6659 -3.5193 -0.0020 27 6 2.2756 -3.5959 -0.0021 28 6 1.5303 -2.4507 -0.0012 29 6 2.2083 -1.2167 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6386 2.1112 -0.0004 34 1 4.0922 2.1567 0.0115 35 1 8.2972 0.3109 -0.0609 36 1 8.1519 2.0339 -0.4885 37 1 8.3106 -0.3202 -2.4270 38 1 9.5594 0.9197 -2.1559 39 1 8.2532 1.4372 -4.1895 40 1 7.9728 2.6705 -2.9371 41 1 6.0884 3.0132 -4.5257 42 1 4.0388 4.2691 -6.8385 43 1 5.7752 2.6969 -1.6736 44 1 4.6532 1.3270 -1.8779 45 1 4.2430 -4.4322 -0.0026 46 1 1.7872 -4.5591 -0.0029 47 1 0.4510 -2.4911 -0.0009 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999728490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:35 Heat of formation + Delta-G solvation = 12.822092 kcal Electronic energy + Delta-G solvation = -29944.045558 eV Core-core repulsion = 26090.833794 eV Total energy + Delta-G solvation = -3853.211764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.18657 -40.89136 -38.66608 -38.23889 -36.03949 -35.26933 -33.85078 -33.03402 -32.00047 -31.60614 -29.95321 -28.57984 -26.35750 -25.87835 -25.24950 -24.69095 -23.48928 -22.68349 -21.50134 -20.23220 -19.31597 -19.12592 -18.31442 -18.09066 -17.42999 -16.77703 -16.47307 -16.17508 -15.69716 -15.60728 -15.44961 -15.35961 -15.30942 -14.90197 -14.76847 -14.38277 -14.19577 -14.05860 -13.98079 -13.82093 -13.63706 -13.16332 -13.09041 -12.91754 -12.81987 -12.54836 -12.39554 -12.21682 -12.15087 -12.01224 -11.92029 -11.62752 -11.46132 -11.40483 -11.17193 -10.93610 -10.33809 -9.82147 -9.76244 -9.16044 -8.97979 -7.96298 -5.25694 -0.80861 -0.19629 0.76861 1.45126 1.46501 1.55821 1.61550 1.85309 2.12836 2.54177 3.06395 3.26340 3.33481 3.37175 3.68324 3.71079 3.82773 3.87435 3.90743 3.93288 4.01343 4.05743 4.17663 4.32724 4.34352 4.39176 4.40843 4.50599 4.57847 4.69390 4.73384 4.80597 4.83047 4.85366 4.90806 4.95136 4.98845 5.05701 5.06323 5.16057 5.17806 5.32788 5.41008 5.41282 5.46944 5.54187 5.60341 5.82249 6.24018 6.33696 6.97390 7.12227 7.32926 8.03142 8.30934 9.26510 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008247 B = 0.005038 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3394.309391 B = 5556.578563 C = 7702.488706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.035 4.035 3 C -0.140 4.140 4 C -0.049 4.049 5 C -0.152 4.152 6 C 0.567 3.433 7 O -0.564 6.564 8 N -0.602 5.602 9 C 0.110 3.890 10 C -0.118 4.118 11 C -0.117 4.117 12 C 0.166 3.834 13 H 0.023 0.977 14 N -0.726 5.726 15 C -0.240 4.240 16 H 0.063 0.937 17 C -0.063 4.063 18 N -0.962 5.962 19 Si 0.963 3.037 20 H -0.272 1.272 21 H -0.287 1.287 22 H -0.294 1.294 23 C 0.100 3.900 24 C 0.137 3.863 25 N -0.512 5.512 26 C 0.124 3.876 27 C -0.174 4.174 28 C -0.052 4.052 29 C -0.128 4.128 30 H 0.098 0.902 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.161 0.839 34 H 0.142 0.858 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.379 0.621 42 H 0.253 0.747 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.180 0.820 46 H 0.180 0.820 47 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.328 -9.097 14.797 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.036 4.036 3 C -0.157 4.157 4 C -0.069 4.069 5 C -0.156 4.156 6 C 0.356 3.644 7 O -0.444 6.444 8 N -0.334 5.334 9 C -0.012 4.012 10 C -0.156 4.156 11 C -0.155 4.155 12 C 0.057 3.943 13 H 0.041 0.959 14 N -0.366 5.366 15 C -0.372 4.372 16 H 0.081 0.919 17 C -0.256 4.256 18 N -0.612 5.612 19 Si 0.792 3.208 20 H -0.197 1.197 21 H -0.213 1.213 22 H -0.221 1.221 23 C -0.025 4.025 24 C 0.015 3.985 25 N -0.221 5.221 26 C -0.047 4.047 27 C -0.193 4.193 28 C -0.078 4.078 29 C -0.130 4.130 30 H 0.117 0.883 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.179 0.821 34 H 0.159 0.841 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.124 0.876 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.212 0.788 42 H 0.062 0.938 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.197 0.803 46 H 0.198 0.802 47 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -5.189 -9.420 15.143 18.573 hybrid contribution -1.101 0.204 -0.900 1.436 sum -6.290 -9.215 14.243 18.092 Atomic orbital electron populations 1.21035 0.87296 1.04832 1.04395 1.20352 0.98416 0.91080 0.93730 1.21062 0.93061 0.99715 1.01890 1.21597 0.95288 0.96810 0.93201 1.19772 0.93054 0.93507 1.09217 1.18242 0.87414 0.78510 0.80212 1.90689 1.69111 1.42549 1.42014 1.48173 1.08412 1.44627 1.32226 1.21754 0.78256 1.02863 0.98311 1.21811 1.01221 0.99187 0.93394 1.21732 0.93845 1.00508 0.99427 1.20594 0.92715 0.93432 0.87606 0.95867 1.42461 1.26236 1.23552 1.44368 1.19463 0.99504 1.02696 1.15490 0.91861 1.25412 1.02231 0.97189 1.00729 1.69796 1.41982 1.13630 1.35819 0.85233 0.80083 0.77589 0.77859 1.19712 1.21322 1.22108 1.22651 0.96555 0.95571 0.87748 1.18760 0.90632 0.91493 0.97639 1.68038 1.41438 0.98856 1.13720 1.23650 0.93915 0.95709 0.91463 1.22309 0.94369 1.01368 1.01243 1.21992 1.02321 0.90107 0.93373 1.18961 0.92742 0.96481 1.04788 0.88321 0.89669 0.89582 0.82120 0.84059 0.89867 0.89326 0.93158 0.87558 0.92014 0.90781 0.78846 0.93849 0.90863 0.90927 0.80300 0.80233 0.80296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 9.53 71.23 0.68 -0.93 16 2 C -0.03 -0.80 5.89 -19.77 -0.12 -0.91 16 3 C -0.14 -3.44 9.57 21.98 0.21 -3.23 16 4 C -0.05 -1.46 7.49 22.54 0.17 -1.29 16 5 C -0.15 -5.47 4.89 -19.86 -0.10 -5.57 16 6 C 0.57 22.11 6.97 86.66 0.60 22.71 16 7 O -0.56 -24.91 15.90 -4.04 -0.06 -24.98 16 8 N -0.60 -20.93 2.97 -822.77 -2.45 -23.38 16 9 C 0.11 3.19 6.44 86.36 0.56 3.75 16 10 C -0.12 -3.24 6.08 30.67 0.19 -3.05 16 11 C -0.12 -3.80 5.35 30.62 0.16 -3.64 16 12 C 0.17 6.75 2.92 45.07 0.13 6.88 16 13 H 0.02 1.06 8.08 -2.39 -0.02 1.04 16 14 N -0.73 -35.67 5.12 -322.55 -1.65 -37.32 16 15 C -0.24 -13.10 9.93 84.03 0.83 -12.26 16 16 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 17 C -0.06 -3.49 5.50 84.86 0.47 -3.03 16 18 N -0.96 -56.77 13.06 21.65 0.28 -56.49 16 19 Si 0.96 45.03 29.55 68.60 2.03 47.06 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 23 C 0.10 3.66 4.79 86.36 0.41 4.07 16 24 C 0.14 4.80 6.59 40.61 0.27 5.07 16 25 N -0.51 -18.26 9.35 -187.96 -1.76 -20.02 16 26 C 0.12 3.13 11.15 85.02 0.95 4.08 16 27 C -0.17 -3.12 10.03 22.13 0.22 -2.90 16 28 C -0.05 -1.00 9.35 22.52 0.21 -0.79 16 29 C -0.13 -3.45 5.74 -21.29 -0.12 -3.57 16 30 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 32 H 0.09 0.92 6.42 -2.39 -0.02 0.90 16 33 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 34 H 0.14 3.88 7.24 -2.91 -0.02 3.86 16 35 H 0.08 2.54 6.99 -2.39 -0.02 2.53 16 36 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 40 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.38 19.59 7.80 -92.71 -0.72 18.86 16 42 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16 43 H 0.07 2.55 8.14 -2.38 -0.02 2.53 16 44 H 0.07 2.87 5.11 -2.39 -0.01 2.86 16 45 H 0.18 3.35 8.06 -2.91 -0.02 3.32 16 46 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 47 H 0.18 1.89 6.42 -2.91 -0.02 1.87 16 Total: -1.00 -77.65 378.95 2.39 -75.25 By element: Atomic # 1 Polarization: 34.22 SS G_CDS: 0.28 Total: 34.49 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 5.73 Total: 5.38 kcal Atomic # 7 Polarization: -131.63 SS G_CDS: -5.57 Total: -137.21 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -0.06 Total: -24.98 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -77.65 2.39 -75.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999728490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.076 kcal (2) G-P(sol) polarization free energy of solvation -77.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds