Wall clock time and date at job start Tue Mar 31 2020 22:26:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39323 * 119.05962 * 2 1 4 4 C 1.38851 * 119.57490 * 180.32428 * 3 2 1 5 5 C 1.47910 * 121.11074 * 179.64363 * 4 3 2 6 6 O 1.21540 * 120.00120 * 224.48273 * 5 4 3 7 7 N 1.34770 * 119.99882 * 44.47538 * 5 4 3 8 8 C 1.46501 * 120.00224 * 5.52509 * 7 5 4 9 9 C 1.46505 * 120.00330 * 185.52145 * 7 5 4 10 10 C 1.53776 * 113.69462 * 198.93293 * 9 7 5 11 11 C 1.53788 * 87.08019 * 89.12606 * 10 9 7 12 12 N 1.46497 * 113.61243 * 270.88289 * 11 10 9 13 13 C 1.36937 * 119.99798 * 257.88484 * 12 11 10 14 14 H 1.07998 * 120.00551 * 7.82324 * 13 12 11 15 15 C 1.38823 * 119.99828 * 187.82157 * 13 12 11 16 16 N 1.31608 * 119.99879 * 177.15644 * 15 13 12 17 17 Si 1.86802 * 119.99802 * 357.15251 * 15 13 12 18 18 H 1.48504 * 109.47012 * 94.18298 * 17 15 13 19 19 H 1.48500 * 109.46996 * 214.18068 * 17 15 13 20 20 H 1.48496 * 109.47041 * 334.18203 * 17 15 13 21 21 C 1.53782 * 87.08190 * 25.43367 * 11 10 9 22 22 C 1.41827 * 117.78014 * 359.36957 * 4 3 2 23 23 C 1.40096 * 121.36965 * 180.24950 * 22 4 3 24 24 C 1.36246 * 119.64514 * 179.97438 * 23 22 4 25 25 C 1.39355 * 120.83153 * 0.03841 * 24 23 22 26 26 C 1.36065 * 121.05126 * 359.97438 * 25 24 23 27 27 C 1.40704 * 119.74036 * 359.97438 * 26 25 24 28 28 N 1.30965 * 119.06101 * 179.62833 * 2 1 3 29 29 H 1.09000 * 109.47254 * 270.36549 * 1 2 3 30 30 H 1.09000 * 109.46862 * 30.36677 * 1 2 3 31 31 H 1.09002 * 109.47211 * 150.36704 * 1 2 3 32 32 H 1.08001 * 120.20608 * 359.96637 * 3 2 1 33 33 H 1.09004 * 109.47484 * 264.64459 * 8 7 5 34 34 H 1.09001 * 109.47329 * 24.64994 * 8 7 5 35 35 H 1.08998 * 109.47444 * 144.64530 * 8 7 5 36 36 H 1.09000 * 112.84845 * 67.65950 * 9 7 5 37 37 H 1.08997 * 113.61271 * 203.67362 * 10 9 7 38 38 H 1.08997 * 113.61684 * 334.58043 * 10 9 7 39 39 H 1.09003 * 113.68818 * 139.99313 * 11 10 9 40 40 H 0.96998 * 119.99781 * 77.88952 * 12 11 10 41 41 H 0.97003 * 120.00278 * 180.02562 * 16 15 13 42 42 H 1.08995 * 113.61520 * 220.02085 * 21 11 10 43 43 H 1.09000 * 113.61578 * 89.10881 * 21 11 10 44 44 H 1.08002 * 120.17718 * 0.03446 * 23 22 4 45 45 H 1.07998 * 119.58442 * 180.02562 * 24 23 22 46 46 H 1.07995 * 119.47062 * 180.02562 * 25 24 23 47 47 H 1.08001 * 120.12795 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2178 0.0000 4 6 3.5721 1.2303 -0.0068 5 6 4.3249 2.5035 -0.0149 6 8 5.2770 2.6419 -0.7576 7 7 3.9550 3.5102 0.8011 8 6 2.8857 3.3037 1.7811 9 6 4.6221 4.8113 0.7084 10 6 4.4397 5.6897 1.9573 11 6 5.7064 5.0205 2.5165 12 7 5.4372 3.7968 3.2756 13 6 5.4561 3.8222 4.6446 14 1 5.5434 4.7639 5.1661 15 6 5.3630 2.6375 5.3622 16 7 5.4374 2.6564 6.6760 17 14 5.1320 1.0166 4.4629 18 1 6.4558 0.3825 4.2376 19 1 4.2833 0.1133 5.2808 20 1 4.4734 1.2654 3.1554 21 6 6.1190 4.7623 1.0577 22 6 4.2445 -0.0184 0.0002 23 6 5.6434 -0.0935 -0.0007 24 6 6.2529 -1.3120 0.0067 25 6 5.5022 -2.4860 0.0145 26 6 4.1421 -2.4494 0.0154 27 6 3.4772 -1.2093 0.0089 28 7 2.1431 -1.1447 0.0074 29 1 -0.3634 0.0066 1.0276 30 1 -0.3633 0.8867 -0.5195 31 1 -0.3634 -0.8933 -0.5081 32 1 1.6318 2.1462 -0.0005 33 1 1.9393 3.6482 1.3643 34 1 2.8125 2.2429 2.0208 35 1 3.1098 3.8662 2.6874 36 1 4.4086 5.3308 -0.2258 37 1 4.5587 6.7555 1.7626 38 1 3.5379 5.4601 2.5247 39 1 6.3690 5.7078 3.0426 40 1 5.2456 2.9686 2.8085 41 1 5.3728 1.8285 7.1775 42 1 6.5726 3.7840 0.8989 43 1 6.6969 5.5747 0.6171 44 1 6.2356 0.8097 -0.0064 45 1 7.3314 -1.3688 0.0064 46 1 6.0081 -3.4402 0.0207 47 1 3.5750 -3.3685 0.0218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999789199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:41 Heat of formation + Delta-G solvation = 77.204575 kcal Electronic energy + Delta-G solvation = -30733.326049 eV Core-core repulsion = 26882.906119 eV Total energy + Delta-G solvation = -3850.419930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.32731 -40.09221 -37.93921 -37.45813 -34.64182 -33.63807 -32.93108 -32.13248 -30.63651 -30.07359 -27.92544 -27.20534 -25.45667 -24.99081 -23.90797 -23.34134 -22.60500 -21.96439 -19.79504 -18.44781 -18.21641 -17.77121 -17.47230 -16.85388 -16.22348 -15.70715 -15.47998 -14.91781 -14.78299 -14.69069 -14.44554 -14.01770 -13.95009 -13.72869 -13.39334 -13.20930 -13.16624 -12.83375 -12.73040 -12.44059 -12.33351 -12.14460 -11.74620 -11.61660 -11.59270 -11.44164 -11.38928 -11.02497 -10.95722 -10.50948 -10.36668 -10.25702 -10.19085 -9.79579 -9.67024 -9.36387 -8.97587 -8.76029 -8.44485 -8.28002 -7.34980 -5.88420 -3.24624 0.10987 0.70222 1.71013 2.64768 2.81125 3.07233 3.25460 3.31745 3.39171 3.99726 4.01596 4.22516 4.47889 4.51869 4.60480 4.74954 4.83391 4.99501 4.99942 5.06316 5.16301 5.20501 5.24378 5.31360 5.33293 5.40163 5.41996 5.54098 5.60101 5.65052 5.68063 5.69175 5.76978 5.96667 5.97470 6.01968 6.07879 6.09400 6.25256 6.34274 6.39046 6.42898 6.45534 6.54621 6.68550 6.76135 6.86528 7.40501 7.78606 7.93201 8.12900 8.32466 9.11230 9.83387 10.04149 11.29302 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009874 B = 0.005342 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.167526 B = 5240.634998 C = 5977.857025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.154 3.846 3 C -0.141 4.141 4 C -0.054 4.054 5 C 0.559 3.441 6 O -0.525 6.525 7 N -0.577 5.577 8 C 0.057 3.943 9 C 0.125 3.875 10 C -0.180 4.180 11 C 0.169 3.831 12 N -0.729 5.729 13 C -0.248 4.248 14 H 0.093 0.907 15 C 0.012 3.988 16 N -0.927 5.927 17 Si 0.875 3.125 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.278 1.278 21 C -0.162 4.162 22 C -0.073 4.073 23 C -0.086 4.086 24 C -0.118 4.118 25 C -0.096 4.096 26 C -0.100 4.100 27 C 0.133 3.867 28 N -0.465 5.465 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.145 0.855 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.363 0.637 41 H 0.260 0.740 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.141 0.859 45 H 0.130 0.870 46 H 0.131 0.869 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.254 -3.516 -15.602 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.001 3.999 3 C -0.161 4.161 4 C -0.065 4.065 5 C 0.346 3.654 6 O -0.402 6.402 7 N -0.309 5.309 8 C -0.085 4.085 9 C 0.022 3.978 10 C -0.221 4.221 11 C 0.057 3.943 12 N -0.371 5.371 13 C -0.378 4.378 14 H 0.111 0.889 15 C -0.184 4.184 16 N -0.574 5.574 17 Si 0.706 3.294 18 H -0.210 1.210 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.201 4.201 22 C -0.075 4.075 23 C -0.104 4.104 24 C -0.136 4.136 25 C -0.116 4.116 26 C -0.118 4.118 27 C 0.011 3.989 28 N -0.175 5.175 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.163 0.837 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.125 0.875 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.198 0.802 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.108 0.892 44 H 0.159 0.841 45 H 0.148 0.852 46 H 0.149 0.851 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.089 -4.216 -15.684 17.721 hybrid contribution 0.203 -0.478 -0.450 0.687 sum -6.886 -4.694 -16.135 18.160 Atomic orbital electron populations 1.20784 0.88082 1.03724 1.03619 1.21399 0.97271 0.87626 0.93581 1.22289 0.93301 0.99998 1.00562 1.20390 0.94086 0.93413 0.98581 1.18062 0.83704 0.82792 0.80842 1.90756 1.26988 1.81529 1.40967 1.47405 1.36774 1.11360 1.35323 1.22331 0.88606 1.03516 0.94032 1.21899 0.94420 0.82916 0.98574 1.24199 1.03465 0.98365 0.96075 1.21127 0.93444 0.89563 0.90128 1.42657 1.84377 1.06244 1.03794 1.19081 1.43405 0.94981 0.80320 0.88935 1.24659 1.01724 0.96851 0.95170 1.69688 1.56375 1.26716 1.04609 0.86723 0.78219 0.85609 0.78895 1.21002 1.21590 1.20474 1.23728 0.95048 1.02885 0.98466 1.18606 0.95007 0.92270 1.01663 1.21276 0.92996 0.99459 0.96702 1.21019 1.00672 0.92119 0.99830 1.20957 0.93727 0.98775 0.98099 1.20762 0.94210 0.96021 1.00838 1.18773 0.88801 0.92786 0.98533 1.67607 1.08682 1.28801 1.12402 0.89804 0.90381 0.90147 0.83696 0.92776 0.91063 0.87473 0.90526 0.89461 0.90057 0.91069 0.80224 0.92943 0.90773 0.89226 0.84143 0.85174 0.85060 0.84518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.93 10.14 36.00 0.36 -0.56 16 2 C 0.15 2.02 6.78 -82.56 -0.56 1.46 16 3 C -0.14 -1.91 7.50 -38.95 -0.29 -2.21 16 4 C -0.05 -0.89 4.88 -104.34 -0.51 -1.40 16 5 C 0.56 9.76 6.60 -12.30 -0.08 9.68 16 6 O -0.53 -10.11 13.91 5.33 0.07 -10.03 16 7 N -0.58 -9.34 2.10 -174.09 -0.37 -9.70 16 8 C 0.06 0.87 7.45 59.85 0.45 1.32 16 9 C 0.12 1.90 4.17 -67.11 -0.28 1.62 16 10 C -0.18 -2.69 7.16 -25.92 -0.19 -2.88 16 11 C 0.17 3.12 4.55 -67.12 -0.31 2.82 16 12 N -0.73 -16.52 3.63 -52.63 -0.19 -16.72 16 13 C -0.25 -6.69 10.46 -15.06 -0.16 -6.85 16 14 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 15 C 0.01 0.36 5.50 -17.43 -0.10 0.26 16 16 N -0.93 -28.43 13.97 55.49 0.78 -27.66 16 17 Si 0.87 22.26 27.87 -169.99 -4.74 17.52 16 18 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 19 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 20 H -0.28 -6.66 5.73 56.52 0.32 -6.34 16 21 C -0.16 -2.67 7.09 -25.91 -0.18 -2.85 16 22 C -0.07 -1.25 5.76 -106.52 -0.61 -1.87 16 23 C -0.09 -1.43 9.19 -39.60 -0.36 -1.80 16 24 C -0.12 -1.64 9.96 -39.88 -0.40 -2.03 16 25 C -0.10 -1.17 9.94 -39.95 -0.40 -1.57 16 26 C -0.10 -1.35 9.98 -39.43 -0.39 -1.74 16 27 C 0.13 2.13 6.61 -84.87 -0.56 1.57 16 28 N -0.47 -7.07 10.19 -7.25 -0.07 -7.14 16 29 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 0.52 8.07 -51.93 -0.42 0.10 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.15 1.56 6.60 -52.49 -0.35 1.21 16 33 H 0.05 0.62 7.42 -51.93 -0.39 0.24 16 34 H 0.07 1.17 5.44 -51.93 -0.28 0.89 16 35 H 0.11 1.84 4.72 -51.93 -0.25 1.60 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.08 1.28 5.77 -51.93 -0.30 0.98 16 39 H 0.07 1.33 8.13 -51.93 -0.42 0.91 16 40 H 0.36 8.37 4.01 -40.82 -0.16 8.20 16 41 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 42 H 0.07 1.41 7.03 -51.93 -0.37 1.05 16 43 H 0.09 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.14 2.49 6.15 -52.49 -0.32 2.17 16 45 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 46 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 47 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -33.37 369.92 -9.78 -43.15 By element: Atomic # 1 Polarization: 18.29 SS G_CDS: -6.27 Total: 12.02 kcal Atomic # 6 Polarization: -2.45 SS G_CDS: -4.57 Total: -7.02 kcal Atomic # 7 Polarization: -61.36 SS G_CDS: 0.14 Total: -61.22 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.07 Total: -10.03 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.74 Total: 17.52 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.37 -9.78 -43.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999789199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.350 kcal (2) G-P(sol) polarization free energy of solvation -33.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds