Wall clock time and date at job start Tue Mar 31 2020 22:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39323 * 119.05962 * 2 1 4 4 C 1.38851 * 119.57490 * 180.32428 * 3 2 1 5 5 C 1.47910 * 121.11074 * 179.64363 * 4 3 2 6 6 O 1.21540 * 120.00120 * 224.48273 * 5 4 3 7 7 N 1.34770 * 119.99882 * 44.47538 * 5 4 3 8 8 C 1.46501 * 120.00224 * 5.52509 * 7 5 4 9 9 C 1.46505 * 120.00330 * 185.52145 * 7 5 4 10 10 C 1.53776 * 113.69462 * 198.93293 * 9 7 5 11 11 C 1.53788 * 87.08019 * 89.12606 * 10 9 7 12 12 N 1.46497 * 113.61243 * 270.88289 * 11 10 9 13 13 C 1.36937 * 119.99798 * 257.88484 * 12 11 10 14 14 H 1.07998 * 120.00551 * 7.82324 * 13 12 11 15 15 C 1.38823 * 119.99828 * 187.82157 * 13 12 11 16 16 N 1.31608 * 119.99879 * 177.15644 * 15 13 12 17 17 Si 1.86802 * 119.99802 * 357.15251 * 15 13 12 18 18 H 1.48504 * 109.47012 * 94.18298 * 17 15 13 19 19 H 1.48500 * 109.46996 * 214.18068 * 17 15 13 20 20 H 1.48496 * 109.47041 * 334.18203 * 17 15 13 21 21 C 1.53782 * 87.08190 * 25.43367 * 11 10 9 22 22 C 1.41827 * 117.78014 * 359.36957 * 4 3 2 23 23 C 1.40096 * 121.36965 * 180.24950 * 22 4 3 24 24 C 1.36246 * 119.64514 * 179.97438 * 23 22 4 25 25 C 1.39355 * 120.83153 * 0.03841 * 24 23 22 26 26 C 1.36065 * 121.05126 * 359.97438 * 25 24 23 27 27 C 1.40704 * 119.74036 * 359.97438 * 26 25 24 28 28 N 1.30965 * 119.06101 * 179.62833 * 2 1 3 29 29 H 1.09000 * 109.47254 * 270.36549 * 1 2 3 30 30 H 1.09000 * 109.46862 * 30.36677 * 1 2 3 31 31 H 1.09002 * 109.47211 * 150.36704 * 1 2 3 32 32 H 1.08001 * 120.20608 * 359.96637 * 3 2 1 33 33 H 1.09004 * 109.47484 * 264.64459 * 8 7 5 34 34 H 1.09001 * 109.47329 * 24.64994 * 8 7 5 35 35 H 1.08998 * 109.47444 * 144.64530 * 8 7 5 36 36 H 1.09000 * 112.84845 * 67.65950 * 9 7 5 37 37 H 1.08997 * 113.61271 * 203.67362 * 10 9 7 38 38 H 1.08997 * 113.61684 * 334.58043 * 10 9 7 39 39 H 1.09003 * 113.68818 * 139.99313 * 11 10 9 40 40 H 0.96998 * 119.99781 * 77.88952 * 12 11 10 41 41 H 0.97003 * 120.00278 * 180.02562 * 16 15 13 42 42 H 1.08995 * 113.61520 * 220.02085 * 21 11 10 43 43 H 1.09000 * 113.61578 * 89.10881 * 21 11 10 44 44 H 1.08002 * 120.17718 * 0.03446 * 23 22 4 45 45 H 1.07998 * 119.58442 * 180.02562 * 24 23 22 46 46 H 1.07995 * 119.47062 * 180.02562 * 25 24 23 47 47 H 1.08001 * 120.12795 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1837 1.2178 0.0000 4 6 3.5721 1.2303 -0.0068 5 6 4.3249 2.5035 -0.0149 6 8 5.2770 2.6419 -0.7576 7 7 3.9550 3.5102 0.8011 8 6 2.8857 3.3037 1.7811 9 6 4.6221 4.8113 0.7084 10 6 4.4397 5.6897 1.9573 11 6 5.7064 5.0205 2.5165 12 7 5.4372 3.7968 3.2756 13 6 5.4561 3.8222 4.6446 14 1 5.5434 4.7639 5.1661 15 6 5.3630 2.6375 5.3622 16 7 5.4374 2.6564 6.6760 17 14 5.1320 1.0166 4.4629 18 1 6.4558 0.3825 4.2376 19 1 4.2833 0.1133 5.2808 20 1 4.4734 1.2654 3.1554 21 6 6.1190 4.7623 1.0577 22 6 4.2445 -0.0184 0.0002 23 6 5.6434 -0.0935 -0.0007 24 6 6.2529 -1.3120 0.0067 25 6 5.5022 -2.4860 0.0145 26 6 4.1421 -2.4494 0.0154 27 6 3.4772 -1.2093 0.0089 28 7 2.1431 -1.1447 0.0074 29 1 -0.3634 0.0066 1.0276 30 1 -0.3633 0.8867 -0.5195 31 1 -0.3634 -0.8933 -0.5081 32 1 1.6318 2.1462 -0.0005 33 1 1.9393 3.6482 1.3643 34 1 2.8125 2.2429 2.0208 35 1 3.1098 3.8662 2.6874 36 1 4.4086 5.3308 -0.2258 37 1 4.5587 6.7555 1.7626 38 1 3.5379 5.4601 2.5247 39 1 6.3690 5.7078 3.0426 40 1 5.2456 2.9686 2.8085 41 1 5.3728 1.8285 7.1775 42 1 6.5726 3.7840 0.8989 43 1 6.6969 5.5747 0.6171 44 1 6.2356 0.8097 -0.0064 45 1 7.3314 -1.3688 0.0064 46 1 6.0081 -3.4402 0.0207 47 1 3.5750 -3.3685 0.0218 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999789199.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:40 Heat of formation + Delta-G solvation = 57.421459 kcal Electronic energy + Delta-G solvation = -30734.183910 eV Core-core repulsion = 26882.906119 eV Total energy + Delta-G solvation = -3851.277790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.46385 -41.32503 -39.29381 -38.47882 -36.04784 -35.30822 -34.26911 -33.06701 -32.59545 -31.17096 -28.82488 -28.45231 -26.90287 -26.22232 -25.41074 -24.64503 -23.65876 -23.36813 -21.12363 -20.09428 -19.40412 -19.17765 -18.67185 -18.04941 -17.51567 -17.05330 -16.62350 -16.56103 -16.08709 -15.83169 -15.73292 -15.43466 -15.20983 -14.89003 -14.80676 -14.57567 -14.26614 -14.01892 -14.00142 -13.73082 -13.65630 -13.32405 -13.10485 -12.95493 -12.84640 -12.65202 -12.59756 -12.44517 -12.37815 -12.09588 -11.94186 -11.73939 -11.66731 -11.48797 -11.10767 -10.97550 -10.52997 -9.79250 -9.70730 -9.37771 -9.30882 -8.10744 -5.41333 -0.98236 -0.35025 0.58024 1.19314 1.25511 1.28651 1.42990 1.71291 1.91532 2.34207 2.91846 3.03794 3.10813 3.19834 3.48285 3.52150 3.53333 3.62070 3.73329 3.76895 3.97924 4.05376 4.12857 4.17782 4.25624 4.28401 4.31097 4.37717 4.51261 4.61551 4.77033 4.78200 4.80670 4.83200 4.86500 4.90899 4.95475 5.00252 5.03894 5.10145 5.23896 5.25972 5.31734 5.34046 5.42830 5.56137 5.74873 5.78984 6.14183 6.17487 6.73010 6.86504 7.01888 7.80400 7.98598 9.10660 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009874 B = 0.005342 C = 0.004683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2835.167526 B = 5240.634998 C = 5977.857025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.148 3.852 3 C -0.128 4.128 4 C -0.085 4.085 5 C 0.557 3.443 6 O -0.553 6.553 7 N -0.578 5.578 8 C 0.058 3.942 9 C 0.126 3.874 10 C -0.156 4.156 11 C 0.143 3.857 12 N -0.734 5.734 13 C -0.218 4.218 14 H 0.070 0.930 15 C -0.046 4.046 16 N -0.973 5.973 17 Si 0.931 3.069 18 H -0.294 1.294 19 H -0.295 1.295 20 H -0.263 1.263 21 C -0.155 4.155 22 C -0.099 4.099 23 C -0.122 4.122 24 C -0.116 4.116 25 C -0.092 4.092 26 C -0.104 4.104 27 C 0.109 3.891 28 N -0.478 5.478 29 H 0.095 0.905 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.175 0.825 33 H 0.098 0.902 34 H 0.055 0.945 35 H 0.087 0.913 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.362 0.638 41 H 0.257 0.743 42 H 0.043 0.957 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.151 0.849 46 H 0.172 0.828 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.140 -3.476 -17.580 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.005 4.005 3 C -0.148 4.148 4 C -0.096 4.096 5 C 0.345 3.655 6 O -0.433 6.433 7 N -0.309 5.309 8 C -0.083 4.083 9 C 0.023 3.977 10 C -0.196 4.196 11 C 0.034 3.966 12 N -0.376 5.376 13 C -0.349 4.349 14 H 0.088 0.912 15 C -0.239 4.239 16 N -0.624 5.624 17 Si 0.762 3.238 18 H -0.222 1.222 19 H -0.222 1.222 20 H -0.188 1.188 21 C -0.194 4.194 22 C -0.101 4.101 23 C -0.140 4.140 24 C -0.133 4.133 25 C -0.111 4.111 26 C -0.123 4.123 27 C -0.012 4.012 28 N -0.188 5.188 29 H 0.113 0.887 30 H 0.124 0.876 31 H 0.103 0.897 32 H 0.192 0.808 33 H 0.116 0.884 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.119 0.881 37 H 0.141 0.859 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.196 0.804 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.138 0.862 44 H 0.135 0.865 45 H 0.169 0.831 46 H 0.189 0.811 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -8.988 -4.134 -17.715 20.291 hybrid contribution 0.823 -0.392 0.126 0.920 sum -8.166 -4.526 -17.590 19.914 Atomic orbital electron populations 1.20928 0.84798 1.05378 1.04743 1.22148 0.99304 0.86982 0.92062 1.22655 0.92275 1.01495 0.98410 1.20488 0.95393 0.92815 1.00916 1.18266 0.83408 0.83257 0.80602 1.90724 1.28194 1.82052 1.42311 1.47518 1.36946 1.11483 1.34988 1.22359 0.90188 1.02374 0.93420 1.22025 0.93123 0.82754 0.99789 1.24024 1.00683 1.00025 0.94843 1.21499 0.95971 0.88309 0.90845 1.42640 1.84724 1.07874 1.02335 1.19064 1.39910 0.93691 0.82205 0.91225 1.25187 1.03392 0.99611 0.95667 1.69815 1.59400 1.27141 1.06063 0.85797 0.77430 0.82184 0.78422 1.22183 1.22158 1.18826 1.23718 0.96532 1.02327 0.96836 1.18852 0.95363 0.93213 1.02712 1.21254 0.93251 0.99795 0.99735 1.21387 1.02019 0.91816 0.98108 1.21365 0.93423 0.99733 0.96577 1.21148 0.94972 0.96057 1.00082 1.19156 0.89404 0.93328 0.99328 1.67704 1.08303 1.29806 1.13015 0.88706 0.87621 0.89653 0.80801 0.88422 0.92587 0.89482 0.88050 0.85854 0.90426 0.91601 0.80375 0.93376 0.93827 0.86232 0.86457 0.83083 0.81097 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.46 10.14 71.24 0.72 -0.74 16 2 C 0.15 3.59 6.78 42.95 0.29 3.88 16 3 C -0.13 -3.24 7.50 22.68 0.17 -3.07 16 4 C -0.09 -2.79 4.88 -19.68 -0.10 -2.89 16 5 C 0.56 19.28 6.60 86.81 0.57 19.85 16 6 O -0.55 -21.68 13.91 -3.84 -0.05 -21.73 16 7 N -0.58 -17.80 2.10 -822.97 -1.73 -19.53 16 8 C 0.06 1.65 7.45 127.77 0.95 2.61 16 9 C 0.13 3.52 4.17 45.52 0.19 3.71 16 10 C -0.16 -4.20 7.16 31.12 0.22 -3.98 16 11 C 0.14 5.13 4.55 45.52 0.21 5.34 16 12 N -0.73 -33.28 3.63 -320.43 -1.16 -34.44 16 13 C -0.22 -11.92 10.46 84.04 0.88 -11.05 16 14 H 0.07 4.10 8.06 -2.91 -0.02 4.08 16 15 C -0.05 -2.69 5.50 84.87 0.47 -2.23 16 16 N -0.97 -61.43 13.97 21.65 0.30 -61.13 16 17 Si 0.93 47.47 27.87 68.60 1.91 49.39 16 18 H -0.29 -15.39 7.11 99.48 0.71 -14.68 16 19 H -0.29 -15.15 7.11 99.48 0.71 -14.45 16 20 H -0.26 -12.51 5.73 99.48 0.57 -11.94 16 21 C -0.15 -4.90 7.09 31.12 0.22 -4.68 16 22 C -0.10 -3.44 5.76 -21.09 -0.12 -3.56 16 23 C -0.12 -4.19 9.19 22.26 0.20 -3.99 16 24 C -0.12 -3.15 9.96 22.07 0.22 -2.93 16 25 C -0.09 -2.08 9.94 22.03 0.22 -1.86 16 26 C -0.10 -2.67 9.98 22.37 0.22 -2.45 16 27 C 0.11 3.44 6.61 40.33 0.27 3.71 16 28 N -0.48 -13.92 10.19 -176.84 -1.80 -15.72 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.11 0.94 8.07 -2.39 -0.02 0.92 16 31 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.17 3.14 6.60 -2.91 -0.02 3.12 16 33 H 0.10 1.88 7.42 -2.38 -0.02 1.86 16 34 H 0.06 1.76 5.44 -2.39 -0.01 1.75 16 35 H 0.09 2.85 4.72 -2.39 -0.01 2.84 16 36 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.08 2.22 5.77 -2.39 -0.01 2.21 16 39 H 0.07 2.41 8.13 -2.39 -0.02 2.40 16 40 H 0.36 16.73 4.01 -92.71 -0.37 16.36 16 41 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 42 H 0.04 1.67 7.03 -2.39 -0.02 1.65 16 43 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 44 H 0.12 4.47 6.15 -2.91 -0.02 4.45 16 45 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 46 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 47 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -76.75 369.92 3.78 -72.98 By element: Atomic # 1 Polarization: 33.99 SS G_CDS: 0.50 Total: 34.50 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 5.81 Total: -4.31 kcal Atomic # 7 Polarization: -126.43 SS G_CDS: -4.39 Total: -130.82 kcal Atomic # 8 Polarization: -21.68 SS G_CDS: -0.05 Total: -21.73 kcal Atomic # 14 Polarization: 47.47 SS G_CDS: 1.91 Total: 49.39 kcal Total: -76.75 3.78 -72.98 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999789199.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.398 kcal (2) G-P(sol) polarization free energy of solvation -76.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds