Wall clock time and date at job start Tue Mar 31 2020 22:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39321 * 119.11305 * 2 1 4 4 C 1.36578 * 119.90105 * 180.02562 * 3 2 1 5 5 C 1.40892 * 118.16443 * 0.02562 * 4 3 2 6 6 C 1.40170 * 121.23043 * 179.97438 * 5 4 3 7 7 C 1.38551 * 119.40547 * 180.02562 * 6 5 4 8 8 C 1.47765 * 119.80510 * 179.97438 * 7 6 5 9 9 O 1.21562 * 119.99997 * 50.80189 * 8 7 6 10 10 N 1.34773 * 120.00301 * 230.79785 * 8 7 6 11 11 C 1.46923 * 120.63451 * 175.88689 * 10 8 7 12 12 C 1.53199 * 108.89656 * 233.68276 * 11 10 8 13 13 C 1.53046 * 109.30926 * 305.29340 * 12 11 10 14 14 C 1.53038 * 109.53913 * 61.36429 * 13 12 11 15 15 H 1.09004 * 109.49780 * 58.58389 * 14 13 12 16 16 N 1.46500 * 109.50078 * 178.65189 * 14 13 12 17 17 C 1.36934 * 120.00124 * 205.00130 * 16 14 13 18 18 H 1.08002 * 120.00291 * 359.97438 * 17 16 14 19 19 C 1.38815 * 120.00100 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99728 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00185 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47035 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47097 * 120.00161 * 21 19 17 24 24 H 1.48500 * 109.47099 * 239.99933 * 21 19 17 25 25 C 1.47209 * 120.81273 * 356.03625 * 10 8 7 26 26 C 1.40633 * 120.39326 * 0.27680 * 7 6 5 27 27 C 1.35705 * 120.91316 * 359.40991 * 26 7 6 28 28 C 1.40759 * 120.11409 * 0.60512 * 27 26 7 29 29 N 1.31119 * 119.11715 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46927 * 270.01829 * 1 2 3 31 31 H 1.09008 * 109.47260 * 30.01628 * 1 2 3 32 32 H 1.09001 * 109.47460 * 150.02265 * 1 2 3 33 33 H 1.08001 * 120.04791 * 0.02562 * 3 2 1 34 34 H 1.07998 * 120.92064 * 179.97438 * 4 3 2 35 35 H 1.08007 * 120.30177 * 0.02562 * 6 5 4 36 36 H 1.08999 * 109.59176 * 113.82519 * 11 10 8 37 37 H 1.09003 * 109.58743 * 353.53591 * 11 10 8 38 38 H 1.09002 * 109.49654 * 65.23843 * 12 11 10 39 39 H 1.08997 * 109.50133 * 185.31101 * 12 11 10 40 40 H 1.09000 * 109.45727 * 181.38050 * 13 12 11 41 41 H 1.09001 * 109.45939 * 301.34053 * 13 12 11 42 42 H 0.97000 * 119.99913 * 24.99205 * 16 14 13 43 43 H 0.96996 * 120.00242 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.53543 * 6.52659 * 25 10 8 45 45 H 1.09009 * 109.56009 * 246.15432 * 25 10 8 46 46 H 1.07994 * 119.54212 * 179.72142 * 26 7 6 47 47 H 1.08007 * 119.93974 * 180.28690 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2172 0.0000 4 6 3.5505 1.2360 -0.0005 5 6 4.2325 0.0031 -0.0016 6 6 5.6331 -0.0526 -0.0027 7 6 6.2649 -1.2857 -0.0043 8 6 7.7409 -1.3547 -0.0061 9 8 8.3801 -0.7190 0.8094 10 7 8.3786 -2.1224 -0.9118 11 6 9.8460 -2.1320 -0.9847 12 6 10.2734 -1.8210 -2.4226 13 6 9.5932 -2.8055 -3.3768 14 6 8.0743 -2.6463 -3.2792 15 1 7.7992 -1.6210 -3.5266 16 7 7.4249 -3.5664 -4.2163 17 6 6.1726 -3.2863 -4.6940 18 1 5.6633 -2.3872 -4.3797 19 6 5.5575 -4.1579 -5.5823 20 7 6.1780 -5.2538 -5.9649 21 14 3.8489 -3.7761 -6.2335 22 1 3.3733 -2.4944 -5.6538 23 1 3.8972 -3.6618 -7.7132 24 1 2.9181 -4.8683 -5.8515 25 6 7.6220 -2.9665 -1.8511 26 6 5.5097 -2.4720 -0.0107 27 6 4.1532 -2.4350 -0.0034 28 6 3.4804 -1.1986 -0.0021 29 7 2.1450 -1.1455 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8899 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6312 2.1445 0.0004 34 1 4.0927 2.1700 -0.0010 35 1 6.2147 0.8575 -0.0024 36 1 10.2198 -3.1145 -0.6968 37 1 10.2502 -1.3756 -0.3118 38 1 9.9776 -0.8035 -2.6781 39 1 11.3555 -1.9181 -2.5096 40 1 9.9147 -2.6020 -4.3982 41 1 9.8698 -3.8243 -3.1053 42 1 7.8822 -4.3741 -4.4984 43 1 5.7484 -5.8627 -6.5859 44 1 6.5566 -2.7596 -1.7501 45 1 7.8144 -4.0173 -1.6338 46 1 6.0163 -3.4257 -0.0164 47 1 3.5888 -3.3559 -0.0037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000516138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:34 Heat of formation + Delta-G solvation = 31.038707 kcal Electronic energy + Delta-G solvation = -29391.731589 eV Core-core repulsion = 25539.309756 eV Total energy + Delta-G solvation = -3852.421832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.05839 -39.95423 -37.55128 -36.90489 -34.33574 -33.63864 -32.83490 -31.90287 -31.19925 -30.18149 -28.48545 -27.98443 -25.38597 -24.16151 -23.84528 -23.21058 -22.18370 -21.64187 -20.54976 -19.26413 -18.32885 -17.38216 -17.13777 -16.53989 -16.15901 -15.56337 -15.17297 -14.78527 -14.64152 -14.53847 -14.34128 -14.03293 -13.85498 -13.71278 -13.44480 -13.19947 -13.15780 -13.10968 -12.65052 -12.54100 -12.39662 -12.29495 -12.16117 -11.54291 -11.41799 -11.26233 -11.04443 -10.89667 -10.70568 -10.61471 -10.55921 -10.27527 -10.03214 -9.74612 -9.71716 -9.56343 -9.14154 -8.69149 -8.45487 -8.25421 -7.07035 -5.85612 -3.15799 0.23565 0.65159 1.88858 2.47283 2.92726 3.25187 3.38782 3.46050 3.47119 4.00398 4.06808 4.41239 4.47825 4.56036 4.57906 4.68978 4.94293 5.00145 5.06482 5.16030 5.18067 5.24065 5.25766 5.35966 5.38986 5.40467 5.56919 5.65458 5.68799 5.74517 5.78439 5.79698 5.86878 5.93561 5.94397 6.02735 6.07432 6.17868 6.25212 6.28328 6.29411 6.31137 6.43625 6.65035 6.70429 6.73689 6.87851 7.54824 7.64365 7.85607 8.23760 8.32481 9.44612 9.98154 10.33566 11.36490 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007579 B = 0.004880 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3693.633645 B = 5736.014585 C = 8766.718517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.161 3.839 3 C -0.178 4.178 4 C -0.046 4.046 5 C -0.113 4.113 6 C -0.042 4.042 7 C -0.117 4.117 8 C 0.561 3.439 9 O -0.549 6.549 10 N -0.597 5.597 11 C 0.112 3.888 12 C -0.129 4.129 13 C -0.127 4.127 14 C 0.168 3.832 15 H 0.051 0.949 16 N -0.718 5.718 17 C -0.244 4.244 18 H 0.070 0.930 19 C -0.007 4.007 20 N -0.929 5.929 21 Si 0.902 3.098 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.075 3.925 26 C -0.069 4.069 27 C -0.093 4.093 28 C 0.149 3.851 29 N -0.476 5.476 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.136 0.864 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.386 0.614 43 H 0.256 0.744 44 H 0.093 0.907 45 H 0.068 0.932 46 H 0.138 0.862 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.399 10.663 12.963 16.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.008 3.992 3 C -0.198 4.198 4 C -0.072 4.072 5 C -0.115 4.115 6 C -0.061 4.061 7 C -0.120 4.120 8 C 0.349 3.651 9 O -0.428 6.428 10 N -0.329 5.329 11 C -0.010 4.010 12 C -0.168 4.168 13 C -0.165 4.165 14 C 0.057 3.943 15 H 0.069 0.931 16 N -0.358 5.358 17 C -0.375 4.375 18 H 0.088 0.912 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.733 3.267 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.217 1.217 25 C -0.050 4.050 26 C -0.089 4.089 27 C -0.112 4.112 28 C 0.027 3.973 29 N -0.185 5.185 30 H 0.098 0.902 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.154 0.846 36 H 0.085 0.915 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.080 0.920 42 H 0.220 0.780 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.086 0.914 46 H 0.156 0.844 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.604 10.181 13.301 16.951 hybrid contribution -0.367 0.534 -0.678 0.938 sum -2.971 10.715 12.622 16.821 Atomic orbital electron populations 1.20794 0.88644 1.03820 1.03190 1.21534 0.97196 0.88239 0.92238 1.21683 0.94971 0.99233 1.03927 1.21500 0.94488 0.97176 0.94035 1.18712 0.94236 0.94299 1.04277 1.21182 0.92414 0.97181 0.95367 1.19842 0.93381 0.94303 1.04510 1.18287 0.87046 0.78969 0.80814 1.90747 1.67699 1.45610 1.38768 1.48281 1.07135 1.43482 1.34042 1.21604 0.79500 1.02306 0.97633 1.21883 1.00150 1.00296 0.94441 1.21838 0.96290 0.98970 0.99418 1.20471 0.90687 0.95032 0.88107 0.93112 1.42385 1.17777 1.25136 1.50532 1.19250 0.92394 1.04964 1.20850 0.91182 1.24717 0.98559 0.97005 1.00053 1.69662 1.37923 1.12818 1.37297 0.86189 0.84371 0.77576 0.78545 1.20509 1.21771 1.21665 1.23308 0.97196 0.93710 0.90750 1.20982 0.93756 0.97782 0.96358 1.20681 0.93683 0.96708 1.00106 1.18922 0.89023 0.92890 0.96456 1.67887 1.08418 1.28738 1.13493 0.90167 0.90500 0.90133 0.84500 0.84170 0.84588 0.91500 0.89393 0.91683 0.90917 0.91363 0.91962 0.77983 0.93432 0.88936 0.91387 0.84408 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.14 36.01 0.37 -0.53 16 2 C 0.16 1.93 6.78 -82.49 -0.56 1.37 16 3 C -0.18 -1.82 9.64 -39.78 -0.38 -2.21 16 4 C -0.05 -0.51 9.89 -39.18 -0.39 -0.90 16 5 C -0.11 -1.59 5.74 -106.82 -0.61 -2.20 16 6 C -0.04 -0.59 9.48 -38.74 -0.37 -0.96 16 7 C -0.12 -1.80 5.02 -104.98 -0.53 -2.33 16 8 C 0.56 9.18 7.21 -12.37 -0.09 9.09 16 9 O -0.55 -10.13 16.46 5.31 0.09 -10.04 16 10 N -0.60 -9.19 2.98 -173.68 -0.52 -9.71 16 11 C 0.11 1.50 6.41 -3.71 -0.02 1.47 16 12 C -0.13 -1.65 6.08 -26.60 -0.16 -1.81 16 13 C -0.13 -1.96 5.35 -26.69 -0.14 -2.10 16 14 C 0.17 3.15 2.92 -67.81 -0.20 2.95 16 15 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 16 N -0.72 -16.88 5.12 -53.31 -0.27 -17.15 16 17 C -0.24 -6.47 9.93 -15.06 -0.15 -6.62 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.93 -27.08 13.06 55.49 0.72 -26.36 16 21 Si 0.90 22.09 29.55 -169.99 -5.02 17.07 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 24 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 25 C 0.08 1.26 4.94 -3.56 -0.02 1.24 16 26 C -0.07 -1.01 7.24 -39.58 -0.29 -1.29 16 27 C -0.09 -1.39 9.95 -39.54 -0.39 -1.78 16 28 C 0.15 2.29 6.61 -84.78 -0.56 1.73 16 29 N -0.48 -7.13 10.23 -7.16 -0.07 -7.20 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.47 8.07 -51.92 -0.42 0.06 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.14 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 1.19 7.03 -51.93 -0.36 0.83 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.39 9.65 7.80 -40.82 -0.32 9.33 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.09 1.65 4.54 -51.93 -0.24 1.42 16 45 H 0.07 1.14 8.14 -51.92 -0.42 0.71 16 46 H 0.14 1.86 7.02 -52.49 -0.37 1.50 16 47 H 0.14 1.93 8.06 -52.48 -0.42 1.51 16 LS Contribution 383.62 15.07 5.78 5.78 Total: -1.00 -32.36 383.62 -10.63 -42.99 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -6.75 Total: 9.77 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -4.59 Total: -5.15 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: -0.14 Total: -60.42 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.04 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.36 -10.63 -42.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000516138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.032 kcal (2) G-P(sol) polarization free energy of solvation -32.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds