Wall clock time and date at job start Tue Mar 31 2020 22:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39321 * 119.11305 * 2 1 4 4 C 1.36578 * 119.90105 * 180.02562 * 3 2 1 5 5 C 1.40892 * 118.16443 * 0.02562 * 4 3 2 6 6 C 1.40170 * 121.23043 * 179.97438 * 5 4 3 7 7 C 1.38551 * 119.40547 * 180.02562 * 6 5 4 8 8 C 1.47765 * 119.80510 * 179.97438 * 7 6 5 9 9 O 1.21562 * 119.99997 * 50.80189 * 8 7 6 10 10 N 1.34773 * 120.00301 * 230.79785 * 8 7 6 11 11 C 1.46923 * 120.63451 * 175.88689 * 10 8 7 12 12 C 1.53199 * 108.89656 * 233.68276 * 11 10 8 13 13 C 1.53046 * 109.30926 * 305.29340 * 12 11 10 14 14 C 1.53038 * 109.53913 * 61.36429 * 13 12 11 15 15 H 1.09004 * 109.49780 * 58.58389 * 14 13 12 16 16 N 1.46500 * 109.50078 * 178.65189 * 14 13 12 17 17 C 1.36934 * 120.00124 * 205.00130 * 16 14 13 18 18 H 1.08002 * 120.00291 * 359.97438 * 17 16 14 19 19 C 1.38815 * 120.00100 * 179.97438 * 17 16 14 20 20 N 1.31622 * 119.99728 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00185 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47035 * 0.02562 * 21 19 17 23 23 H 1.48498 * 109.47097 * 120.00161 * 21 19 17 24 24 H 1.48500 * 109.47099 * 239.99933 * 21 19 17 25 25 C 1.47209 * 120.81273 * 356.03625 * 10 8 7 26 26 C 1.40633 * 120.39326 * 0.27680 * 7 6 5 27 27 C 1.35705 * 120.91316 * 359.40991 * 26 7 6 28 28 C 1.40759 * 120.11409 * 0.60512 * 27 26 7 29 29 N 1.31119 * 119.11715 * 179.97438 * 2 1 3 30 30 H 1.09003 * 109.46927 * 270.01829 * 1 2 3 31 31 H 1.09008 * 109.47260 * 30.01628 * 1 2 3 32 32 H 1.09001 * 109.47460 * 150.02265 * 1 2 3 33 33 H 1.08001 * 120.04791 * 0.02562 * 3 2 1 34 34 H 1.07998 * 120.92064 * 179.97438 * 4 3 2 35 35 H 1.08007 * 120.30177 * 0.02562 * 6 5 4 36 36 H 1.08999 * 109.59176 * 113.82519 * 11 10 8 37 37 H 1.09003 * 109.58743 * 353.53591 * 11 10 8 38 38 H 1.09002 * 109.49654 * 65.23843 * 12 11 10 39 39 H 1.08997 * 109.50133 * 185.31101 * 12 11 10 40 40 H 1.09000 * 109.45727 * 181.38050 * 13 12 11 41 41 H 1.09001 * 109.45939 * 301.34053 * 13 12 11 42 42 H 0.97000 * 119.99913 * 24.99205 * 16 14 13 43 43 H 0.96996 * 120.00242 * 180.02562 * 20 19 17 44 44 H 1.08995 * 109.53543 * 6.52659 * 25 10 8 45 45 H 1.09009 * 109.56009 * 246.15432 * 25 10 8 46 46 H 1.07994 * 119.54212 * 179.72142 * 26 7 6 47 47 H 1.08007 * 119.93974 * 180.28690 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1848 1.2172 0.0000 4 6 3.5505 1.2360 -0.0005 5 6 4.2325 0.0031 -0.0016 6 6 5.6331 -0.0526 -0.0027 7 6 6.2649 -1.2857 -0.0043 8 6 7.7409 -1.3547 -0.0061 9 8 8.3801 -0.7190 0.8094 10 7 8.3786 -2.1224 -0.9118 11 6 9.8460 -2.1320 -0.9847 12 6 10.2734 -1.8210 -2.4226 13 6 9.5932 -2.8055 -3.3768 14 6 8.0743 -2.6463 -3.2792 15 1 7.7992 -1.6210 -3.5266 16 7 7.4249 -3.5664 -4.2163 17 6 6.1726 -3.2863 -4.6940 18 1 5.6633 -2.3872 -4.3797 19 6 5.5575 -4.1579 -5.5823 20 7 6.1780 -5.2538 -5.9649 21 14 3.8489 -3.7761 -6.2335 22 1 3.3733 -2.4944 -5.6538 23 1 3.8972 -3.6618 -7.7132 24 1 2.9181 -4.8683 -5.8515 25 6 7.6220 -2.9665 -1.8511 26 6 5.5097 -2.4720 -0.0107 27 6 4.1532 -2.4350 -0.0034 28 6 3.4804 -1.1986 -0.0021 29 7 2.1450 -1.1455 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8899 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6312 2.1445 0.0004 34 1 4.0927 2.1700 -0.0010 35 1 6.2147 0.8575 -0.0024 36 1 10.2198 -3.1145 -0.6968 37 1 10.2502 -1.3756 -0.3118 38 1 9.9776 -0.8035 -2.6781 39 1 11.3555 -1.9181 -2.5096 40 1 9.9147 -2.6020 -4.3982 41 1 9.8698 -3.8243 -3.1053 42 1 7.8822 -4.3741 -4.4984 43 1 5.7484 -5.8627 -6.5859 44 1 6.5566 -2.7596 -1.7501 45 1 7.8144 -4.0173 -1.6338 46 1 6.0163 -3.4257 -0.0164 47 1 3.5888 -3.3559 -0.0037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000516138.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:33 Heat of formation + Delta-G solvation = 12.073415 kcal Electronic energy + Delta-G solvation = -29392.553985 eV Core-core repulsion = 25539.309756 eV Total energy + Delta-G solvation = -3853.244229 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.11450 -41.14424 -38.85878 -38.04130 -36.06460 -34.61181 -34.06841 -33.32855 -32.54656 -31.21062 -29.99696 -29.06602 -26.61846 -25.91313 -24.90264 -24.35528 -23.19747 -22.93768 -21.90631 -20.50208 -19.41715 -19.12639 -18.48236 -17.66566 -17.26432 -16.78959 -16.64531 -16.12461 -15.75245 -15.67426 -15.50664 -15.44066 -15.30802 -15.05455 -14.75158 -14.43282 -14.08353 -14.01845 -13.98296 -13.78929 -13.58341 -13.19980 -13.13152 -13.03162 -12.93119 -12.59227 -12.45875 -12.34036 -12.16462 -11.99778 -11.91284 -11.66508 -11.59033 -11.43804 -11.19074 -10.91474 -10.53052 -9.84159 -9.69303 -9.34243 -9.00241 -7.97458 -5.25726 -0.77095 -0.36088 0.86831 1.33737 1.42942 1.45113 1.52930 1.75675 2.06778 2.52523 2.98215 3.13470 3.28339 3.36965 3.51235 3.64610 3.79968 3.85987 3.90549 3.96323 3.99444 4.03706 4.16955 4.24622 4.35855 4.36555 4.38754 4.59954 4.62506 4.70171 4.76714 4.78898 4.84047 4.85956 4.90063 4.91802 4.96416 4.99060 5.09604 5.16059 5.17791 5.20313 5.35803 5.43504 5.44208 5.49425 5.54577 5.73910 6.21932 6.28436 6.89958 6.96785 7.32826 8.04491 8.29686 9.25509 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.007579 B = 0.004880 C = 0.003193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3693.633645 B = 5736.014585 C = 8766.718517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.154 3.846 3 C -0.171 4.171 4 C -0.048 4.048 5 C -0.131 4.131 6 C -0.037 4.037 7 C -0.142 4.142 8 C 0.564 3.436 9 O -0.571 6.571 10 N -0.594 5.594 11 C 0.107 3.893 12 C -0.117 4.117 13 C -0.120 4.120 14 C 0.166 3.834 15 H 0.035 0.965 16 N -0.727 5.727 17 C -0.235 4.235 18 H 0.067 0.933 19 C -0.062 4.062 20 N -0.962 5.962 21 Si 0.957 3.043 22 H -0.274 1.274 23 H -0.291 1.291 24 H -0.293 1.293 25 C 0.091 3.909 26 C -0.072 4.072 27 C -0.110 4.110 28 C 0.127 3.873 29 N -0.514 5.514 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.068 0.932 33 H 0.180 0.820 34 H 0.174 0.826 35 H 0.152 0.848 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.059 0.941 39 H 0.105 0.895 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.378 0.622 43 H 0.252 0.748 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.141 0.859 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.828 12.977 13.646 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.002 3.998 3 C -0.191 4.191 4 C -0.073 4.073 5 C -0.133 4.133 6 C -0.056 4.056 7 C -0.145 4.145 8 C 0.353 3.647 9 O -0.453 6.453 10 N -0.326 5.326 11 C -0.014 4.014 12 C -0.156 4.156 13 C -0.158 4.158 14 C 0.056 3.944 15 H 0.053 0.947 16 N -0.367 5.367 17 C -0.367 4.367 18 H 0.085 0.915 19 C -0.255 4.255 20 N -0.612 5.612 21 Si 0.787 3.213 22 H -0.199 1.199 23 H -0.218 1.218 24 H -0.220 1.220 25 C -0.034 4.034 26 C -0.092 4.092 27 C -0.128 4.128 28 C 0.006 3.994 29 N -0.225 5.225 30 H 0.115 0.885 31 H 0.124 0.876 32 H 0.087 0.913 33 H 0.197 0.803 34 H 0.191 0.809 35 H 0.169 0.831 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.080 0.920 41 H 0.087 0.913 42 H 0.210 0.790 43 H 0.061 0.939 44 H 0.099 0.901 45 H 0.089 0.911 46 H 0.159 0.841 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -3.014 12.528 14.010 19.035 hybrid contribution -0.310 -0.062 -0.825 0.884 sum -3.323 12.467 13.185 18.447 Atomic orbital electron populations 1.20926 0.86193 1.04680 1.04491 1.22311 0.98989 0.88283 0.90235 1.22151 0.94858 1.00159 1.01885 1.21941 0.95193 0.97217 0.92953 1.18950 0.94198 0.95251 1.04897 1.21414 0.92835 0.97292 0.94074 1.19871 0.92935 0.95069 1.06633 1.18396 0.87398 0.78478 0.80449 1.90725 1.68304 1.46602 1.39629 1.48261 1.08025 1.42930 1.33338 1.21818 0.78062 1.03443 0.98093 1.21825 1.01778 0.98958 0.93000 1.21754 0.93732 1.00290 1.00010 1.20630 0.92761 0.93028 0.87962 0.94708 1.42494 1.17086 1.25566 1.51537 1.19469 0.93314 1.04209 1.19681 0.91495 1.25345 1.01636 0.97350 1.01203 1.69779 1.39197 1.13813 1.38433 0.85314 0.80915 0.77296 0.77731 1.19925 1.21843 1.21998 1.22894 0.96748 0.93958 0.89826 1.20986 0.93758 0.97878 0.96567 1.20798 0.93897 0.97171 1.00957 1.19150 0.89749 0.93484 0.97052 1.67918 1.08315 1.30651 1.15612 0.88481 0.87609 0.91275 0.80271 0.80858 0.83084 0.89785 0.89131 0.92196 0.87640 0.91957 0.91263 0.78951 0.93930 0.90073 0.91134 0.84144 0.83947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 10.14 71.24 0.72 -0.78 16 2 C 0.15 3.40 6.78 42.93 0.29 3.70 16 3 C -0.17 -2.94 9.64 22.14 0.21 -2.72 16 4 C -0.05 -0.94 9.89 22.53 0.22 -0.72 16 5 C -0.13 -3.58 5.74 -21.29 -0.12 -3.70 16 6 C -0.04 -1.03 9.48 22.81 0.22 -0.81 16 7 C -0.14 -4.42 5.02 -20.10 -0.10 -4.52 16 8 C 0.56 18.35 7.21 86.76 0.63 18.98 16 9 O -0.57 -20.80 16.46 -3.91 -0.06 -20.86 16 10 N -0.59 -17.92 2.98 -821.67 -2.45 -20.37 16 11 C 0.11 2.66 6.41 86.37 0.55 3.22 16 12 C -0.12 -2.73 6.08 30.68 0.19 -2.54 16 13 C -0.12 -3.55 5.35 30.62 0.16 -3.38 16 14 C 0.17 6.20 2.92 45.07 0.13 6.33 16 15 H 0.03 1.41 8.08 -2.39 -0.02 1.39 16 16 N -0.73 -34.59 5.12 -322.57 -1.65 -36.25 16 17 C -0.23 -12.62 9.93 84.03 0.83 -11.78 16 18 H 0.07 3.58 7.83 -2.91 -0.02 3.56 16 19 C -0.06 -3.49 5.50 84.86 0.47 -3.02 16 20 N -0.96 -56.99 13.06 21.65 0.28 -56.71 16 21 Si 0.96 45.98 29.55 68.60 2.03 48.01 16 22 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 24 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 25 C 0.09 3.05 4.94 86.31 0.43 3.48 16 26 C -0.07 -2.19 7.24 22.27 0.16 -2.03 16 27 C -0.11 -3.42 9.95 22.30 0.22 -3.20 16 28 C 0.13 3.96 6.61 40.36 0.27 4.23 16 29 N -0.51 -15.38 10.23 -176.58 -1.81 -17.18 16 30 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.11 0.89 8.07 -2.38 -0.02 0.87 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 34 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 35 H 0.15 3.61 8.06 -2.91 -0.02 3.59 16 36 H 0.08 1.83 8.14 -2.39 -0.02 1.82 16 37 H 0.09 2.28 7.03 -2.39 -0.02 2.26 16 38 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.38 19.16 7.80 -92.71 -0.72 18.44 16 43 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 44 H 0.08 2.97 4.54 -2.39 -0.01 2.96 16 45 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 46 H 0.14 4.00 7.02 -2.91 -0.02 3.98 16 47 H 0.14 4.18 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -71.30 383.62 2.09 -69.21 By element: Atomic # 1 Polarization: 33.15 SS G_CDS: 0.27 Total: 33.42 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 5.48 Total: 0.72 kcal Atomic # 7 Polarization: -124.88 SS G_CDS: -5.63 Total: -130.51 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.06 Total: -20.86 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -71.30 2.09 -69.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000516138.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.286 kcal (2) G-P(sol) polarization free energy of solvation -71.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.085 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds