Wall clock time and date at job start Tue Mar 31 2020 22:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39927 * 125.99641 * 2 1 4 4 C 1.38325 * 107.12179 * 180.02562 * 3 2 1 5 5 C 1.41359 * 131.72348 * 179.97438 * 4 3 2 6 6 C 1.35517 * 119.54430 * 179.75420 * 5 4 3 7 7 C 1.46454 * 118.96446 * 0.53587 * 6 5 4 8 8 C 1.47491 * 120.20381 * 179.72066 * 7 6 5 9 9 O 1.21602 * 120.00547 * 179.72772 * 8 7 6 10 10 N 1.34777 * 119.99673 * 359.72510 * 8 7 6 11 11 C 1.46498 * 119.99996 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47312 * 180.02562 * 11 10 8 13 13 C 1.29460 * 117.69667 * 94.99725 * 12 11 10 14 14 C 1.50324 * 123.65257 * 181.14156 * 13 12 11 15 15 N 1.47122 * 109.10054 * 348.53834 * 14 13 12 16 16 C 1.36943 * 121.53573 * 223.15756 * 15 14 13 17 17 H 1.07994 * 120.00029 * 156.23909 * 16 15 14 18 18 C 1.38816 * 119.99651 * 336.23681 * 16 15 14 19 19 N 1.31620 * 119.99998 * 344.48177 * 18 16 15 20 20 Si 1.86801 * 119.99831 * 164.48178 * 18 16 15 21 21 H 1.48492 * 109.47157 * 60.00093 * 20 18 16 22 22 H 1.48503 * 109.46921 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46909 * 299.99543 * 20 18 16 24 24 C 1.47335 * 117.09210 * 43.38437 * 15 14 13 25 25 C 1.49964 * 117.69405 * 275.02064 * 12 11 10 26 26 C 1.36309 * 119.59712 * 359.45036 * 7 6 5 27 27 N 1.36535 * 120.65515 * 0.27273 * 26 7 6 28 28 C 1.35274 * 126.00299 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47450 * 269.99524 * 1 2 3 30 30 H 1.08995 * 109.47492 * 30.00066 * 1 2 3 31 31 H 1.09007 * 109.46890 * 149.99371 * 1 2 3 32 32 H 1.08001 * 126.43704 * 0.02562 * 3 2 1 33 33 H 1.07994 * 120.22756 * 0.04971 * 5 4 3 34 34 H 1.08003 * 120.52027 * 180.25465 * 6 5 4 35 35 H 0.97001 * 120.00347 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.47191 * 59.99885 * 11 10 8 37 37 H 1.09004 * 109.47250 * 299.99845 * 11 10 8 38 38 H 1.08001 * 118.17174 * 0.86235 * 13 12 11 39 39 H 1.08996 * 109.52061 * 108.64573 * 14 13 12 40 40 H 1.09003 * 109.51767 * 228.83796 * 14 13 12 41 41 H 0.97003 * 119.99843 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.78168 * 178.39332 * 24 15 14 43 43 H 1.09002 * 109.77935 * 57.58413 * 24 15 14 44 44 H 1.09005 * 109.31203 * 281.28477 * 25 12 11 45 45 H 1.08995 * 109.31683 * 40.71451 * 25 12 11 46 46 H 1.08007 * 119.67139 * 180.30016 * 26 7 6 47 47 H 1.07994 * 125.52990 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1321 0.0000 4 6 3.6382 0.6846 -0.0006 5 6 4.8697 1.3786 -0.0013 6 6 6.0307 0.6795 0.0033 7 6 5.9773 -0.7840 -0.0031 8 6 7.2242 -1.5720 -0.0046 9 8 7.1756 -2.7870 -0.0048 10 7 8.4173 -0.9452 -0.0056 11 6 9.6558 -1.7278 -0.0076 12 6 10.8394 -0.7950 -0.0078 13 6 11.3750 -0.5022 1.1338 14 6 12.5423 0.4317 1.2913 15 7 13.1174 0.7112 -0.0337 16 6 14.4714 0.7255 -0.2383 17 1 14.8701 0.5486 -1.2262 18 6 15.3313 0.9676 0.8242 19 7 14.8659 1.4787 1.9443 20 14 17.1491 0.5679 0.6644 21 1 17.7316 1.3516 -0.4543 22 1 17.8455 0.9163 1.9289 23 1 17.3148 -0.8824 0.3920 24 6 12.1729 0.9805 -1.1319 25 6 11.3136 -0.2711 -1.3305 26 6 4.7684 -1.4136 -0.0021 27 7 3.6084 -0.6935 -0.0008 28 6 2.3021 -1.0943 -0.0005 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5140 32 1 2.0034 2.1617 0.0004 33 1 4.8853 2.4584 -0.0007 34 1 6.9805 1.1937 0.0069 35 1 8.4561 0.0240 -0.0050 36 1 9.6874 -2.3557 -0.8980 37 1 9.6896 -2.3568 0.8820 38 1 10.9570 -0.9505 2.0231 39 1 12.2056 1.3615 1.7496 40 1 13.2987 -0.0340 1.9231 41 1 15.4667 1.6475 2.6869 42 1 12.7235 1.1989 -2.0469 43 1 11.5370 1.8270 -0.8723 44 1 11.9044 -1.0381 -1.8313 45 1 10.4518 -0.0222 -1.9497 46 1 4.7276 -2.4929 -0.0019 47 1 1.9601 -2.1187 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000762268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:35 Heat of formation + Delta-G solvation = 75.984315 kcal Electronic energy + Delta-G solvation = -27757.616420 eV Core-core repulsion = 23907.143576 eV Total energy + Delta-G solvation = -3850.472844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.43870 -39.86617 -37.86069 -36.55711 -35.08650 -33.63005 -32.90250 -31.80745 -30.88653 -29.78143 -28.37506 -27.76034 -26.67019 -24.44384 -23.28473 -22.82161 -22.67868 -21.28472 -20.94614 -20.00369 -18.25383 -17.71606 -17.31955 -16.56609 -15.99704 -15.85950 -15.69979 -15.26903 -14.92266 -14.78373 -14.66554 -14.22109 -13.86934 -13.69746 -13.47573 -13.43850 -13.42049 -13.23690 -13.01291 -12.47292 -12.31731 -12.11265 -11.95605 -11.76780 -11.61449 -11.42920 -11.21318 -10.94435 -10.76327 -10.69260 -10.47555 -10.37452 -10.18390 -9.87278 -9.65154 -9.11177 -8.72471 -8.64451 -8.12442 -7.70487 -6.79839 -5.83926 -3.22743 0.41364 0.85570 2.23247 2.36738 2.59154 2.76645 3.36616 3.40431 3.42439 3.43672 3.45975 4.16063 4.36843 4.46056 4.49385 4.60219 4.63856 4.88788 4.94169 5.08281 5.19901 5.29650 5.34745 5.35090 5.35381 5.44059 5.53559 5.59619 5.66708 5.73968 5.76158 5.88050 5.95445 6.01678 6.10868 6.11710 6.28272 6.35176 6.46449 6.55223 6.61695 6.68230 6.81472 6.93388 7.10387 7.19906 7.26269 7.45755 7.67759 7.77165 8.08053 8.33479 9.14904 9.77597 10.35604 11.26562 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030079 B = 0.001864 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.650304 B =15019.642674 C =15436.342373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.116 4.116 3 C -0.198 4.198 4 C 0.047 3.953 5 C -0.089 4.089 6 C -0.103 4.103 7 C -0.168 4.168 8 C 0.568 3.432 9 O -0.547 6.547 10 N -0.710 5.710 11 C 0.158 3.842 12 C -0.169 4.169 13 C -0.121 4.121 14 C 0.193 3.807 15 N -0.594 5.594 16 C -0.247 4.247 17 H 0.069 0.931 18 C -0.001 4.001 19 N -0.910 5.910 20 Si 0.906 3.094 21 H -0.283 1.283 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.143 3.857 25 C -0.090 4.090 26 C 0.130 3.870 27 N -0.355 5.355 28 C -0.051 4.051 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.146 0.854 33 H 0.148 0.852 34 H 0.141 0.859 35 H 0.402 0.598 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.042 0.958 40 H 0.094 0.906 41 H 0.255 0.745 42 H 0.057 0.943 43 H 0.023 0.977 44 H 0.065 0.935 45 H 0.053 0.947 46 H 0.174 0.826 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.910 -1.836 -3.421 26.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C -0.222 4.222 4 C -0.057 4.057 5 C -0.108 4.108 6 C -0.124 4.124 7 C -0.174 4.174 8 C 0.355 3.645 9 O -0.427 6.427 10 N -0.360 5.360 11 C 0.035 3.965 12 C -0.169 4.169 13 C -0.142 4.142 14 C 0.068 3.932 15 N -0.318 5.318 16 C -0.376 4.376 17 H 0.086 0.914 18 C -0.199 4.199 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.209 1.209 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.017 3.983 25 C -0.129 4.129 26 C 0.007 3.993 27 N -0.020 5.020 28 C -0.177 4.177 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.164 0.836 33 H 0.165 0.835 34 H 0.158 0.842 35 H 0.238 0.762 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.060 0.940 40 H 0.112 0.888 41 H 0.065 0.935 42 H 0.076 0.924 43 H 0.041 0.959 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.191 0.809 47 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -25.656 -2.871 -3.279 26.024 hybrid contribution 1.046 0.179 0.085 1.064 sum -24.610 -2.691 -3.194 24.962 Atomic orbital electron populations 1.20220 0.89337 1.02496 1.02041 1.19516 0.95920 0.92121 1.04412 1.21018 0.89527 0.98900 1.12801 1.18965 0.95679 0.81809 1.09297 1.20507 0.89112 1.00374 1.00767 1.22028 0.98954 0.91366 1.00028 1.20288 0.92677 0.93952 1.10435 1.17685 0.83125 0.86980 0.76726 1.90793 1.87463 1.13407 1.51030 1.46050 1.05235 1.10873 1.73871 1.20511 0.80964 0.92891 1.02101 1.20486 0.97807 1.02335 0.96308 1.23314 0.97961 0.96844 0.96101 1.19796 0.91050 0.94100 0.88283 1.44147 1.01752 1.81287 1.04568 1.19143 0.80979 1.42014 0.95513 0.91352 1.24987 0.98114 0.99390 0.97370 1.69992 1.34580 1.45994 1.04951 0.86315 0.84908 0.78376 0.76861 1.20906 1.21615 1.21059 1.20957 0.91781 0.93009 0.92584 1.20760 0.98703 0.99922 0.93555 1.21707 0.83134 0.98231 0.96225 1.41436 1.05395 1.07094 1.48028 1.21729 0.79677 1.00089 1.16249 0.91446 0.91462 0.91775 0.83607 0.83453 0.84167 0.76194 0.91312 0.91393 0.88733 0.94016 0.88781 0.93518 0.92419 0.95941 0.91691 0.92876 0.80853 0.81288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.36 36.00 0.37 -0.11 16 2 C -0.12 -1.00 6.10 -105.05 -0.64 -1.64 16 3 C -0.20 -1.85 10.91 -38.92 -0.42 -2.28 16 4 C 0.05 0.49 6.71 -83.95 -0.56 -0.08 16 5 C -0.09 -0.81 10.09 -39.37 -0.40 -1.21 16 6 C -0.10 -0.98 9.73 -37.25 -0.36 -1.35 16 7 C -0.17 -1.89 5.98 -103.51 -0.62 -2.51 16 8 C 0.57 7.62 7.77 -12.49 -0.10 7.52 16 9 O -0.55 -8.98 16.28 5.28 0.09 -8.89 16 10 N -0.71 -8.97 5.51 -62.54 -0.34 -9.31 16 11 C 0.16 2.27 5.66 -5.20 -0.03 2.24 16 12 C -0.17 -2.77 5.22 -101.00 -0.53 -3.29 16 13 C -0.12 -2.22 9.47 -35.78 -0.34 -2.56 16 14 C 0.19 4.41 5.25 -5.04 -0.03 4.38 16 15 N -0.59 -14.40 3.01 -173.58 -0.52 -14.93 16 16 C -0.25 -6.63 9.71 -15.05 -0.15 -6.78 16 17 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 18 C 0.00 -0.02 5.01 -17.43 -0.09 -0.11 16 19 N -0.91 -25.71 11.07 55.49 0.61 -25.09 16 20 Si 0.91 21.41 29.58 -169.99 -5.03 16.39 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.14 2.84 6.57 -3.53 -0.02 2.82 16 25 C -0.09 -1.50 5.95 -28.18 -0.17 -1.67 16 26 C 0.13 1.40 10.45 -16.15 -0.17 1.23 16 27 N -0.35 -3.73 2.93 -60.50 -0.18 -3.90 16 28 C -0.05 -0.46 11.49 -16.46 -0.19 -0.65 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.15 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.15 0.96 8.06 -52.49 -0.42 0.53 16 34 H 0.14 1.07 6.58 -52.48 -0.35 0.73 16 35 H 0.40 4.41 6.56 -40.82 -0.27 4.14 16 36 H 0.07 1.01 8.11 -51.93 -0.42 0.59 16 37 H 0.07 1.01 7.78 -51.93 -0.40 0.61 16 38 H 0.09 1.55 7.73 -52.49 -0.41 1.15 16 39 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.09 2.42 6.40 -51.93 -0.33 2.09 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.17 1.68 7.56 -52.48 -0.40 1.28 16 47 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 388.18 15.07 5.85 5.85 Total: -1.00 -31.68 388.18 -10.72 -42.40 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.76 Total: 3.51 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -4.44 Total: -6.03 kcal Atomic # 7 Polarization: -52.80 SS G_CDS: -0.43 Total: -53.23 kcal Atomic # 8 Polarization: -8.98 SS G_CDS: 0.09 Total: -8.89 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.03 Total: 16.39 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.68 -10.72 -42.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000762268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.386 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds