Wall clock time and date at job start Tue Mar 31 2020 22:15:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39927 * 125.99641 * 2 1 4 4 C 1.38325 * 107.12179 * 180.02562 * 3 2 1 5 5 C 1.41359 * 131.72348 * 179.97438 * 4 3 2 6 6 C 1.35517 * 119.54430 * 179.75420 * 5 4 3 7 7 C 1.46454 * 118.96446 * 0.53587 * 6 5 4 8 8 C 1.47491 * 120.20381 * 179.72066 * 7 6 5 9 9 O 1.21602 * 120.00547 * 179.72772 * 8 7 6 10 10 N 1.34777 * 119.99673 * 359.72510 * 8 7 6 11 11 C 1.46498 * 119.99996 * 180.02562 * 10 8 7 12 12 C 1.50698 * 109.47312 * 180.02562 * 11 10 8 13 13 C 1.29460 * 117.69667 * 94.99725 * 12 11 10 14 14 C 1.50324 * 123.65257 * 181.14156 * 13 12 11 15 15 N 1.47122 * 109.10054 * 348.53834 * 14 13 12 16 16 C 1.36943 * 121.53573 * 223.15756 * 15 14 13 17 17 H 1.07994 * 120.00029 * 156.23909 * 16 15 14 18 18 C 1.38816 * 119.99651 * 336.23681 * 16 15 14 19 19 N 1.31620 * 119.99998 * 344.48177 * 18 16 15 20 20 Si 1.86801 * 119.99831 * 164.48178 * 18 16 15 21 21 H 1.48492 * 109.47157 * 60.00093 * 20 18 16 22 22 H 1.48503 * 109.46921 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46909 * 299.99543 * 20 18 16 24 24 C 1.47335 * 117.09210 * 43.38437 * 15 14 13 25 25 C 1.49964 * 117.69405 * 275.02064 * 12 11 10 26 26 C 1.36309 * 119.59712 * 359.45036 * 7 6 5 27 27 N 1.36535 * 120.65515 * 0.27273 * 26 7 6 28 28 C 1.35274 * 126.00299 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47450 * 269.99524 * 1 2 3 30 30 H 1.08995 * 109.47492 * 30.00066 * 1 2 3 31 31 H 1.09007 * 109.46890 * 149.99371 * 1 2 3 32 32 H 1.08001 * 126.43704 * 0.02562 * 3 2 1 33 33 H 1.07994 * 120.22756 * 0.04971 * 5 4 3 34 34 H 1.08003 * 120.52027 * 180.25465 * 6 5 4 35 35 H 0.97001 * 120.00347 * 0.02562 * 10 8 7 36 36 H 1.08996 * 109.47191 * 59.99885 * 11 10 8 37 37 H 1.09004 * 109.47250 * 299.99845 * 11 10 8 38 38 H 1.08001 * 118.17174 * 0.86235 * 13 12 11 39 39 H 1.08996 * 109.52061 * 108.64573 * 14 13 12 40 40 H 1.09003 * 109.51767 * 228.83796 * 14 13 12 41 41 H 0.97003 * 119.99843 * 179.97438 * 19 18 16 42 42 H 1.08998 * 109.78168 * 178.39332 * 24 15 14 43 43 H 1.09002 * 109.77935 * 57.58413 * 24 15 14 44 44 H 1.09005 * 109.31203 * 281.28477 * 25 12 11 45 45 H 1.08995 * 109.31683 * 40.71451 * 25 12 11 46 46 H 1.08007 * 119.67139 * 180.30016 * 26 7 6 47 47 H 1.07994 * 125.52990 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1321 0.0000 4 6 3.6382 0.6846 -0.0006 5 6 4.8697 1.3786 -0.0013 6 6 6.0307 0.6795 0.0033 7 6 5.9773 -0.7840 -0.0031 8 6 7.2242 -1.5720 -0.0046 9 8 7.1756 -2.7870 -0.0048 10 7 8.4173 -0.9452 -0.0056 11 6 9.6558 -1.7278 -0.0076 12 6 10.8394 -0.7950 -0.0078 13 6 11.3750 -0.5022 1.1338 14 6 12.5423 0.4317 1.2913 15 7 13.1174 0.7112 -0.0337 16 6 14.4714 0.7255 -0.2383 17 1 14.8701 0.5486 -1.2262 18 6 15.3313 0.9676 0.8242 19 7 14.8659 1.4787 1.9443 20 14 17.1491 0.5679 0.6644 21 1 17.7316 1.3516 -0.4543 22 1 17.8455 0.9163 1.9289 23 1 17.3148 -0.8824 0.3920 24 6 12.1729 0.9805 -1.1319 25 6 11.3136 -0.2711 -1.3305 26 6 4.7684 -1.4136 -0.0021 27 7 3.6084 -0.6935 -0.0008 28 6 2.3021 -1.0943 -0.0005 29 1 -0.3634 -0.0001 1.0276 30 1 -0.3634 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5140 32 1 2.0034 2.1617 0.0004 33 1 4.8853 2.4584 -0.0007 34 1 6.9805 1.1937 0.0069 35 1 8.4561 0.0240 -0.0050 36 1 9.6874 -2.3557 -0.8980 37 1 9.6896 -2.3568 0.8820 38 1 10.9570 -0.9505 2.0231 39 1 12.2056 1.3615 1.7496 40 1 13.2987 -0.0340 1.9231 41 1 15.4667 1.6475 2.6869 42 1 12.7235 1.1989 -2.0469 43 1 11.5370 1.8270 -0.8723 44 1 11.9044 -1.0381 -1.8313 45 1 10.4518 -0.0222 -1.9497 46 1 4.7276 -2.4929 -0.0019 47 1 1.9601 -2.1187 -0.0006 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000762268.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:34 Heat of formation + Delta-G solvation = 59.682025 kcal Electronic energy + Delta-G solvation = -27758.323340 eV Core-core repulsion = 23907.143576 eV Total energy + Delta-G solvation = -3851.179765 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.13778 -40.93761 -39.36534 -37.32096 -36.48246 -34.69945 -34.14031 -32.80920 -32.25903 -31.41603 -29.23523 -28.69072 -27.83324 -25.95453 -24.47540 -24.05689 -23.50959 -22.81580 -21.90523 -20.81486 -19.50914 -19.02163 -18.28417 -17.38607 -17.28150 -16.98787 -16.94607 -16.63583 -16.10478 -15.86192 -15.55169 -15.39815 -15.28124 -15.14693 -14.85704 -14.48111 -14.09896 -13.96592 -13.89192 -13.81421 -13.62504 -13.27423 -13.06675 -12.92752 -12.78059 -12.61933 -12.58122 -12.34487 -12.26021 -12.11332 -11.94897 -11.70319 -11.41476 -11.36402 -11.21098 -10.67731 -10.20662 -9.66901 -9.34157 -8.74790 -8.40924 -7.88165 -5.28915 -0.38211 0.15119 1.12417 1.47513 1.50096 1.56264 1.58755 1.60366 1.98400 2.40515 2.51631 2.58618 3.29072 3.45065 3.56810 3.62563 3.79627 3.83879 3.88106 3.96807 3.98486 4.30029 4.37937 4.43698 4.53602 4.55061 4.63083 4.72480 4.77363 4.80852 4.84482 4.92236 4.95377 5.00239 5.03238 5.10973 5.21659 5.25057 5.25577 5.29722 5.40586 5.48794 5.49394 5.61684 5.76458 5.90508 5.94073 6.15930 6.23931 6.34167 6.43800 7.06282 7.13840 7.83968 8.37719 9.20183 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.030079 B = 0.001864 C = 0.001813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.650304 B =15019.642674 C =15436.342373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.123 4.123 3 C -0.204 4.204 4 C 0.019 3.981 5 C -0.087 4.087 6 C -0.112 4.112 7 C -0.179 4.179 8 C 0.572 3.428 9 O -0.581 6.581 10 N -0.702 5.702 11 C 0.167 3.833 12 C -0.140 4.140 13 C -0.139 4.139 14 C 0.203 3.797 15 N -0.614 5.614 16 C -0.257 4.257 17 H 0.070 0.930 18 C -0.053 4.053 19 N -0.939 5.939 20 Si 0.967 3.033 21 H -0.275 1.275 22 H -0.295 1.295 23 H -0.281 1.281 24 C 0.138 3.862 25 C -0.084 4.084 26 C 0.128 3.872 27 N -0.364 5.364 28 C -0.062 4.062 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.163 0.837 33 H 0.172 0.828 34 H 0.158 0.842 35 H 0.412 0.588 36 H 0.073 0.927 37 H 0.065 0.935 38 H 0.113 0.887 39 H 0.016 0.984 40 H 0.057 0.943 41 H 0.250 0.750 42 H 0.058 0.942 43 H 0.029 0.971 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.178 0.822 47 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.856 -1.902 -4.642 28.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.127 4.127 3 C -0.228 4.228 4 C -0.084 4.084 5 C -0.105 4.105 6 C -0.132 4.132 7 C -0.185 4.185 8 C 0.360 3.640 9 O -0.463 6.463 10 N -0.353 5.353 11 C 0.045 3.955 12 C -0.141 4.141 13 C -0.160 4.160 14 C 0.078 3.922 15 N -0.338 5.338 16 C -0.387 4.387 17 H 0.088 0.912 18 C -0.248 4.248 19 N -0.585 5.585 20 Si 0.795 3.205 21 H -0.201 1.201 22 H -0.221 1.221 23 H -0.207 1.207 24 C 0.013 3.987 25 C -0.123 4.123 26 C 0.005 3.995 27 N -0.029 5.029 28 C -0.188 4.188 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.180 0.820 33 H 0.190 0.810 34 H 0.175 0.825 35 H 0.250 0.750 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.131 0.869 39 H 0.034 0.966 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.047 0.953 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.195 0.805 47 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -27.631 -2.912 -4.528 28.151 hybrid contribution 1.490 0.227 0.392 1.557 sum -26.141 -2.685 -4.136 26.602 Atomic orbital electron populations 1.20286 0.87352 1.03467 1.02798 1.19952 0.97380 0.91765 1.03583 1.21397 0.89391 1.00019 1.12007 1.19393 0.96662 0.82060 1.10299 1.20826 0.88497 1.01591 0.99635 1.22170 0.99969 0.90465 1.00596 1.20158 0.91763 0.94750 1.11846 1.17911 0.83699 0.86611 0.75769 1.90775 1.87930 1.14924 1.52693 1.45860 1.04501 1.11279 1.73626 1.20293 0.80645 0.92332 1.02278 1.20587 0.97360 1.00680 0.95491 1.22971 0.97292 0.97848 0.97843 1.19443 0.91593 0.93826 0.87318 1.44423 1.01777 1.81712 1.05928 1.19479 0.82611 1.41073 0.95574 0.91199 1.25715 1.01893 0.99914 0.97304 1.70151 1.35508 1.47405 1.05477 0.85344 0.80439 0.78108 0.76589 1.20076 1.22107 1.20732 1.21152 0.91544 0.94822 0.91230 1.20699 0.99358 0.98169 0.94081 1.21799 0.83395 0.98547 0.95770 1.41591 1.05651 1.07296 1.48408 1.22270 0.79299 1.01446 1.15788 0.90700 0.90679 0.90670 0.81977 0.81036 0.82477 0.74997 0.90893 0.91646 0.86938 0.96588 0.92488 0.94135 0.92293 0.95251 0.91842 0.89331 0.80495 0.79252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.36 71.23 0.74 -0.01 16 2 C -0.12 -1.90 6.10 -20.14 -0.12 -2.02 16 3 C -0.20 -3.44 10.91 22.70 0.25 -3.19 16 4 C 0.02 0.38 6.71 38.99 0.26 0.64 16 5 C -0.09 -1.42 10.09 22.41 0.23 -1.19 16 6 C -0.11 -1.93 9.73 23.78 0.23 -1.70 16 7 C -0.18 -3.83 5.98 -19.15 -0.11 -3.95 16 8 C 0.57 14.58 7.77 86.68 0.67 15.25 16 9 O -0.58 -18.58 16.28 -4.04 -0.07 -18.65 16 10 N -0.70 -16.26 5.51 -470.05 -2.59 -18.85 16 11 C 0.17 4.46 5.66 85.63 0.48 4.94 16 12 C -0.14 -4.35 5.22 -15.15 -0.08 -4.43 16 13 C -0.14 -5.01 9.47 27.10 0.26 -4.76 16 14 C 0.20 9.57 5.25 85.40 0.45 10.01 16 15 N -0.61 -30.02 3.01 -703.08 -2.12 -32.14 16 16 C -0.26 -13.95 9.71 84.03 0.82 -13.13 16 17 H 0.07 3.67 7.88 -2.91 -0.02 3.65 16 18 C -0.05 -2.95 5.01 84.86 0.43 -2.52 16 19 N -0.94 -54.71 11.07 21.65 0.24 -54.47 16 20 Si 0.97 44.62 29.58 68.60 2.03 46.65 16 21 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 22 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 23 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 24 C 0.14 5.30 6.57 86.26 0.57 5.87 16 25 C -0.08 -2.61 5.95 29.65 0.18 -2.43 16 26 C 0.13 2.66 10.45 83.51 0.87 3.53 16 27 N -0.36 -7.23 2.93 -345.32 -1.01 -8.25 16 28 C -0.06 -1.03 11.49 83.26 0.96 -0.07 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.57 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.52 8.14 -2.38 -0.02 0.51 16 32 H 0.16 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 34 H 0.16 2.03 6.58 -2.91 -0.02 2.01 16 35 H 0.41 7.98 6.56 -92.71 -0.61 7.37 16 36 H 0.07 1.95 8.11 -2.39 -0.02 1.93 16 37 H 0.07 1.83 7.78 -2.38 -0.02 1.81 16 38 H 0.11 3.62 7.73 -2.91 -0.02 3.60 16 39 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.06 3.07 6.40 -2.39 -0.02 3.06 16 41 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 42 H 0.06 2.22 7.96 -2.39 -0.02 2.20 16 43 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 45 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 46 H 0.18 3.37 7.56 -2.91 -0.02 3.34 16 47 H 0.19 2.08 8.06 -2.91 -0.02 2.06 16 Total: -1.00 -69.40 388.18 3.93 -65.47 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.38 Total: 19.40 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: 7.07 Total: 0.84 kcal Atomic # 7 Polarization: -108.22 SS G_CDS: -5.48 Total: -113.70 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: -0.07 Total: -18.65 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -69.40 3.93 -65.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000762268.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.148 kcal (2) G-P(sol) polarization free energy of solvation -69.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds