Wall clock time and date at job start Tue Mar 31 2020 22:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39317 * 119.06358 * 2 1 4 4 C 1.38853 * 119.57741 * 180.32734 * 3 2 1 5 5 C 1.47907 * 121.11216 * 179.64577 * 4 3 2 6 6 O 1.21534 * 120.00145 * 233.53358 * 5 4 3 7 7 N 1.34782 * 119.99741 * 53.53668 * 5 4 3 8 8 C 1.46927 * 120.62866 * 356.00592 * 7 5 4 9 9 C 1.53199 * 108.76976 * 126.41699 * 8 7 5 10 10 C 1.53042 * 109.31376 * 54.63527 * 9 8 7 11 11 C 1.53042 * 109.53616 * 298.63566 * 10 9 8 12 12 H 1.09000 * 109.49471 * 301.38060 * 11 10 9 13 13 N 1.46499 * 109.49426 * 181.31875 * 11 10 9 14 14 C 1.36941 * 119.99981 * 154.99952 * 13 11 10 15 15 H 1.08001 * 119.99970 * 359.97438 * 14 13 11 16 16 C 1.38804 * 120.00035 * 179.97438 * 14 13 11 17 17 N 1.31620 * 120.00192 * 359.71939 * 16 14 13 18 18 Si 1.86798 * 120.00292 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47006 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47439 * 119.99704 * 18 16 14 21 21 H 1.48497 * 109.47277 * 240.00336 * 18 16 14 22 22 C 1.46925 * 120.62900 * 176.03447 * 7 5 4 23 23 C 1.41825 * 117.77584 * 359.37598 * 4 3 2 24 24 C 1.40097 * 121.36417 * 180.25290 * 23 4 3 25 25 C 1.36250 * 119.64171 * 179.97438 * 24 23 4 26 26 C 1.39355 * 120.83765 * 0.04074 * 25 24 23 27 27 C 1.36065 * 121.04158 * 359.97438 * 26 25 24 28 28 C 1.40710 * 119.74925 * 0.02562 * 27 26 25 29 29 N 1.30973 * 119.05419 * 179.64417 * 2 1 3 30 30 H 1.08991 * 109.47068 * 270.36665 * 1 2 3 31 31 H 1.09007 * 109.46801 * 30.35963 * 1 2 3 32 32 H 1.08998 * 109.47365 * 150.36156 * 1 2 3 33 33 H 1.08000 * 120.20693 * 359.97438 * 3 2 1 34 34 H 1.08993 * 109.58645 * 6.63117 * 8 7 5 35 35 H 1.09001 * 109.70748 * 246.27053 * 8 7 5 36 36 H 1.08994 * 109.49985 * 294.68054 * 9 8 7 37 37 H 1.09001 * 109.51911 * 174.60426 * 9 8 7 38 38 H 1.08999 * 109.45790 * 178.61010 * 10 9 8 39 39 H 1.09004 * 109.44754 * 58.64473 * 10 9 8 40 40 H 0.96996 * 120.00054 * 334.99210 * 13 11 10 41 41 H 0.97003 * 120.00565 * 180.02562 * 17 16 14 42 42 H 1.08999 * 109.58328 * 113.79715 * 22 7 5 43 43 H 1.08997 * 109.58811 * 353.37434 * 22 7 5 44 44 H 1.07998 * 120.18204 * 0.02661 * 24 23 4 45 45 H 1.08000 * 119.58714 * 180.02562 * 25 24 23 46 46 H 1.07992 * 119.47774 * 180.02562 * 26 25 24 47 47 H 1.08002 * 120.12679 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1838 1.2177 0.0000 4 6 3.5722 1.2302 -0.0069 5 6 4.3251 2.5033 -0.0150 6 8 5.1687 2.7051 -0.8663 7 7 4.0756 3.4397 0.9219 8 6 2.9998 3.2478 1.9040 9 6 3.5799 3.4227 3.3111 10 6 4.2815 4.7797 3.4042 11 6 5.4329 4.8307 2.3973 12 1 6.1340 4.0224 2.6051 13 7 6.1235 6.1178 2.5091 14 6 7.4334 6.2277 2.1252 15 1 7.9574 5.3653 1.7403 16 6 8.0875 7.4474 2.2306 17 7 7.4473 8.4997 2.6944 18 14 9.8741 7.5974 1.7063 19 1 10.3590 6.2814 1.2181 20 1 9.9881 8.6019 0.6185 21 1 10.6959 8.0280 2.8658 22 6 4.8738 4.6718 0.9799 23 6 4.2444 -0.0186 -0.0001 24 6 5.6434 -0.0937 -0.0010 25 6 6.2528 -1.3123 0.0062 26 6 5.5022 -2.4864 0.0138 27 6 4.1420 -2.4495 0.0146 28 6 3.4771 -1.2094 0.0072 29 7 2.1431 -1.1449 0.0071 30 1 -0.3633 0.0066 1.0276 31 1 -0.3633 0.8868 -0.5195 32 1 -0.3634 -0.8932 -0.5082 33 1 1.6319 2.1461 -0.0004 34 1 2.5860 2.2447 1.8015 35 1 2.2148 3.9857 1.7381 36 1 4.2981 2.6274 3.5099 37 1 2.7752 3.3781 4.0450 38 1 4.6739 4.9171 4.4118 39 1 3.5683 5.5731 3.1808 40 1 5.6529 6.8923 2.8550 41 1 7.9043 9.3521 2.7678 42 1 4.2433 5.5273 0.7377 43 1 5.6964 4.6082 0.2676 44 1 6.2356 0.8094 -0.0066 45 1 7.3313 -1.3691 0.0059 46 1 6.0080 -3.4405 0.0199 47 1 3.5748 -3.3686 0.0201 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000846077.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:21:37 Heat of formation + Delta-G solvation = 12.837195 kcal Electronic energy + Delta-G solvation = -29376.662223 eV Core-core repulsion = 25523.451114 eV Total energy + Delta-G solvation = -3853.211109 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.36871 -40.89655 -38.80659 -38.39993 -36.32190 -34.77883 -33.80783 -33.00763 -32.81674 -31.31007 -29.95677 -28.73831 -27.17132 -25.94438 -25.05879 -23.96750 -23.53216 -23.32340 -21.64172 -20.23368 -19.22105 -19.17458 -18.61492 -18.20956 -17.28141 -16.87409 -16.52588 -16.21328 -15.77740 -15.70440 -15.61912 -15.43759 -15.26292 -15.14655 -14.91558 -14.39115 -14.19638 -14.07758 -13.94447 -13.81324 -13.71154 -13.15881 -13.04238 -12.94765 -12.61384 -12.57114 -12.39953 -12.35164 -12.20635 -12.11141 -11.96139 -11.76833 -11.70465 -11.42230 -11.28608 -11.13092 -10.51829 -9.88897 -9.72229 -9.31528 -9.06664 -8.01664 -5.31054 -0.91112 -0.29669 0.66105 1.38746 1.43201 1.43658 1.53249 1.74449 1.90441 2.50607 2.96053 3.08806 3.16621 3.31691 3.56462 3.57654 3.69015 3.77685 3.91767 3.97915 4.05444 4.11081 4.14015 4.25641 4.31332 4.33332 4.36867 4.43185 4.52712 4.65263 4.68764 4.80685 4.82859 4.85292 4.88409 4.95630 4.96549 5.02842 5.07705 5.17453 5.31293 5.31913 5.36715 5.39642 5.42399 5.48885 5.50633 5.80768 6.20898 6.22450 6.79885 6.87529 7.28165 7.99110 8.25083 9.20989 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.003093 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.369515 B = 9049.438142 C =10272.240790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.155 3.845 3 C -0.130 4.130 4 C -0.073 4.073 5 C 0.553 3.447 6 O -0.575 6.575 7 N -0.590 5.590 8 C 0.092 3.908 9 C -0.121 4.121 10 C -0.117 4.117 11 C 0.168 3.832 12 H 0.029 0.971 13 N -0.727 5.727 14 C -0.246 4.246 15 H 0.064 0.936 16 C -0.065 4.065 17 N -0.962 5.962 18 Si 0.966 3.034 19 H -0.274 1.274 20 H -0.291 1.291 21 H -0.287 1.287 22 C 0.107 3.893 23 C -0.094 4.094 24 C -0.120 4.120 25 C -0.109 4.109 26 C -0.089 4.089 27 C -0.100 4.100 28 C 0.117 3.883 29 N -0.476 5.476 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.082 0.918 33 H 0.172 0.828 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.054 0.946 37 H 0.114 0.886 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.379 0.621 41 H 0.253 0.747 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.106 0.894 45 H 0.148 0.852 46 H 0.169 0.831 47 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.165 -22.682 -1.623 28.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.002 3.998 3 C -0.150 4.150 4 C -0.084 4.084 5 C 0.341 3.659 6 O -0.456 6.456 7 N -0.321 5.321 8 C -0.029 4.029 9 C -0.159 4.159 10 C -0.155 4.155 11 C 0.058 3.942 12 H 0.047 0.953 13 N -0.367 5.367 14 C -0.378 4.378 15 H 0.082 0.918 16 C -0.258 4.258 17 N -0.612 5.612 18 Si 0.795 3.205 19 H -0.199 1.199 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.018 4.018 23 C -0.097 4.097 24 C -0.139 4.139 25 C -0.127 4.127 26 C -0.108 4.108 27 C -0.118 4.118 28 C -0.005 4.005 29 N -0.186 5.186 30 H 0.121 0.879 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.189 0.811 34 H 0.122 0.878 35 H 0.120 0.880 36 H 0.073 0.927 37 H 0.132 0.868 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.212 0.788 41 H 0.062 0.938 42 H 0.086 0.914 43 H 0.069 0.931 44 H 0.124 0.876 45 H 0.166 0.834 46 H 0.187 0.813 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.924 -23.428 -2.095 28.977 hybrid contribution 2.048 1.955 -0.387 2.858 sum -14.876 -21.473 -2.482 26.240 Atomic orbital electron populations 1.20932 0.84940 1.05054 1.05059 1.22052 0.99087 0.86751 0.91881 1.22538 0.91873 1.01523 0.99045 1.20282 0.95233 0.91967 1.00883 1.18582 0.82328 0.83636 0.81351 1.90784 1.35858 1.80024 1.38888 1.48235 1.34695 1.18486 1.30701 1.22378 0.88834 1.04418 0.87262 1.21866 1.01103 0.96043 0.96936 1.21738 0.96591 0.98594 0.98618 1.20631 0.93202 0.87781 0.92594 0.95311 1.42489 1.09921 1.07874 1.76464 1.19528 0.88976 0.94933 1.34341 0.91777 1.25458 1.02168 0.95608 1.02592 1.69787 1.37458 1.00565 1.53372 0.85186 0.80511 0.77477 0.77280 1.19857 1.21797 1.21407 1.22349 0.94429 0.84722 1.00277 1.18751 0.95097 0.92878 1.02959 1.21097 0.93206 0.99388 1.00182 1.21322 1.01860 0.91694 0.97847 1.21328 0.93434 0.99547 0.96514 1.21129 0.94840 0.96042 0.99815 1.19087 0.89255 0.93056 0.99077 1.67731 1.08264 1.29645 1.13000 0.87944 0.88189 0.89951 0.81070 0.87752 0.88040 0.92672 0.86783 0.91887 0.90821 0.78831 0.93762 0.91357 0.93093 0.87566 0.83420 0.81312 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.91 10.14 71.24 0.72 -0.19 16 2 C 0.16 2.76 6.78 42.95 0.29 3.05 16 3 C -0.13 -2.51 7.14 22.68 0.16 -2.34 16 4 C -0.07 -1.99 4.95 -19.68 -0.10 -2.09 16 5 C 0.55 18.77 6.57 86.80 0.57 19.34 16 6 O -0.58 -24.86 15.22 -3.82 -0.06 -24.91 16 7 N -0.59 -18.01 2.97 -822.26 -2.44 -20.46 16 8 C 0.09 1.86 5.56 86.36 0.48 2.34 16 9 C -0.12 -2.56 6.08 30.67 0.19 -2.37 16 10 C -0.12 -3.45 5.35 30.62 0.16 -3.29 16 11 C 0.17 6.71 2.92 45.07 0.13 6.84 16 12 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 13 N -0.73 -36.70 5.12 -322.58 -1.65 -38.35 16 14 C -0.25 -14.03 9.93 84.03 0.83 -13.19 16 15 H 0.06 3.68 7.83 -2.91 -0.02 3.65 16 16 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 17 N -0.96 -58.48 13.06 21.65 0.28 -58.20 16 18 Si 0.97 47.30 29.55 68.60 2.03 49.33 16 19 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 21 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 22 C 0.11 4.13 6.01 86.36 0.52 4.65 16 23 C -0.09 -2.66 5.76 -21.10 -0.12 -2.78 16 24 C -0.12 -3.45 9.25 22.26 0.21 -3.25 16 25 C -0.11 -2.33 9.96 22.08 0.22 -2.11 16 26 C -0.09 -1.46 9.94 22.03 0.22 -1.24 16 27 C -0.10 -1.89 9.98 22.37 0.22 -1.66 16 28 C 0.12 2.85 6.61 40.33 0.27 3.12 16 29 N -0.48 -10.59 10.19 -176.84 -1.80 -12.39 16 30 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.10 0.49 8.07 -2.38 -0.02 0.47 16 32 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.17 2.26 7.36 -2.91 -0.02 2.24 16 34 H 0.10 1.74 4.72 -2.39 -0.01 1.73 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.07 2.04 8.14 -2.38 -0.02 2.02 16 40 H 0.38 19.97 7.80 -92.71 -0.72 19.24 16 41 H 0.25 14.88 8.31 -92.71 -0.77 14.11 16 42 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 43 H 0.05 2.37 7.03 -2.39 -0.02 2.35 16 44 H 0.11 3.65 6.49 -2.91 -0.02 3.63 16 45 H 0.15 2.48 8.06 -2.91 -0.02 2.45 16 46 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 47 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -77.47 380.87 2.07 -75.41 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.27 Total: 28.10 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: 5.44 Total: 1.47 kcal Atomic # 7 Polarization: -123.78 SS G_CDS: -5.62 Total: -129.39 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -0.06 Total: -24.91 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -77.47 2.07 -75.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000846077.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.244 kcal (2) G-P(sol) polarization free energy of solvation -77.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds