Wall clock time and date at job start Tue Mar 31 2020 22:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38938 * 119.67517 * 2 1 4 4 C 1.36445 * 120.61581 * 180.27229 * 3 2 1 5 5 C 1.40107 * 119.82528 * 359.50668 * 4 3 2 6 6 C 1.41586 * 133.37223 * 180.17545 * 5 4 3 7 7 C 1.35862 * 107.72495 * 180.28532 * 6 5 4 8 8 C 1.47062 * 125.43181 * 179.97438 * 7 6 5 9 9 O 1.21652 * 119.99730 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00033 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99677 * 179.97438 * 10 8 7 12 12 C 1.50709 * 109.46817 * 180.02562 * 11 10 8 13 13 C 1.29447 * 117.69397 * 95.00338 * 12 11 10 14 14 C 1.50322 * 123.65138 * 180.86045 * 13 12 11 15 15 N 1.47009 * 109.16601 * 349.01679 * 14 13 12 16 16 C 1.36934 * 121.37871 * 222.97454 * 15 14 13 17 17 H 1.07993 * 120.00389 * 155.97015 * 16 15 14 18 18 C 1.38810 * 119.99703 * 335.96939 * 16 15 14 19 19 N 1.31622 * 120.00314 * 344.51763 * 18 16 15 20 20 Si 1.86801 * 120.00063 * 164.52275 * 18 16 15 21 21 H 1.48496 * 109.47287 * 89.99816 * 20 18 16 22 22 H 1.48508 * 109.47007 * 210.00118 * 20 18 16 23 23 H 1.48502 * 109.46822 * 329.99406 * 20 18 16 24 24 C 1.47339 * 117.24770 * 42.95101 * 15 14 13 25 25 C 1.49967 * 117.69307 * 274.74154 * 12 11 10 26 26 N 1.38155 * 109.14034 * 359.97438 * 7 6 5 27 27 H 0.96995 * 125.60621 * 180.02562 * 26 7 6 28 28 C 1.37483 * 108.78444 * 359.97438 * 26 7 6 29 29 C 1.37670 * 119.67483 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47207 * 269.98130 * 1 2 3 31 31 H 1.09006 * 109.47445 * 29.98432 * 1 2 3 32 32 H 1.09002 * 109.47417 * 149.98120 * 1 2 3 33 33 H 1.08007 * 119.69373 * 0.03546 * 3 2 1 34 34 H 1.07997 * 120.08831 * 179.72565 * 4 3 2 35 35 H 1.07998 * 126.13683 * 0.28304 * 6 5 4 36 36 H 0.96995 * 120.00160 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47416 * 299.99928 * 11 10 8 38 38 H 1.09000 * 109.46884 * 60.00949 * 11 10 8 39 39 H 1.07995 * 118.17586 * 0.87877 * 13 12 11 40 40 H 1.08999 * 109.52819 * 108.92634 * 14 13 12 41 41 H 1.09006 * 109.52139 * 229.11927 * 14 13 12 42 42 H 0.97003 * 120.00309 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.77739 * 57.80577 * 24 15 14 44 44 H 1.08998 * 109.78039 * 178.61883 * 24 15 14 45 45 H 1.09005 * 109.31636 * 281.29010 * 25 12 11 46 46 H 1.08998 * 109.31826 * 40.71574 * 25 12 11 47 47 H 1.07996 * 120.09368 * 359.95374 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1948 1.2072 0.0000 4 6 3.5591 1.2296 -0.0056 5 6 4.2758 0.0257 -0.0009 6 6 5.6575 -0.2833 -0.0013 7 6 5.7787 -1.6365 -0.0016 8 6 7.0483 -2.3787 -0.0026 9 8 8.1051 -1.7761 -0.0037 10 7 7.0410 -3.7264 -0.0022 11 6 8.3058 -4.4658 -0.0038 12 6 8.0223 -5.9459 -0.0037 13 6 8.0060 -6.5555 -1.1456 14 6 7.7197 -8.0228 -1.3025 15 7 7.7335 -8.6616 0.0214 16 6 8.3449 -9.8701 0.2237 17 1 8.6887 -10.1429 1.2104 18 6 8.5227 -10.7444 -0.8397 19 7 7.8517 -10.5659 -1.9579 20 14 9.7141 -12.1747 -0.6837 21 1 8.9967 -13.3608 -0.1513 22 1 10.2793 -12.4960 -2.0189 23 1 10.8137 -11.8040 0.2430 24 6 7.0628 -7.9475 1.1220 25 6 7.7850 -6.6100 1.3198 26 7 4.5192 -2.2041 -0.0008 27 1 4.3284 -3.1551 -0.0004 28 6 3.5808 -1.1994 0.0006 29 6 2.1885 -1.1961 -0.0005 30 1 -0.3633 -0.0003 1.0276 31 1 -0.3634 0.8902 -0.5136 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6445 2.1365 0.0006 34 1 4.0851 2.1728 -0.0100 35 1 6.4694 0.4289 -0.0015 36 1 6.1984 -4.2069 -0.0017 37 1 8.8775 -4.2058 -0.8946 38 1 8.8799 -4.2054 0.8854 39 1 8.2098 -5.9777 -2.0349 40 1 6.7397 -8.1558 -1.7609 41 1 8.4830 -8.4773 -1.9342 42 1 7.9756 -11.1772 -2.7008 43 1 6.0180 -7.7724 0.8654 44 1 7.1249 -8.5375 2.0364 45 1 8.7414 -6.7822 1.8135 46 1 7.1719 -5.9603 1.9445 47 1 1.6448 -2.1292 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001008127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:08 Heat of formation + Delta-G solvation = 54.578576 kcal Electronic energy + Delta-G solvation = -27762.371412 eV Core-core repulsion = 23910.970345 eV Total energy + Delta-G solvation = -3851.401067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.82746 -39.59774 -37.90927 -37.40180 -35.12361 -33.17668 -32.79164 -31.18625 -30.79281 -29.86513 -29.66193 -27.62952 -26.41219 -24.48601 -23.24854 -22.80264 -22.17756 -21.24217 -21.08030 -20.21512 -18.82694 -17.70873 -17.05880 -16.34763 -15.81715 -15.73185 -15.57366 -15.20458 -15.04429 -14.58286 -14.33774 -14.11926 -13.91398 -13.78904 -13.73070 -13.55405 -13.48218 -13.00997 -12.96873 -12.46217 -12.35213 -12.14904 -11.99510 -11.65664 -11.52084 -11.44341 -11.19593 -10.98361 -10.78278 -10.53564 -10.40076 -10.28773 -10.07476 -9.90477 -9.69395 -9.19112 -8.76000 -8.46982 -8.17036 -7.99312 -6.82761 -5.87008 -3.25974 0.50715 1.33568 1.87417 2.42603 2.64573 3.18792 3.32919 3.33932 3.40747 3.43061 3.58700 4.36099 4.43460 4.55117 4.58139 4.79291 4.90349 5.01327 5.06625 5.13403 5.25284 5.28083 5.32163 5.33060 5.41121 5.49054 5.55931 5.68485 5.71590 5.81037 5.83232 5.96728 6.05880 6.16077 6.20260 6.22456 6.28564 6.37540 6.41207 6.42173 6.63473 6.76884 6.79205 7.05564 7.07982 7.15481 7.22154 7.38943 7.64286 7.73948 7.98812 8.30438 9.11948 9.74588 10.32071 11.23533 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019837 B = 0.002004 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.174861 B =13970.229321 C =14871.196449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.057 4.057 3 C -0.149 4.149 4 C -0.057 4.057 5 C -0.124 4.124 6 C -0.108 4.108 7 C 0.019 3.981 8 C 0.579 3.421 9 O -0.526 6.526 10 N -0.717 5.717 11 C 0.157 3.843 12 C -0.170 4.170 13 C -0.121 4.121 14 C 0.193 3.807 15 N -0.595 5.595 16 C -0.247 4.247 17 H 0.069 0.931 18 C -0.001 4.001 19 N -0.910 5.910 20 Si 0.905 3.095 21 H -0.287 1.287 22 H -0.289 1.289 23 H -0.279 1.279 24 C 0.144 3.856 25 C -0.090 4.090 26 N -0.578 5.578 27 H 0.419 0.581 28 C 0.118 3.882 29 C -0.134 4.134 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.155 0.845 36 H 0.397 0.603 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.095 0.905 40 H 0.042 0.958 41 H 0.094 0.906 42 H 0.254 0.746 43 H 0.022 0.978 44 H 0.058 0.942 45 H 0.066 0.934 46 H 0.051 0.949 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.491 21.783 3.484 25.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.059 4.059 3 C -0.168 4.168 4 C -0.076 4.076 5 C -0.129 4.129 6 C -0.135 4.135 7 C -0.090 4.090 8 C 0.365 3.635 9 O -0.403 6.403 10 N -0.367 5.367 11 C 0.035 3.965 12 C -0.170 4.170 13 C -0.142 4.142 14 C 0.068 3.932 15 N -0.318 5.318 16 C -0.376 4.376 17 H 0.087 0.913 18 C -0.199 4.199 19 N -0.555 5.555 20 Si 0.735 3.265 21 H -0.214 1.214 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.017 3.983 25 C -0.129 4.129 26 N -0.182 5.182 27 H 0.257 0.743 28 C 0.007 3.993 29 C -0.155 4.155 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.173 0.827 36 H 0.230 0.770 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.113 0.887 40 H 0.059 0.941 41 H 0.112 0.888 42 H 0.065 0.935 43 H 0.040 0.960 44 H 0.076 0.924 45 H 0.084 0.916 46 H 0.070 0.930 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.616 21.896 3.340 25.010 hybrid contribution 0.158 -1.508 -0.085 1.519 sum -11.458 20.388 3.255 23.612 Atomic orbital electron populations 1.20800 0.90879 1.02907 1.02448 1.19615 0.95849 0.92215 0.98172 1.20525 0.93923 0.97404 1.04931 1.20390 0.93657 0.96253 0.97279 1.18202 0.93037 0.92925 1.08740 1.20897 0.95411 0.93180 1.04017 1.20223 0.84027 0.93435 1.11339 1.17243 0.87123 0.81999 0.77160 1.90847 1.30670 1.68547 1.50207 1.46119 1.10609 1.05471 1.74491 1.20537 0.84438 0.89199 1.02288 1.20494 1.07575 0.92661 0.96313 1.23327 0.94753 0.99994 0.96122 1.19775 1.00500 0.84608 0.88297 1.44124 1.62996 1.20100 1.04579 1.19165 1.30488 0.92396 0.95586 0.91339 1.24997 0.99708 0.97840 0.97366 1.70000 1.41557 1.38910 1.05033 0.86250 0.81040 0.82251 0.76978 1.21398 1.21525 1.20492 1.20987 0.93554 0.91172 0.92558 1.20796 1.00871 0.97789 0.93484 1.41972 1.04094 1.08215 1.63936 0.74286 1.18290 0.90778 0.87646 1.02537 1.19915 0.89720 0.98492 1.07385 0.91011 0.91334 0.91486 0.85910 0.85684 0.82695 0.76951 0.91224 0.91133 0.88696 0.94055 0.88763 0.93549 0.95984 0.92387 0.91566 0.93005 0.85923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 9.99 36.00 0.36 -0.26 16 2 C -0.06 -0.46 5.88 -104.57 -0.61 -1.07 16 3 C -0.15 -1.18 9.61 -39.97 -0.38 -1.57 16 4 C -0.06 -0.51 10.06 -39.53 -0.40 -0.91 16 5 C -0.12 -1.36 6.16 -106.93 -0.66 -2.02 16 6 C -0.11 -1.27 10.53 -39.16 -0.41 -1.68 16 7 C 0.02 0.23 6.97 -82.29 -0.57 -0.35 16 8 C 0.58 7.94 7.80 -12.68 -0.10 7.84 16 9 O -0.53 -8.91 16.84 5.23 0.09 -8.82 16 10 N -0.72 -8.95 5.54 -62.68 -0.35 -9.30 16 11 C 0.16 2.25 5.66 -5.19 -0.03 2.22 16 12 C -0.17 -2.76 5.22 -100.99 -0.53 -3.28 16 13 C -0.12 -2.20 9.47 -35.78 -0.34 -2.53 16 14 C 0.19 4.40 5.23 -5.10 -0.03 4.37 16 15 N -0.59 -14.35 3.01 -173.56 -0.52 -14.88 16 16 C -0.25 -6.61 9.71 -15.06 -0.15 -6.75 16 17 H 0.07 1.80 7.88 -52.49 -0.41 1.38 16 18 C 0.00 -0.03 5.01 -17.43 -0.09 -0.12 16 19 N -0.91 -25.64 11.08 55.49 0.61 -25.03 16 20 Si 0.91 21.36 29.58 -169.99 -5.03 16.33 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 24 C 0.14 2.83 6.59 -3.43 -0.02 2.81 16 25 C -0.09 -1.49 5.95 -28.09 -0.17 -1.66 16 26 N -0.58 -5.70 6.07 -7.35 -0.04 -5.75 16 27 H 0.42 3.15 8.12 -40.82 -0.33 2.82 16 28 C 0.12 1.23 7.25 -83.98 -0.61 0.62 16 29 C -0.13 -1.20 9.71 -39.42 -0.38 -1.58 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.30 8.08 -51.93 -0.42 -0.12 16 32 H 0.07 0.33 8.08 -51.93 -0.42 -0.09 16 33 H 0.12 0.70 8.06 -52.48 -0.42 0.28 16 34 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 35 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 36 H 0.40 4.20 7.52 -40.82 -0.31 3.90 16 37 H 0.07 1.03 7.78 -51.93 -0.40 0.62 16 38 H 0.07 1.03 8.11 -51.93 -0.42 0.60 16 39 H 0.10 1.55 7.73 -52.49 -0.41 1.14 16 40 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.09 2.42 6.41 -51.93 -0.33 2.08 16 42 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -31.51 389.15 -11.30 -42.81 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -6.81 Total: 4.67 kcal Atomic # 6 Polarization: -0.79 SS G_CDS: -5.12 Total: -5.91 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.30 Total: -54.95 kcal Atomic # 8 Polarization: -8.91 SS G_CDS: 0.09 Total: -8.82 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.03 Total: 16.33 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.51 -11.30 -42.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001008127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.390 kcal (2) G-P(sol) polarization free energy of solvation -31.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds