Wall clock time and date at job start Tue Mar 31 2020 22:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38938 * 119.67517 * 2 1 4 4 C 1.36445 * 120.61581 * 180.27229 * 3 2 1 5 5 C 1.40107 * 119.82528 * 359.50668 * 4 3 2 6 6 C 1.41586 * 133.37223 * 180.17545 * 5 4 3 7 7 C 1.35862 * 107.72495 * 180.28532 * 6 5 4 8 8 C 1.47062 * 125.43181 * 179.97438 * 7 6 5 9 9 O 1.21652 * 119.99730 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00033 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99677 * 179.97438 * 10 8 7 12 12 C 1.50709 * 109.46817 * 180.02562 * 11 10 8 13 13 C 1.29447 * 117.69397 * 95.00338 * 12 11 10 14 14 C 1.50322 * 123.65138 * 180.86045 * 13 12 11 15 15 N 1.47009 * 109.16601 * 349.01679 * 14 13 12 16 16 C 1.36934 * 121.37871 * 222.97454 * 15 14 13 17 17 H 1.07993 * 120.00389 * 155.97015 * 16 15 14 18 18 C 1.38810 * 119.99703 * 335.96939 * 16 15 14 19 19 N 1.31622 * 120.00314 * 344.51763 * 18 16 15 20 20 Si 1.86801 * 120.00063 * 164.52275 * 18 16 15 21 21 H 1.48496 * 109.47287 * 89.99816 * 20 18 16 22 22 H 1.48508 * 109.47007 * 210.00118 * 20 18 16 23 23 H 1.48502 * 109.46822 * 329.99406 * 20 18 16 24 24 C 1.47339 * 117.24770 * 42.95101 * 15 14 13 25 25 C 1.49967 * 117.69307 * 274.74154 * 12 11 10 26 26 N 1.38155 * 109.14034 * 359.97438 * 7 6 5 27 27 H 0.96995 * 125.60621 * 180.02562 * 26 7 6 28 28 C 1.37483 * 108.78444 * 359.97438 * 26 7 6 29 29 C 1.37670 * 119.67483 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47207 * 269.98130 * 1 2 3 31 31 H 1.09006 * 109.47445 * 29.98432 * 1 2 3 32 32 H 1.09002 * 109.47417 * 149.98120 * 1 2 3 33 33 H 1.08007 * 119.69373 * 0.03546 * 3 2 1 34 34 H 1.07997 * 120.08831 * 179.72565 * 4 3 2 35 35 H 1.07998 * 126.13683 * 0.28304 * 6 5 4 36 36 H 0.96995 * 120.00160 * 0.02562 * 10 8 7 37 37 H 1.08997 * 109.47416 * 299.99928 * 11 10 8 38 38 H 1.09000 * 109.46884 * 60.00949 * 11 10 8 39 39 H 1.07995 * 118.17586 * 0.87877 * 13 12 11 40 40 H 1.08999 * 109.52819 * 108.92634 * 14 13 12 41 41 H 1.09006 * 109.52139 * 229.11927 * 14 13 12 42 42 H 0.97003 * 120.00309 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.77739 * 57.80577 * 24 15 14 44 44 H 1.08998 * 109.78039 * 178.61883 * 24 15 14 45 45 H 1.09005 * 109.31636 * 281.29010 * 25 12 11 46 46 H 1.08998 * 109.31826 * 40.71574 * 25 12 11 47 47 H 1.07996 * 120.09368 * 359.95374 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1948 1.2072 0.0000 4 6 3.5591 1.2296 -0.0056 5 6 4.2758 0.0257 -0.0009 6 6 5.6575 -0.2833 -0.0013 7 6 5.7787 -1.6365 -0.0016 8 6 7.0483 -2.3787 -0.0026 9 8 8.1051 -1.7761 -0.0037 10 7 7.0410 -3.7264 -0.0022 11 6 8.3058 -4.4658 -0.0038 12 6 8.0223 -5.9459 -0.0037 13 6 8.0060 -6.5555 -1.1456 14 6 7.7197 -8.0228 -1.3025 15 7 7.7335 -8.6616 0.0214 16 6 8.3449 -9.8701 0.2237 17 1 8.6887 -10.1429 1.2104 18 6 8.5227 -10.7444 -0.8397 19 7 7.8517 -10.5659 -1.9579 20 14 9.7141 -12.1747 -0.6837 21 1 8.9967 -13.3608 -0.1513 22 1 10.2793 -12.4960 -2.0189 23 1 10.8137 -11.8040 0.2430 24 6 7.0628 -7.9475 1.1220 25 6 7.7850 -6.6100 1.3198 26 7 4.5192 -2.2041 -0.0008 27 1 4.3284 -3.1551 -0.0004 28 6 3.5808 -1.1994 0.0006 29 6 2.1885 -1.1961 -0.0005 30 1 -0.3633 -0.0003 1.0276 31 1 -0.3634 0.8902 -0.5136 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6445 2.1365 0.0006 34 1 4.0851 2.1728 -0.0100 35 1 6.4694 0.4289 -0.0015 36 1 6.1984 -4.2069 -0.0017 37 1 8.8775 -4.2058 -0.8946 38 1 8.8799 -4.2054 0.8854 39 1 8.2098 -5.9777 -2.0349 40 1 6.7397 -8.1558 -1.7609 41 1 8.4830 -8.4773 -1.9342 42 1 7.9756 -11.1772 -2.7008 43 1 6.0180 -7.7724 0.8654 44 1 7.1249 -8.5375 2.0364 45 1 8.7414 -6.7822 1.8135 46 1 7.1719 -5.9603 1.9445 47 1 1.6448 -2.1292 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001008127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:07 Heat of formation + Delta-G solvation = 36.675500 kcal Electronic energy + Delta-G solvation = -27763.147747 eV Core-core repulsion = 23910.970345 eV Total energy + Delta-G solvation = -3852.177402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.61134 -40.67985 -39.36632 -38.15052 -36.53882 -34.66410 -33.60520 -32.71990 -31.67789 -31.42616 -30.43508 -28.90575 -27.45146 -25.94543 -24.51399 -24.02677 -23.08594 -22.73651 -21.84893 -21.17163 -19.78568 -19.42609 -17.88362 -17.57626 -17.18818 -16.91990 -16.60867 -16.58084 -15.96511 -15.68440 -15.57773 -15.27922 -15.23740 -14.96640 -14.75766 -14.54734 -14.49352 -14.11208 -13.98570 -13.68524 -13.64195 -13.30248 -12.97238 -12.90397 -12.82278 -12.60582 -12.57809 -12.27282 -12.15119 -12.12498 -11.81244 -11.73907 -11.51663 -11.27400 -10.82980 -10.70751 -10.30278 -9.71652 -9.18303 -8.77427 -8.72867 -7.90896 -5.31814 -0.27389 0.65751 1.03175 1.08942 1.45263 1.47377 1.56353 1.86206 2.21434 2.22536 2.49375 2.90248 3.26595 3.56612 3.62825 3.73249 3.82836 3.92610 4.01102 4.13539 4.31012 4.38733 4.39302 4.48251 4.50105 4.57892 4.67919 4.72627 4.79758 4.84922 4.87732 4.91097 4.95377 5.03291 5.05876 5.15156 5.19533 5.30881 5.36332 5.45011 5.47733 5.55218 5.59473 5.65834 5.72162 5.74653 6.11428 6.11955 6.29985 6.31706 6.46296 6.94395 7.11319 7.81235 8.34490 9.17648 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019837 B = 0.002004 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.174861 B =13970.229321 C =14871.196449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.055 4.055 3 C -0.150 4.150 4 C -0.066 4.066 5 C -0.149 4.149 6 C -0.114 4.114 7 C 0.003 3.997 8 C 0.584 3.416 9 O -0.563 6.563 10 N -0.707 5.707 11 C 0.167 3.833 12 C -0.141 4.141 13 C -0.139 4.139 14 C 0.204 3.796 15 N -0.615 5.615 16 C -0.256 4.256 17 H 0.070 0.930 18 C -0.055 4.055 19 N -0.939 5.939 20 Si 0.967 3.033 21 H -0.284 1.284 22 H -0.294 1.294 23 H -0.272 1.272 24 C 0.138 3.862 25 C -0.084 4.084 26 N -0.570 5.570 27 H 0.428 0.572 28 C 0.108 3.892 29 C -0.148 4.148 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.156 0.844 36 H 0.408 0.592 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.016 0.984 41 H 0.057 0.943 42 H 0.250 0.750 43 H 0.029 0.971 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.878 23.484 4.689 27.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.057 4.057 3 C -0.169 4.169 4 C -0.084 4.084 5 C -0.153 4.153 6 C -0.141 4.141 7 C -0.106 4.106 8 C 0.372 3.628 9 O -0.442 6.442 10 N -0.357 5.357 11 C 0.044 3.956 12 C -0.142 4.142 13 C -0.159 4.159 14 C 0.079 3.921 15 N -0.339 5.339 16 C -0.386 4.386 17 H 0.088 0.912 18 C -0.249 4.249 19 N -0.586 5.586 20 Si 0.795 3.205 21 H -0.211 1.211 22 H -0.220 1.220 23 H -0.197 1.197 24 C 0.013 3.987 25 C -0.123 4.123 26 N -0.175 5.175 27 H 0.268 0.732 28 C -0.002 4.002 29 C -0.169 4.169 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.173 0.827 36 H 0.244 0.756 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.131 0.869 40 H 0.033 0.967 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.077 0.923 45 H 0.083 0.917 46 H 0.105 0.895 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -13.037 23.590 4.573 27.338 hybrid contribution 0.443 -1.927 -0.385 2.014 sum -12.594 21.664 4.188 25.406 Atomic orbital electron populations 1.20865 0.88889 1.03884 1.03319 1.20035 0.97366 0.91932 0.96369 1.20886 0.93702 0.98549 1.03753 1.20678 0.94328 0.96365 0.97048 1.18437 0.92791 0.94073 1.10006 1.21062 0.96108 0.93320 1.03615 1.19919 0.84020 0.93442 1.13247 1.17374 0.87240 0.81982 0.76245 1.90826 1.32075 1.69230 1.52056 1.45904 1.10523 1.05192 1.74084 1.20335 0.85169 0.87537 1.02538 1.20586 1.04446 0.93656 0.95495 1.22984 0.97689 0.97360 0.97864 1.19415 0.98094 0.87265 0.87322 1.44404 1.63583 1.19968 1.05951 1.19490 1.30192 0.93334 0.95616 0.91219 1.25734 1.01422 1.00473 0.97321 1.70156 1.43012 1.39820 1.05569 0.85280 0.79167 0.79441 0.76595 1.21103 1.22000 1.19719 1.21183 0.93984 0.92326 0.91187 1.20732 1.01002 0.96543 0.94029 1.41868 1.03296 1.08703 1.63653 0.73180 1.18576 0.91484 0.87602 1.02579 1.20193 0.89171 0.99714 1.07796 0.90044 0.90052 0.90902 0.83437 0.84070 0.82663 0.75639 0.91405 0.90653 0.86893 0.96666 0.92468 0.94113 0.95268 0.92264 0.91718 0.89475 0.84405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.99 71.23 0.71 -0.17 16 2 C -0.06 -0.75 5.88 -19.83 -0.12 -0.87 16 3 C -0.15 -2.01 9.61 22.02 0.21 -1.80 16 4 C -0.07 -1.07 10.06 22.30 0.22 -0.85 16 5 C -0.15 -3.12 6.16 -21.36 -0.13 -3.25 16 6 C -0.11 -2.62 10.53 22.54 0.24 -2.39 16 7 C 0.00 0.07 6.97 39.91 0.28 0.35 16 8 C 0.58 15.48 7.80 86.56 0.68 16.15 16 9 O -0.56 -18.81 16.84 -4.20 -0.07 -18.88 16 10 N -0.71 -16.39 5.54 -470.44 -2.61 -19.00 16 11 C 0.17 4.43 5.66 85.64 0.48 4.92 16 12 C -0.14 -4.34 5.22 -15.13 -0.08 -4.42 16 13 C -0.14 -4.96 9.47 27.11 0.26 -4.71 16 14 C 0.20 9.58 5.23 85.42 0.45 10.02 16 15 N -0.62 -29.98 3.01 -703.02 -2.11 -32.09 16 16 C -0.26 -13.86 9.71 84.03 0.82 -13.04 16 17 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 18 C -0.05 -3.02 5.01 84.86 0.43 -2.59 16 19 N -0.94 -54.64 11.08 21.65 0.24 -54.40 16 20 Si 0.97 44.58 29.58 68.60 2.03 46.61 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 22 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 24 C 0.14 5.30 6.59 86.32 0.57 5.87 16 25 C -0.08 -2.59 5.95 29.72 0.18 -2.42 16 26 N -0.57 -10.60 6.07 -177.18 -1.08 -11.67 16 27 H 0.43 5.82 8.12 -92.71 -0.75 5.06 16 28 C 0.11 2.13 7.25 39.13 0.28 2.41 16 29 C -0.15 -2.35 9.71 22.37 0.22 -2.13 16 30 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.08 0.44 8.08 -2.38 -0.02 0.42 16 32 H 0.07 0.50 8.08 -2.39 -0.02 0.48 16 33 H 0.15 1.18 8.06 -2.91 -0.02 1.16 16 34 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 35 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 36 H 0.41 7.76 7.52 -92.71 -0.70 7.06 16 37 H 0.07 1.89 7.78 -2.39 -0.02 1.87 16 38 H 0.08 2.00 8.11 -2.39 -0.02 1.99 16 39 H 0.11 3.62 7.73 -2.91 -0.02 3.60 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 3.07 6.41 -2.38 -0.02 3.06 16 42 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 43 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 2.22 7.96 -2.39 -0.02 2.20 16 45 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 46 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 47 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 Total: -1.00 -69.33 389.15 1.64 -67.69 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -0.45 Total: 20.63 kcal Atomic # 6 Polarization: -4.58 SS G_CDS: 5.69 Total: 1.11 kcal Atomic # 7 Polarization: -111.60 SS G_CDS: -5.56 Total: -117.16 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.07 Total: -18.88 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -69.33 1.64 -67.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001008127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.369 kcal (2) G-P(sol) polarization free energy of solvation -69.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds