Wall clock time and date at job start Tue Mar 31 2020 22:19:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38941 * 119.69319 * 2 1 4 4 C 1.37667 * 120.65377 * 179.74300 * 3 2 1 5 5 C 1.39230 * 119.80637 * 0.26298 * 4 3 2 6 6 N 1.37488 * 133.17941 * 179.97438 * 5 4 3 7 7 H 0.97000 * 125.60787 * 359.97438 * 6 5 4 8 8 C 1.38148 * 108.78796 * 180.02562 * 6 5 4 9 9 C 1.47054 * 125.43352 * 179.97438 * 8 6 5 10 10 O 1.21649 * 120.00592 * 180.02562 * 9 8 6 11 11 N 1.34778 * 119.99700 * 0.02562 * 9 8 6 12 12 C 1.46500 * 120.00235 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47455 * 180.02562 * 12 11 9 14 14 C 1.29449 * 117.69421 * 94.99634 * 13 12 11 15 15 C 1.50326 * 123.64686 * 180.85913 * 14 13 12 16 16 N 1.47000 * 109.16790 * 349.02389 * 15 14 13 17 17 C 1.36943 * 121.37629 * 222.97374 * 16 15 14 18 18 H 1.07997 * 119.99966 * 155.98052 * 17 16 15 19 19 C 1.38817 * 119.99568 * 335.97393 * 17 16 15 20 20 N 1.31620 * 120.00159 * 344.49760 * 19 17 16 21 21 Si 1.86803 * 119.99804 * 164.49921 * 19 17 16 22 22 H 1.48496 * 109.46967 * 94.45351 * 21 19 17 23 23 H 1.48494 * 109.47051 * 214.45305 * 21 19 17 24 24 H 1.48496 * 109.46873 * 334.45556 * 21 19 17 25 25 C 1.47335 * 117.25292 * 42.94430 * 16 15 14 26 26 C 1.49966 * 117.68982 * 274.74089 * 13 12 11 27 27 C 1.35872 * 109.13820 * 359.97438 * 8 6 5 28 28 C 1.40844 * 119.43200 * 359.97438 * 5 4 3 29 29 C 1.36442 * 119.69406 * 180.24415 * 2 1 3 30 30 H 1.08999 * 109.47123 * 90.00090 * 1 2 3 31 31 H 1.09000 * 109.46988 * 209.99582 * 1 2 3 32 32 H 1.08994 * 109.47328 * 329.99897 * 1 2 3 33 33 H 1.07999 * 119.67193 * 0.02562 * 3 2 1 34 34 H 1.07995 * 120.10084 * 180.23006 * 4 3 2 35 35 H 0.97006 * 120.00341 * 359.97438 * 11 9 8 36 36 H 1.09004 * 109.46966 * 300.00022 * 12 11 9 37 37 H 1.09002 * 109.47201 * 59.99842 * 12 11 9 38 38 H 1.07999 * 118.17789 * 0.88410 * 14 13 12 39 39 H 1.08996 * 109.51949 * 108.93337 * 15 14 13 40 40 H 1.09006 * 109.51791 * 229.11976 * 15 14 13 41 41 H 0.96994 * 119.99651 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.77576 * 57.81241 * 25 16 15 43 43 H 1.08995 * 109.78165 * 178.61608 * 25 16 15 44 44 H 1.09011 * 109.31468 * 281.28622 * 26 13 12 45 45 H 1.08997 * 109.31926 * 40.71262 * 26 13 12 46 46 H 1.08005 * 126.13734 * 180.02562 * 27 8 6 47 47 H 1.08003 * 120.08714 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2070 0.0000 4 6 3.5717 1.2301 0.0053 5 6 4.2839 0.0337 0.0052 6 7 5.6266 -0.2618 0.0092 7 1 6.3477 0.3870 0.0127 8 6 5.7801 -1.6347 0.0062 9 6 7.0655 -2.3490 0.0084 10 8 7.0856 -3.5653 0.0049 11 7 8.2214 -1.6559 0.0142 12 6 9.5021 -2.3673 0.0158 13 6 10.6312 -1.3693 0.0232 14 6 11.1443 -1.0499 1.1679 15 6 12.2606 -0.0565 1.3323 16 7 12.8206 0.2631 0.0112 17 6 14.1726 0.3538 -0.1871 18 1 14.5851 0.2016 -1.1735 19 6 15.0128 0.6414 0.8799 20 7 14.5144 1.1229 1.9988 21 14 16.8509 0.3450 0.7275 22 1 17.5214 1.6010 0.3053 23 1 17.3929 -0.0884 2.0403 24 1 17.0994 -0.7130 -0.2844 25 6 11.8674 0.4813 -1.0908 26 6 11.0850 -0.8207 -1.2967 27 6 4.5539 -2.2200 0.0009 28 6 3.5839 -1.1885 0.0002 29 6 2.1828 -1.1852 -0.0051 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6449 2.1362 0.0004 34 1 4.0975 2.1733 0.0090 35 1 8.2055 -0.6860 0.0166 36 1 9.5674 -2.9959 0.9039 37 1 9.5729 -2.9900 -0.8760 38 1 10.7488 -1.5237 2.0541 39 1 11.8744 0.8523 1.7938 40 1 13.0390 -0.4846 1.9640 41 1 15.1015 1.3242 2.7441 42 1 11.1837 1.2899 -0.8324 43 1 12.4091 0.7327 -2.0027 44 1 11.7219 -1.5537 -1.7921 45 1 10.2153 -0.6214 -1.9226 46 1 4.3548 -3.2815 -0.0020 47 1 1.6393 -2.1185 -0.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001001030977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:48 Heat of formation + Delta-G solvation = 54.730220 kcal Electronic energy + Delta-G solvation = -27723.049362 eV Core-core repulsion = 23871.654871 eV Total energy + Delta-G solvation = -3851.394491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.83254 -39.60331 -37.91335 -37.42341 -35.12515 -33.06508 -32.56068 -31.72708 -30.94240 -29.84323 -29.27428 -27.45300 -26.45335 -24.65533 -23.43722 -22.80323 -22.04497 -21.25950 -20.93710 -20.23528 -18.83668 -17.73520 -17.39012 -16.18133 -15.85001 -15.63388 -15.38348 -15.21248 -15.03765 -14.57042 -14.38193 -14.07948 -13.91570 -13.79617 -13.77648 -13.56412 -13.47665 -13.12163 -13.01184 -12.44796 -12.35460 -12.14912 -11.93830 -11.65750 -11.48872 -11.39799 -11.18325 -10.98536 -10.78645 -10.53784 -10.39622 -10.29190 -10.16172 -9.90467 -9.69463 -9.19926 -8.76119 -8.39473 -8.17193 -8.02969 -6.82794 -5.87133 -3.26049 0.51358 1.30012 1.89022 2.42263 2.64859 3.18493 3.32485 3.33656 3.40902 3.43222 3.57619 4.35134 4.43428 4.53777 4.62336 4.76859 4.91358 5.00847 5.07098 5.11853 5.25085 5.32096 5.32925 5.35663 5.40751 5.49613 5.58917 5.71256 5.75007 5.76789 5.82924 5.96512 6.05587 6.08730 6.19188 6.22365 6.30821 6.39017 6.41035 6.41983 6.63386 6.76751 6.78671 7.05338 7.07604 7.15343 7.21981 7.38426 7.64225 7.73914 7.98177 8.30374 9.11916 9.74540 10.31972 11.23446 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024147 B = 0.001922 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.291527 B =14561.259036 C =15210.084877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.118 4.118 3 C -0.088 4.088 4 C -0.128 4.128 5 C 0.109 3.891 6 N -0.577 5.577 7 H 0.419 0.581 8 C 0.022 3.978 9 C 0.579 3.421 10 O -0.526 6.526 11 N -0.716 5.716 12 C 0.157 3.843 13 C -0.170 4.170 14 C -0.121 4.121 15 C 0.193 3.807 16 N -0.595 5.595 17 C -0.247 4.247 18 H 0.069 0.931 19 C -0.001 4.001 20 N -0.910 5.910 21 Si 0.905 3.095 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.144 3.856 26 C -0.090 4.090 27 C -0.111 4.111 28 C -0.115 4.115 29 C -0.063 4.063 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.397 0.603 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.042 0.958 40 H 0.095 0.905 41 H 0.254 0.746 42 H 0.022 0.978 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.155 0.845 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.423 -1.103 -3.564 25.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.119 4.119 3 C -0.107 4.107 4 C -0.148 4.148 5 C -0.001 4.001 6 N -0.182 5.182 7 H 0.257 0.743 8 C -0.088 4.088 9 C 0.365 3.635 10 O -0.402 6.402 11 N -0.367 5.367 12 C 0.035 3.965 13 C -0.171 4.171 14 C -0.142 4.142 15 C 0.068 3.932 16 N -0.318 5.318 17 C -0.377 4.377 18 H 0.087 0.913 19 C -0.199 4.199 20 N -0.555 5.555 21 Si 0.735 3.265 22 H -0.215 1.215 23 H -0.215 1.215 24 H -0.204 1.204 25 C 0.017 3.983 26 C -0.129 4.129 27 C -0.138 4.138 28 C -0.120 4.120 29 C -0.081 4.081 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.231 0.769 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.059 0.941 40 H 0.112 0.888 41 H 0.064 0.936 42 H 0.040 0.960 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.173 0.827 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -25.080 -1.915 -3.423 25.384 hybrid contribution 1.407 0.693 0.094 1.571 sum -23.672 -1.222 -3.330 23.936 Atomic orbital electron populations 1.20724 0.91101 1.02607 1.02119 1.19379 0.96090 0.92802 1.03663 1.20761 0.92841 0.97666 0.99442 1.20083 0.93854 0.94960 1.05917 1.18331 0.82931 0.95591 1.03265 1.41976 1.06247 1.06081 1.63869 0.74273 1.20235 0.95276 0.82213 1.11058 1.17243 0.82196 0.86931 0.77180 1.90847 1.86771 1.12437 1.50172 1.46124 1.05853 1.10235 1.74470 1.20537 0.79989 0.93639 1.02297 1.20494 0.98737 1.01526 0.96315 1.23329 0.97641 0.97100 0.96098 1.19777 0.91942 0.93143 0.88339 1.44120 1.01864 1.81052 1.04738 1.19182 0.81335 1.41660 0.95487 0.91326 1.24995 0.98241 0.99310 0.97326 1.70001 1.34278 1.46379 1.04835 0.86234 0.85212 0.78018 0.77068 1.21460 1.21524 1.20433 1.20986 0.91974 0.92785 0.92533 1.20796 0.98842 0.99785 0.93515 1.20895 0.89219 0.99356 1.04306 1.18179 0.93598 0.92253 1.07950 1.20253 0.91420 0.97886 0.98576 0.91483 0.91703 0.91733 0.85576 0.85818 0.76944 0.91217 0.91134 0.88695 0.94051 0.88757 0.93562 0.95987 0.92385 0.91565 0.93006 0.82689 0.85791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.60 9.99 36.00 0.36 -0.24 16 2 C -0.12 -0.95 5.84 -105.01 -0.61 -1.57 16 3 C -0.09 -0.68 9.66 -39.53 -0.38 -1.07 16 4 C -0.13 -1.10 10.08 -39.42 -0.40 -1.50 16 5 C 0.11 1.13 7.25 -83.97 -0.61 0.52 16 6 N -0.58 -5.65 6.07 -7.36 -0.04 -5.69 16 7 H 0.42 3.11 8.12 -40.82 -0.33 2.78 16 8 C 0.02 0.26 6.97 -82.29 -0.57 -0.31 16 9 C 0.58 7.91 7.80 -12.69 -0.10 7.81 16 10 O -0.53 -8.88 16.84 5.23 0.09 -8.79 16 11 N -0.72 -8.91 5.54 -62.68 -0.35 -9.26 16 12 C 0.16 2.24 5.66 -5.19 -0.03 2.21 16 13 C -0.17 -2.76 5.22 -100.99 -0.53 -3.28 16 14 C -0.12 -2.19 9.47 -35.78 -0.34 -2.52 16 15 C 0.19 4.39 5.23 -5.10 -0.03 4.36 16 16 N -0.59 -14.33 3.01 -173.57 -0.52 -14.85 16 17 C -0.25 -6.61 9.71 -15.05 -0.15 -6.76 16 18 H 0.07 1.80 7.88 -52.49 -0.41 1.39 16 19 C 0.00 -0.02 5.01 -17.43 -0.09 -0.11 16 20 N -0.91 -25.62 11.08 55.49 0.61 -25.00 16 21 Si 0.90 21.34 29.58 -169.99 -5.03 16.31 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C 0.14 2.83 6.59 -3.44 -0.02 2.80 16 26 C -0.09 -1.49 5.95 -28.09 -0.17 -1.66 16 27 C -0.11 -1.30 10.53 -39.15 -0.41 -1.71 16 28 C -0.12 -1.26 6.16 -106.93 -0.66 -1.92 16 29 C -0.06 -0.57 9.68 -39.53 -0.38 -0.96 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.31 8.08 -51.93 -0.42 -0.10 16 32 H 0.06 0.29 8.08 -51.93 -0.42 -0.13 16 33 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 35 H 0.40 4.18 7.52 -40.82 -0.31 3.87 16 36 H 0.07 1.03 7.78 -51.93 -0.40 0.62 16 37 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 38 H 0.10 1.54 7.73 -52.49 -0.41 1.14 16 39 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 2.42 6.41 -51.93 -0.33 2.08 16 41 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 42 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 44 H 0.07 1.14 8.14 -51.92 -0.42 0.72 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.16 1.68 8.06 -52.48 -0.42 1.25 16 47 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 389.15 15.07 5.86 5.86 Total: -1.00 -31.46 389.15 -11.30 -42.76 By element: Atomic # 1 Polarization: 11.36 SS G_CDS: -6.81 Total: 4.55 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -5.11 Total: -5.89 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.30 Total: -54.80 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.46 -11.30 -42.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001030977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.488 kcal (2) G-P(sol) polarization free energy of solvation -31.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds