Wall clock time and date at job start Tue Mar 31 2020 22:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38941 * 119.69319 * 2 1 4 4 C 1.37667 * 120.65377 * 179.74300 * 3 2 1 5 5 C 1.39230 * 119.80637 * 0.26298 * 4 3 2 6 6 N 1.37488 * 133.17941 * 179.97438 * 5 4 3 7 7 H 0.97000 * 125.60787 * 359.97438 * 6 5 4 8 8 C 1.38148 * 108.78796 * 180.02562 * 6 5 4 9 9 C 1.47054 * 125.43352 * 179.97438 * 8 6 5 10 10 O 1.21649 * 120.00592 * 180.02562 * 9 8 6 11 11 N 1.34778 * 119.99700 * 0.02562 * 9 8 6 12 12 C 1.46500 * 120.00235 * 180.02562 * 11 9 8 13 13 C 1.50700 * 109.47455 * 180.02562 * 12 11 9 14 14 C 1.29449 * 117.69421 * 94.99634 * 13 12 11 15 15 C 1.50326 * 123.64686 * 180.85913 * 14 13 12 16 16 N 1.47000 * 109.16790 * 349.02389 * 15 14 13 17 17 C 1.36943 * 121.37629 * 222.97374 * 16 15 14 18 18 H 1.07997 * 119.99966 * 155.98052 * 17 16 15 19 19 C 1.38817 * 119.99568 * 335.97393 * 17 16 15 20 20 N 1.31620 * 120.00159 * 344.49760 * 19 17 16 21 21 Si 1.86803 * 119.99804 * 164.49921 * 19 17 16 22 22 H 1.48496 * 109.46967 * 94.45351 * 21 19 17 23 23 H 1.48494 * 109.47051 * 214.45305 * 21 19 17 24 24 H 1.48496 * 109.46873 * 334.45556 * 21 19 17 25 25 C 1.47335 * 117.25292 * 42.94430 * 16 15 14 26 26 C 1.49966 * 117.68982 * 274.74089 * 13 12 11 27 27 C 1.35872 * 109.13820 * 359.97438 * 8 6 5 28 28 C 1.40844 * 119.43200 * 359.97438 * 5 4 3 29 29 C 1.36442 * 119.69406 * 180.24415 * 2 1 3 30 30 H 1.08999 * 109.47123 * 90.00090 * 1 2 3 31 31 H 1.09000 * 109.46988 * 209.99582 * 1 2 3 32 32 H 1.08994 * 109.47328 * 329.99897 * 1 2 3 33 33 H 1.07999 * 119.67193 * 0.02562 * 3 2 1 34 34 H 1.07995 * 120.10084 * 180.23006 * 4 3 2 35 35 H 0.97006 * 120.00341 * 359.97438 * 11 9 8 36 36 H 1.09004 * 109.46966 * 300.00022 * 12 11 9 37 37 H 1.09002 * 109.47201 * 59.99842 * 12 11 9 38 38 H 1.07999 * 118.17789 * 0.88410 * 14 13 12 39 39 H 1.08996 * 109.51949 * 108.93337 * 15 14 13 40 40 H 1.09006 * 109.51791 * 229.11976 * 15 14 13 41 41 H 0.96994 * 119.99651 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.77576 * 57.81241 * 25 16 15 43 43 H 1.08995 * 109.78165 * 178.61608 * 25 16 15 44 44 H 1.09011 * 109.31468 * 281.28622 * 26 13 12 45 45 H 1.08997 * 109.31926 * 40.71262 * 26 13 12 46 46 H 1.08005 * 126.13734 * 180.02562 * 27 8 6 47 47 H 1.08003 * 120.08714 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1952 1.2070 0.0000 4 6 3.5717 1.2301 0.0053 5 6 4.2839 0.0337 0.0052 6 7 5.6266 -0.2618 0.0092 7 1 6.3477 0.3870 0.0127 8 6 5.7801 -1.6347 0.0062 9 6 7.0655 -2.3490 0.0084 10 8 7.0856 -3.5653 0.0049 11 7 8.2214 -1.6559 0.0142 12 6 9.5021 -2.3673 0.0158 13 6 10.6312 -1.3693 0.0232 14 6 11.1443 -1.0499 1.1679 15 6 12.2606 -0.0565 1.3323 16 7 12.8206 0.2631 0.0112 17 6 14.1726 0.3538 -0.1871 18 1 14.5851 0.2016 -1.1735 19 6 15.0128 0.6414 0.8799 20 7 14.5144 1.1229 1.9988 21 14 16.8509 0.3450 0.7275 22 1 17.5214 1.6010 0.3053 23 1 17.3929 -0.0884 2.0403 24 1 17.0994 -0.7130 -0.2844 25 6 11.8674 0.4813 -1.0908 26 6 11.0850 -0.8207 -1.2967 27 6 4.5539 -2.2200 0.0009 28 6 3.5839 -1.1885 0.0002 29 6 2.1828 -1.1852 -0.0051 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6449 2.1362 0.0004 34 1 4.0975 2.1733 0.0090 35 1 8.2055 -0.6860 0.0166 36 1 9.5674 -2.9959 0.9039 37 1 9.5729 -2.9900 -0.8760 38 1 10.7488 -1.5237 2.0541 39 1 11.8744 0.8523 1.7938 40 1 13.0390 -0.4846 1.9640 41 1 15.1015 1.3242 2.7441 42 1 11.1837 1.2899 -0.8324 43 1 12.4091 0.7327 -2.0027 44 1 11.7219 -1.5537 -1.7921 45 1 10.2153 -0.6214 -1.9226 46 1 4.3548 -3.2815 -0.0020 47 1 1.6393 -2.1185 -0.0094 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001030977.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:47 Heat of formation + Delta-G solvation = 36.866527 kcal Electronic energy + Delta-G solvation = -27723.823990 eV Core-core repulsion = 23871.654871 eV Total energy + Delta-G solvation = -3852.169119 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.61388 -40.68265 -39.36554 -38.17027 -36.53873 -34.65219 -33.25713 -32.83433 -32.20072 -31.45666 -30.11948 -28.75236 -27.33399 -26.07576 -24.64329 -24.22429 -22.88696 -22.74062 -21.76627 -21.15250 -19.78624 -19.42727 -18.22302 -17.50876 -17.20641 -16.96878 -16.58417 -16.25861 -15.90692 -15.67474 -15.56490 -15.26838 -15.23417 -14.99414 -14.71795 -14.59620 -14.49479 -14.12291 -13.99028 -13.84475 -13.65219 -13.29952 -12.97198 -12.88969 -12.82328 -12.60713 -12.51304 -12.26402 -12.14477 -12.03925 -11.79747 -11.73640 -11.52034 -11.27238 -10.91210 -10.70707 -10.31181 -9.71482 -9.11912 -8.77137 -8.74840 -7.90798 -5.31624 -0.27037 0.62731 1.05214 1.08986 1.45318 1.47569 1.56793 1.86654 2.21365 2.22295 2.49562 2.89642 3.26831 3.56559 3.61954 3.73102 3.82784 3.92761 4.07931 4.09007 4.30973 4.37985 4.39363 4.49293 4.50312 4.59087 4.68776 4.71844 4.79730 4.83764 4.87995 4.94860 4.97529 5.05666 5.12686 5.16037 5.19705 5.25897 5.36593 5.43986 5.45265 5.53795 5.59740 5.64904 5.72536 5.78192 6.11508 6.11916 6.30021 6.31905 6.46498 6.94062 7.11579 7.81502 8.34675 9.17806 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024147 B = 0.001922 C = 0.001840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.291527 B =14561.259036 C =15210.084877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.120 4.120 3 C -0.086 4.086 4 C -0.136 4.136 5 C 0.098 3.902 6 N -0.568 5.568 7 H 0.429 0.571 8 C 0.007 3.993 9 C 0.584 3.416 10 O -0.563 6.563 11 N -0.706 5.706 12 C 0.167 3.833 13 C -0.141 4.141 14 C -0.138 4.138 15 C 0.204 3.796 16 N -0.615 5.615 17 C -0.257 4.257 18 H 0.070 0.930 19 C -0.054 4.054 20 N -0.939 5.939 21 Si 0.967 3.033 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.271 1.271 25 C 0.138 3.862 26 C -0.084 4.084 27 C -0.118 4.118 28 C -0.138 4.138 29 C -0.076 4.076 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.153 0.847 34 H 0.144 0.856 35 H 0.408 0.592 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.016 0.984 40 H 0.057 0.943 41 H 0.250 0.750 42 H 0.029 0.971 43 H 0.059 0.941 44 H 0.064 0.936 45 H 0.087 0.913 46 H 0.155 0.845 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.525 -0.663 -4.767 27.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.156 4.156 5 C -0.012 4.012 6 N -0.174 5.174 7 H 0.269 0.731 8 C -0.103 4.103 9 C 0.371 3.629 10 O -0.442 6.442 11 N -0.357 5.357 12 C 0.044 3.956 13 C -0.142 4.142 14 C -0.158 4.158 15 C 0.079 3.921 16 N -0.339 5.339 17 C -0.387 4.387 18 H 0.088 0.912 19 C -0.248 4.248 20 N -0.586 5.586 21 Si 0.795 3.205 22 H -0.213 1.213 23 H -0.220 1.220 24 H -0.196 1.196 25 C 0.013 3.987 26 C -0.123 4.123 27 C -0.146 4.146 28 C -0.142 4.142 29 C -0.095 4.095 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.171 0.829 34 H 0.161 0.839 35 H 0.244 0.756 36 H 0.086 0.914 37 H 0.093 0.907 38 H 0.131 0.869 39 H 0.034 0.966 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.047 0.953 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.105 0.895 46 H 0.172 0.828 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -27.194 -1.444 -4.654 27.628 hybrid contribution 1.898 0.622 0.393 2.035 sum -25.297 -0.821 -4.261 25.666 Atomic orbital electron populations 1.20776 0.89197 1.03557 1.02923 1.19754 0.97568 0.92504 1.02281 1.21174 0.92774 0.98729 0.97810 1.20398 0.94367 0.95131 1.05728 1.18627 0.83017 0.96159 1.03445 1.41867 1.06591 1.05411 1.63523 0.73106 1.19924 0.94340 0.83146 1.12854 1.17373 0.82747 0.86480 0.76267 1.90826 1.87298 1.14015 1.52015 1.45906 1.04978 1.10738 1.74048 1.20335 0.79774 0.92926 1.02545 1.20585 0.98036 1.00105 0.95494 1.22984 0.97261 0.97768 0.97833 1.19419 0.92194 0.93155 0.87375 1.44394 1.01909 1.81448 1.06103 1.19507 0.82985 1.40681 0.95514 0.91223 1.25723 1.02060 0.99797 0.97267 1.70155 1.35267 1.47766 1.05368 0.85268 0.80629 0.77880 0.76738 1.21251 1.21991 1.19608 1.21182 0.91623 0.94730 0.91157 1.20732 0.99673 0.97841 0.94058 1.21051 0.89703 0.99732 1.04086 1.18396 0.94455 0.92298 1.09066 1.20501 0.90947 0.99117 0.98946 0.90645 0.91170 0.90453 0.82937 0.83873 0.75609 0.91405 0.90657 0.86895 0.96647 0.92465 0.94117 0.95253 0.92271 0.91731 0.89464 0.82771 0.84650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.88 9.99 71.23 0.71 -0.17 16 2 C -0.12 -1.66 5.84 -20.12 -0.12 -1.78 16 3 C -0.09 -1.10 9.66 22.30 0.22 -0.88 16 4 C -0.14 -2.03 10.08 22.37 0.23 -1.80 16 5 C 0.10 1.89 7.25 39.13 0.28 2.17 16 6 N -0.57 -10.38 6.07 -177.18 -1.08 -11.46 16 7 H 0.43 5.62 8.12 -92.71 -0.75 4.87 16 8 C 0.01 0.17 6.97 39.91 0.28 0.45 16 9 C 0.58 15.41 7.80 86.56 0.68 16.09 16 10 O -0.56 -18.78 16.84 -4.18 -0.07 -18.85 16 11 N -0.71 -16.26 5.54 -470.45 -2.61 -18.87 16 12 C 0.17 4.41 5.66 85.63 0.48 4.90 16 13 C -0.14 -4.34 5.22 -15.13 -0.08 -4.41 16 14 C -0.14 -4.93 9.47 27.11 0.26 -4.67 16 15 C 0.20 9.53 5.23 85.42 0.45 9.98 16 16 N -0.61 -29.87 3.01 -703.04 -2.11 -31.99 16 17 C -0.26 -13.87 9.71 84.03 0.82 -13.06 16 18 H 0.07 3.66 7.88 -2.91 -0.02 3.63 16 19 C -0.05 -2.96 5.01 84.86 0.43 -2.53 16 20 N -0.94 -54.56 11.08 21.65 0.24 -54.32 16 21 Si 0.97 44.51 29.58 68.60 2.03 46.54 16 22 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 25 C 0.14 5.28 6.59 86.32 0.57 5.85 16 26 C -0.08 -2.58 5.95 29.71 0.18 -2.41 16 27 C -0.12 -2.75 10.53 22.55 0.24 -2.51 16 28 C -0.14 -2.91 6.16 -21.36 -0.13 -3.04 16 29 C -0.08 -1.30 9.68 22.31 0.22 -1.09 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.07 0.51 8.08 -2.39 -0.02 0.49 16 32 H 0.08 0.45 8.08 -2.39 -0.02 0.43 16 33 H 0.15 1.10 8.06 -2.91 -0.02 1.08 16 34 H 0.14 1.50 8.06 -2.91 -0.02 1.47 16 35 H 0.41 7.67 7.52 -92.70 -0.70 6.97 16 36 H 0.07 1.88 7.78 -2.38 -0.02 1.86 16 37 H 0.08 2.00 8.11 -2.39 -0.02 1.98 16 38 H 0.11 3.61 7.73 -2.91 -0.02 3.58 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.06 3.07 6.41 -2.38 -0.02 3.06 16 41 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 42 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 2.21 7.96 -2.39 -0.02 2.20 16 44 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 45 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 46 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 47 H 0.14 1.85 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -69.29 389.15 1.64 -67.64 By element: Atomic # 1 Polarization: 20.66 SS G_CDS: -0.45 Total: 20.21 kcal Atomic # 6 Polarization: -4.60 SS G_CDS: 5.69 Total: 1.08 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -5.56 Total: -116.63 kcal Atomic # 8 Polarization: -18.78 SS G_CDS: -0.07 Total: -18.85 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -69.29 1.64 -67.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001030977.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.511 kcal (2) G-P(sol) polarization free energy of solvation -69.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.644 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds