Wall clock time and date at job start Tue Mar 31 2020 22:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.35732 * 120.33396 * 2 1 4 4 C 1.40833 * 119.72263 * 180.02562 * 3 2 1 5 5 C 1.34540 * 120.57779 * 359.97438 * 4 3 2 6 6 N 1.37432 * 120.74581 * 0.03890 * 5 4 3 7 7 C 1.35131 * 131.28556 * 179.97438 * 6 5 4 8 8 C 1.38056 * 108.76807 * 179.97438 * 7 6 5 9 9 C 1.47504 * 126.37076 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00315 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99704 * 0.02562 * 9 8 7 12 12 C 1.46498 * 119.99996 * 180.02562 * 11 9 8 13 13 C 1.50698 * 109.47312 * 180.02562 * 12 11 9 14 14 C 1.29460 * 117.69667 * 94.99725 * 13 12 11 15 15 C 1.50324 * 123.65257 * 181.14156 * 14 13 12 16 16 N 1.47122 * 109.10054 * 348.53834 * 15 14 13 17 17 C 1.36943 * 121.53573 * 223.15756 * 16 15 14 18 18 H 1.07994 * 120.00029 * 156.23909 * 17 16 15 19 19 C 1.38816 * 119.99651 * 336.23681 * 17 16 15 20 20 N 1.31620 * 119.99998 * 344.48177 * 19 17 16 21 21 Si 1.86801 * 119.99831 * 164.48178 * 19 17 16 22 22 H 1.48492 * 109.47157 * 60.00093 * 21 19 17 23 23 H 1.48503 * 109.46921 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.46909 * 299.99543 * 21 19 17 25 25 C 1.47335 * 117.09210 * 43.38437 * 16 15 14 26 26 C 1.49964 * 117.69405 * 275.02064 * 13 12 11 27 27 C 1.41196 * 107.25862 * 0.25900 * 8 7 6 28 28 C 1.37954 * 119.81022 * 359.96088 * 6 5 4 29 29 H 1.09003 * 109.46767 * 269.97801 * 1 2 3 30 30 H 1.09004 * 109.46845 * 29.97430 * 1 2 3 31 31 H 1.08996 * 109.47295 * 149.97888 * 1 2 3 32 32 H 1.08003 * 120.14113 * 0.02562 * 3 2 1 33 33 H 1.07998 * 119.71186 * 179.97438 * 4 3 2 34 34 H 1.08000 * 119.62374 * 180.02562 * 5 4 3 35 35 H 1.07998 * 125.61201 * 0.02562 * 7 6 5 36 36 H 0.97001 * 120.00347 * 0.02562 * 11 9 8 37 37 H 1.08996 * 109.47191 * 59.99885 * 12 11 9 38 38 H 1.09004 * 109.47250 * 299.99845 * 12 11 9 39 39 H 1.08001 * 118.17174 * 0.86235 * 14 13 12 40 40 H 1.08996 * 109.52061 * 108.64573 * 15 14 13 41 41 H 1.09003 * 109.51767 * 228.83796 * 15 14 13 42 42 H 0.97003 * 119.99843 * 179.97438 * 20 19 17 43 43 H 1.08998 * 109.78168 * 178.39332 * 25 16 15 44 44 H 1.09002 * 109.77935 * 57.58413 * 25 16 15 45 45 H 1.09005 * 109.31203 * 281.28477 * 26 13 12 46 46 H 1.08995 * 109.31683 * 40.71451 * 26 13 12 47 47 H 1.08003 * 126.56707 * 179.70243 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1926 1.1715 0.0000 4 6 3.6008 1.1565 -0.0005 5 6 4.2729 -0.0091 -0.0006 6 7 3.6005 -1.2077 -0.0008 7 6 4.0500 -2.4821 -0.0013 8 6 2.9650 -3.3357 -0.0008 9 6 3.0119 -4.8100 -0.0006 10 8 1.9788 -5.4513 -0.0006 11 7 4.2000 -5.4464 -0.0004 12 6 4.2467 -6.9106 -0.0007 13 6 5.6828 -7.3674 0.0003 14 6 6.2251 -7.6453 1.1425 15 6 7.6529 -8.0878 1.3012 16 7 8.2075 -8.4086 -0.0232 17 6 8.9789 -9.5218 -0.2262 18 1 9.0565 -9.9523 -1.2136 19 6 9.6610 -10.0968 0.8373 20 7 9.8226 -9.4235 1.9567 21 14 10.3497 -11.8260 0.6797 22 1 11.3258 -11.8701 -0.4385 23 1 11.0281 -12.2058 1.9449 24 1 9.2421 -12.7771 0.4078 25 6 7.9012 -7.4768 -1.1226 26 6 6.3832 -7.4676 -1.3220 27 6 1.8020 -2.5351 -0.0061 28 6 2.2211 -1.2203 -0.0003 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6604 2.1113 0.0004 33 1 4.1461 2.0887 -0.0010 34 1 5.3528 -0.0026 -0.0006 35 1 5.0872 -2.7831 -0.0012 36 1 5.0242 -4.9349 0.0000 37 1 3.7450 -7.2899 -0.8909 38 1 3.7445 -7.2904 0.8890 39 1 5.6191 -7.5496 2.0314 40 1 8.2337 -7.2870 1.7589 41 1 7.6912 -8.9745 1.9340 42 1 10.2990 -9.8255 2.7000 43 1 8.3913 -7.8113 -2.0370 44 1 8.2453 -6.4754 -0.8640 45 1 6.0797 -8.3875 -1.8219 46 1 6.1062 -6.6152 -1.9422 47 1 0.7802 -2.8847 -0.0116 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001367217.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:40:37 Heat of formation + Delta-G solvation = 55.402917 kcal Electronic energy + Delta-G solvation = -27889.618385 eV Core-core repulsion = 24038.253064 eV Total energy + Delta-G solvation = -3851.365321 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.23018 -40.63959 -39.29425 -37.57350 -36.39943 -35.02997 -34.53903 -32.70824 -31.53320 -31.26945 -29.64425 -28.44104 -27.78227 -26.14775 -24.57999 -24.12397 -22.98591 -22.77393 -22.37074 -20.95968 -19.49537 -18.90405 -18.06653 -17.50046 -17.15730 -16.89123 -16.65456 -16.63720 -16.19101 -16.00734 -15.67649 -15.32623 -15.20405 -15.03253 -14.77479 -14.45107 -14.22226 -14.12922 -13.94694 -13.68522 -13.60686 -13.27317 -13.15469 -12.90832 -12.76307 -12.58469 -12.57135 -12.34576 -12.25825 -12.10922 -12.04516 -11.70132 -11.31826 -11.16666 -11.10335 -10.67558 -10.16667 -9.65552 -9.54371 -8.74832 -8.31514 -7.88044 -5.28826 -0.20214 0.36610 1.07029 1.17820 1.47238 1.50209 1.56250 1.70410 2.45370 2.46874 2.51638 2.55214 3.29068 3.51108 3.62660 3.75002 3.81919 3.91670 3.97988 4.01475 4.10438 4.17764 4.39710 4.45042 4.48405 4.54160 4.66752 4.74266 4.77769 4.79761 4.83818 4.85300 4.92246 4.95067 5.11230 5.14167 5.22101 5.24713 5.33075 5.37343 5.42924 5.47263 5.48710 5.61767 5.66231 5.77629 5.88602 6.16802 6.28965 6.34306 6.58351 7.13780 7.22658 7.83913 8.37877 9.20352 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.024131 B = 0.001981 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.063109 B =14133.441533 C =14778.933984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.067 4.067 3 C -0.133 4.133 4 C -0.125 4.125 5 C 0.016 3.984 6 N -0.339 5.339 7 C -0.002 4.002 8 C -0.193 4.193 9 C 0.585 3.415 10 O -0.588 6.588 11 N -0.705 5.705 12 C 0.168 3.832 13 C -0.138 4.138 14 C -0.141 4.141 15 C 0.205 3.795 16 N -0.615 5.615 17 C -0.256 4.256 18 H 0.070 0.930 19 C -0.055 4.055 20 N -0.939 5.939 21 Si 0.967 3.033 22 H -0.275 1.275 23 H -0.295 1.295 24 H -0.281 1.281 25 C 0.139 3.861 26 C -0.084 4.084 27 C -0.165 4.165 28 C 0.021 3.979 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.161 0.839 33 H 0.181 0.819 34 H 0.192 0.808 35 H 0.205 0.795 36 H 0.411 0.589 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.017 0.983 41 H 0.057 0.943 42 H 0.250 0.750 43 H 0.059 0.941 44 H 0.030 0.970 45 H 0.063 0.937 46 H 0.088 0.912 47 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.495 25.574 -4.696 29.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.068 4.068 3 C -0.153 4.153 4 C -0.145 4.145 5 C -0.101 4.101 6 N -0.002 5.002 7 C -0.136 4.136 8 C -0.201 4.201 9 C 0.374 3.626 10 O -0.469 6.469 11 N -0.356 5.356 12 C 0.044 3.956 13 C -0.138 4.138 14 C -0.162 4.162 15 C 0.080 3.920 16 N -0.339 5.339 17 C -0.386 4.386 18 H 0.088 0.912 19 C -0.250 4.250 20 N -0.586 5.586 21 Si 0.796 3.204 22 H -0.200 1.200 23 H -0.221 1.221 24 H -0.208 1.208 25 C 0.014 3.986 26 C -0.123 4.123 27 C -0.189 4.189 28 C -0.084 4.084 29 H 0.100 0.900 30 H 0.112 0.888 31 H 0.082 0.918 32 H 0.178 0.822 33 H 0.198 0.802 34 H 0.209 0.791 35 H 0.221 0.779 36 H 0.248 0.752 37 H 0.087 0.913 38 H 0.079 0.921 39 H 0.129 0.871 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.078 0.922 44 H 0.048 0.952 45 H 0.081 0.919 46 H 0.106 0.894 47 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -14.900 25.202 -4.583 29.634 hybrid contribution 0.970 -1.201 0.400 1.595 sum -13.930 24.001 -4.183 28.064 Atomic orbital electron populations 1.20771 0.88452 1.03983 1.03408 1.19696 0.97628 0.89864 0.99576 1.21286 0.94378 0.98331 1.01340 1.21236 0.94773 0.98152 1.00296 1.22365 1.00103 0.82386 1.05230 1.41479 1.07082 1.06105 1.45527 1.22448 1.00017 0.80496 1.10648 1.19530 0.94664 0.91627 1.14253 1.17741 0.83115 0.86641 0.75081 1.90730 1.34819 1.68586 1.52805 1.45824 1.08221 1.07151 1.74425 1.20249 0.93698 0.79679 1.01930 1.20577 0.94556 1.03178 0.95514 1.22964 0.97637 0.97767 0.97793 1.19429 0.87631 0.97649 0.87318 1.44434 1.58037 1.25495 1.05938 1.19474 1.20749 1.02822 0.95581 0.91191 1.25733 0.99405 1.02515 0.97324 1.70152 1.45831 1.37116 1.05464 0.85335 0.78040 0.80452 0.76600 1.20028 1.22082 1.20765 1.21145 0.93782 0.92507 0.91200 1.20701 0.95704 1.01848 0.94046 1.21085 0.98520 0.89879 1.09432 1.18905 0.82638 0.95181 1.11709 0.90047 0.88848 0.91765 0.82186 0.80177 0.79111 0.77872 0.75234 0.91283 0.92055 0.87085 0.96555 0.92516 0.94129 0.92242 0.95194 0.91896 0.89359 0.83766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.91 71.24 0.71 -0.51 16 2 C -0.07 -1.03 5.90 -19.67 -0.12 -1.15 16 3 C -0.13 -1.40 9.72 22.32 0.22 -1.18 16 4 C -0.13 -1.07 9.97 22.06 0.22 -0.85 16 5 C 0.02 0.18 10.89 82.97 0.90 1.09 16 6 N -0.34 -6.21 2.92 -345.07 -1.01 -7.21 16 7 C 0.00 -0.04 11.09 84.14 0.93 0.90 16 8 C -0.19 -4.97 6.12 -20.15 -0.12 -5.10 16 9 C 0.59 17.63 7.82 86.69 0.68 18.31 16 10 O -0.59 -22.34 16.92 -4.01 -0.07 -22.41 16 11 N -0.71 -18.34 5.54 -470.04 -2.60 -20.94 16 12 C 0.17 4.90 5.66 85.63 0.48 5.39 16 13 C -0.14 -4.47 5.22 -15.15 -0.08 -4.55 16 14 C -0.14 -5.27 9.47 27.10 0.26 -5.02 16 15 C 0.20 9.80 5.25 85.40 0.45 10.25 16 16 N -0.61 -30.47 3.01 -703.08 -2.12 -32.59 16 17 C -0.26 -14.01 9.71 84.03 0.82 -13.20 16 18 H 0.07 3.71 7.88 -2.91 -0.02 3.69 16 19 C -0.05 -3.06 5.01 84.86 0.43 -2.64 16 20 N -0.94 -55.12 11.07 21.65 0.24 -54.88 16 21 Si 0.97 44.99 29.58 68.60 2.03 47.02 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 C 0.14 5.43 6.57 86.26 0.57 6.00 16 26 C -0.08 -2.70 5.95 29.65 0.18 -2.53 16 27 C -0.17 -4.20 10.27 22.94 0.24 -3.97 16 28 C 0.02 0.44 6.60 38.90 0.26 0.70 16 29 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.09 0.61 8.09 -2.39 -0.02 0.59 16 31 H 0.06 0.83 7.69 -2.39 -0.02 0.81 16 32 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 33 H 0.18 0.24 8.06 -2.91 -0.02 0.22 16 34 H 0.19 0.93 8.06 -2.91 -0.02 0.90 16 35 H 0.20 2.56 7.42 -2.91 -0.02 2.53 16 36 H 0.41 8.70 7.36 -92.71 -0.68 8.02 16 37 H 0.07 2.05 8.11 -2.39 -0.02 2.03 16 38 H 0.06 1.90 7.78 -2.38 -0.02 1.88 16 39 H 0.11 3.76 7.73 -2.91 -0.02 3.74 16 40 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 41 H 0.06 3.10 6.40 -2.39 -0.02 3.08 16 42 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 43 H 0.06 2.27 7.96 -2.39 -0.02 2.25 16 44 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.06 2.11 8.14 -2.38 -0.02 2.09 16 46 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 47 H 0.14 3.69 7.93 -2.91 -0.02 3.67 16 Total: -1.00 -74.91 389.02 3.78 -71.13 By element: Atomic # 1 Polarization: 17.64 SS G_CDS: 0.30 Total: 17.94 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 7.01 Total: 1.94 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -5.49 Total: -115.62 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.07 Total: -22.41 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -74.91 3.78 -71.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001367217.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.531 kcal (2) G-P(sol) polarization free energy of solvation -74.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds