Wall clock time and date at job start Tue Mar 31 2020 22:19:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38755 * 119.84436 * 2 1 4 4 C 1.37771 * 120.63153 * 180.02562 * 3 2 1 5 5 C 1.39114 * 119.93093 * 359.97438 * 4 3 2 6 6 N 1.37964 * 133.18980 * 179.97438 * 5 4 3 7 7 H 0.96998 * 124.78120 * 359.96179 * 6 5 4 8 8 C 1.35474 * 110.42904 * 180.02562 * 6 5 4 9 9 C 1.36379 * 109.76489 * 359.97438 * 8 6 5 10 10 C 1.46914 * 126.76419 * 180.02562 * 9 8 6 11 11 O 1.21668 * 119.99756 * 180.02562 * 10 9 8 12 12 N 1.34777 * 119.99756 * 0.02562 * 10 9 8 13 13 C 1.46510 * 119.99531 * 179.72645 * 12 10 9 14 14 C 1.50701 * 109.46649 * 180.27838 * 13 12 10 15 15 C 1.29447 * 117.69678 * 95.00465 * 14 13 12 16 16 C 1.50319 * 123.65536 * 180.85384 * 15 14 13 17 17 N 1.47013 * 109.16349 * 349.02306 * 16 15 14 18 18 C 1.36943 * 121.37171 * 222.97160 * 17 16 15 19 19 H 1.07991 * 120.00016 * 155.96805 * 18 17 16 20 20 C 1.38813 * 119.99580 * 335.96044 * 18 17 16 21 21 N 1.31618 * 120.00505 * 344.52493 * 20 18 17 22 22 Si 1.86800 * 119.99584 * 164.52960 * 20 18 17 23 23 H 1.48499 * 109.47360 * 59.99547 * 22 20 18 24 24 H 1.48505 * 109.47373 * 180.02562 * 22 20 18 25 25 H 1.48507 * 109.47003 * 300.00042 * 22 20 18 26 26 C 1.47333 * 117.25318 * 42.94171 * 17 16 15 27 27 C 1.49973 * 117.69227 * 274.73406 * 14 13 12 28 28 C 1.40400 * 119.36384 * 0.30659 * 5 4 3 29 29 C 1.37748 * 119.85064 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46854 * 90.00227 * 1 2 3 31 31 H 1.09003 * 109.46657 * 209.99841 * 1 2 3 32 32 H 1.08999 * 109.47263 * 329.99979 * 1 2 3 33 33 H 1.08001 * 119.68815 * 359.97438 * 3 2 1 34 34 H 1.08006 * 120.03244 * 179.97438 * 4 3 2 35 35 H 1.07999 * 125.11479 * 180.02562 * 8 6 5 36 36 H 0.96998 * 120.00331 * 0.02562 * 12 10 9 37 37 H 1.08993 * 109.47052 * 300.27484 * 13 12 10 38 38 H 1.08998 * 109.47190 * 60.27998 * 13 12 10 39 39 H 1.07999 * 118.17423 * 0.87250 * 15 14 13 40 40 H 1.09003 * 109.52654 * 108.92214 * 16 15 14 41 41 H 1.08993 * 109.52762 * 229.11080 * 16 15 14 42 42 H 0.97001 * 119.99949 * 179.97438 * 21 20 18 43 43 H 1.08999 * 109.77642 * 57.81197 * 26 17 16 44 44 H 1.08993 * 109.78173 * 178.62304 * 26 17 16 45 45 H 1.08998 * 109.31837 * 281.29732 * 27 14 13 46 46 H 1.08999 * 109.31348 * 40.72281 * 27 14 13 47 47 H 1.07995 * 120.16607 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.2035 0.0000 4 6 3.5751 1.2225 -0.0005 5 6 4.2857 0.0265 -0.0005 6 7 5.6328 -0.2714 -0.0014 7 1 6.3451 0.3869 -0.0028 8 6 5.8204 -1.6131 -0.0015 9 6 4.6131 -2.2476 -0.0001 10 6 4.3822 -3.6984 0.0008 11 8 3.2460 -4.1336 0.0015 12 7 5.4291 -4.5473 0.0007 13 6 5.1988 -5.9942 0.0077 14 6 6.5230 -6.7135 0.0131 15 6 7.0025 -7.0828 1.1573 16 6 8.3183 -7.7912 1.3198 17 7 8.8061 -8.2122 -0.0016 18 6 9.3533 -9.4522 -0.1977 19 1 9.3481 -9.8950 -1.1826 20 6 9.9147 -10.1397 0.8696 21 7 10.1999 -9.5030 1.9857 22 14 10.2655 -11.9684 0.7216 23 1 11.2161 -12.2014 -0.3952 24 1 10.8600 -12.4627 1.9896 25 1 8.9987 -12.6954 0.4531 26 6 8.6813 -7.2454 -1.1063 27 6 7.1895 -6.9565 -1.3083 28 6 3.5855 -1.1904 -0.0065 29 6 2.1927 -1.1947 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6499 2.1344 -0.0004 34 1 4.1028 2.1649 -0.0009 35 1 6.7813 -2.1061 -0.0018 36 1 6.3349 -4.2004 0.0005 37 1 4.6331 -6.2678 0.8983 38 1 4.6354 -6.2767 -0.8816 39 1 6.4248 -6.8704 2.0448 40 1 9.0417 -7.1159 1.7768 41 1 8.1846 -8.6669 1.9547 42 1 10.5919 -9.9836 2.7316 43 1 9.2080 -6.3254 -0.8525 44 1 9.0998 -7.6712 -2.0182 45 1 6.7171 -7.8072 -1.7994 46 1 7.0771 -6.0730 -1.9367 47 1 1.6530 -2.1302 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001001471490.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:19:51 Heat of formation + Delta-G solvation = 33.346637 kcal Electronic energy + Delta-G solvation = -27898.229732 eV Core-core repulsion = 24045.907979 eV Total energy + Delta-G solvation = -3852.321753 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.40429 -40.41033 -39.21003 -38.32086 -36.34602 -34.52671 -33.21135 -32.54636 -32.30023 -31.41542 -30.14238 -28.34831 -27.33541 -26.00098 -24.43955 -23.76539 -23.59687 -22.70479 -21.97042 -20.75168 -19.48378 -19.19907 -17.77669 -17.46496 -17.14157 -16.89649 -16.64141 -16.29609 -15.89362 -15.69735 -15.54061 -15.28486 -15.18214 -15.10726 -14.72648 -14.49797 -14.30926 -14.19485 -13.92613 -13.61938 -13.54596 -13.25842 -12.96734 -12.89231 -12.76082 -12.57771 -12.48583 -12.25089 -12.13619 -12.09183 -11.90279 -11.69468 -11.26895 -11.02240 -10.72513 -10.66778 -10.06943 -9.63986 -9.14020 -8.73473 -8.71592 -7.87533 -5.28290 0.02027 0.55399 1.03145 1.20215 1.47383 1.50334 1.56304 2.07789 2.43015 2.51038 2.52050 2.93587 3.29558 3.64143 3.69385 3.84050 3.89638 3.95412 3.99432 4.08327 4.31236 4.42860 4.46314 4.47483 4.55991 4.61440 4.70839 4.74215 4.81731 4.86018 4.87330 4.90009 4.94586 5.12609 5.13914 5.20792 5.23724 5.39460 5.41612 5.45949 5.49981 5.56342 5.62525 5.64207 5.77782 5.79397 6.14399 6.18187 6.35073 6.55226 6.68477 7.14743 7.33911 7.85145 8.38417 9.20722 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.028923 B = 0.001940 C = 0.001882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.848056 B =14429.856694 C =14871.715762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.110 4.110 3 C -0.107 4.107 4 C -0.114 4.114 5 C 0.066 3.934 6 N -0.559 5.559 7 H 0.440 0.560 8 C 0.147 3.853 9 C -0.276 4.276 10 C 0.585 3.415 11 O -0.595 6.595 12 N -0.709 5.709 13 C 0.170 3.830 14 C -0.136 4.136 15 C -0.142 4.142 16 C 0.206 3.794 17 N -0.615 5.615 18 C -0.256 4.256 19 H 0.070 0.930 20 C -0.054 4.054 21 N -0.938 5.938 22 Si 0.966 3.034 23 H -0.275 1.275 24 H -0.295 1.295 25 H -0.282 1.282 26 C 0.139 3.861 27 C -0.084 4.084 28 C -0.088 4.088 29 C -0.103 4.103 30 H 0.075 0.925 31 H 0.057 0.943 32 H 0.085 0.915 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.219 0.781 36 H 0.411 0.589 37 H 0.057 0.943 38 H 0.065 0.935 39 H 0.110 0.890 40 H 0.017 0.983 41 H 0.055 0.945 42 H 0.249 0.751 43 H 0.033 0.967 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.089 0.911 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.678 26.084 -4.824 28.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.111 4.111 3 C -0.125 4.125 4 C -0.134 4.134 5 C -0.039 4.039 6 N -0.162 5.162 7 H 0.282 0.718 8 C 0.011 3.989 9 C -0.287 4.287 10 C 0.376 3.624 11 O -0.478 6.478 12 N -0.360 5.360 13 C 0.046 3.954 14 C -0.137 4.137 15 C -0.162 4.162 16 C 0.080 3.920 17 N -0.339 5.339 18 C -0.386 4.386 19 H 0.087 0.913 20 C -0.249 4.249 21 N -0.585 5.585 22 Si 0.795 3.205 23 H -0.200 1.200 24 H -0.221 1.221 25 H -0.208 1.208 26 C 0.014 3.986 27 C -0.123 4.123 28 C -0.093 4.093 29 C -0.122 4.122 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.174 0.826 34 H 0.173 0.827 35 H 0.236 0.764 36 H 0.247 0.753 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.128 0.872 40 H 0.035 0.965 41 H 0.073 0.927 42 H 0.059 0.941 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.080 0.920 46 H 0.107 0.893 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.294 25.788 -4.709 28.954 hybrid contribution 1.019 -1.245 0.390 1.655 sum -11.275 24.543 -4.318 27.352 Atomic orbital electron populations 1.20779 0.89694 1.03279 1.02838 1.20053 0.97326 0.92451 1.01289 1.21079 0.93299 0.98016 1.00145 1.20416 0.93943 0.95346 1.03723 1.18426 0.83933 0.95045 1.06466 1.41521 1.06062 1.07008 1.61566 0.71790 1.22637 0.99271 0.82878 0.94102 1.19984 0.93929 0.91341 1.23419 1.17604 0.84151 0.85682 0.75003 1.90725 1.24197 1.79548 1.53306 1.45761 1.09311 1.05733 1.75178 1.20186 0.94324 0.79263 1.01586 1.20576 0.96095 1.01544 0.95480 1.22945 0.97795 0.97701 0.97770 1.19401 0.89200 0.96014 0.87339 1.44401 1.70258 1.13268 1.06009 1.19469 1.30425 0.93133 0.95615 0.91258 1.25720 0.99367 1.02490 0.97353 1.70149 1.47252 1.35658 1.05446 0.85351 0.77833 0.80739 0.76594 1.20028 1.22093 1.20822 1.21183 0.94228 0.92140 0.91020 1.20735 0.96143 1.01374 0.94030 1.19054 0.93408 0.92140 1.04650 1.20541 0.92426 0.98136 1.01061 0.90646 0.92377 0.89603 0.82610 0.82671 0.76435 0.75256 0.92447 0.91652 0.87186 0.96508 0.92654 0.94145 0.94916 0.92303 0.92046 0.89265 0.87810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.59 10.00 71.24 0.71 -0.88 16 2 C -0.11 -2.17 5.88 -19.86 -0.12 -2.29 16 3 C -0.11 -1.56 9.66 22.28 0.22 -1.35 16 4 C -0.11 -1.58 10.07 22.37 0.23 -1.36 16 5 C 0.07 1.20 7.26 38.92 0.28 1.48 16 6 N -0.56 -6.42 5.99 -187.07 -1.12 -7.54 16 7 H 0.44 1.46 8.96 -92.71 -0.83 0.63 16 8 C 0.15 2.07 11.33 83.70 0.95 3.02 16 9 C -0.28 -6.71 6.27 -19.02 -0.12 -6.83 16 10 C 0.58 17.42 7.80 86.51 0.67 18.10 16 11 O -0.60 -22.91 16.16 -4.25 -0.07 -22.98 16 12 N -0.71 -17.76 5.54 -470.58 -2.61 -20.37 16 13 C 0.17 4.95 5.66 85.63 0.48 5.43 16 14 C -0.14 -4.37 5.22 -15.13 -0.08 -4.45 16 15 C -0.14 -5.23 9.47 27.11 0.26 -4.98 16 16 C 0.21 9.75 5.23 85.42 0.45 10.20 16 17 N -0.62 -30.21 3.01 -703.05 -2.11 -32.33 16 18 C -0.26 -13.95 9.71 84.03 0.82 -13.14 16 19 H 0.07 3.66 7.88 -2.92 -0.02 3.64 16 20 C -0.05 -3.02 5.01 84.86 0.43 -2.60 16 21 N -0.94 -54.84 11.08 21.65 0.24 -54.60 16 22 Si 0.97 44.87 29.58 68.60 2.03 46.90 16 23 H -0.27 -12.25 7.11 99.48 0.71 -11.55 16 24 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 25 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 26 C 0.14 5.37 6.59 86.32 0.57 5.94 16 27 C -0.08 -2.65 5.95 29.72 0.18 -2.48 16 28 C -0.09 -2.26 6.27 -20.08 -0.13 -2.39 16 29 C -0.10 -2.73 9.49 22.41 0.21 -2.52 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.06 0.93 8.08 -2.39 -0.02 0.91 16 32 H 0.09 0.86 8.08 -2.39 -0.02 0.84 16 33 H 0.16 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.16 1.04 8.06 -2.91 -0.02 1.02 16 35 H 0.22 1.24 7.38 -2.91 -0.02 1.22 16 36 H 0.41 7.86 7.34 -92.71 -0.68 7.18 16 37 H 0.06 1.80 7.78 -2.39 -0.02 1.78 16 38 H 0.07 1.96 8.11 -2.39 -0.02 1.94 16 39 H 0.11 3.70 7.73 -2.91 -0.02 3.68 16 40 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.06 3.01 6.41 -2.39 -0.02 3.00 16 42 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 43 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 2.21 7.96 -2.39 -0.02 2.20 16 45 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 46 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 47 H 0.10 3.22 7.45 -2.91 -0.02 3.20 16 Total: -1.00 -77.51 387.84 1.86 -75.65 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -0.51 Total: 16.36 kcal Atomic # 6 Polarization: -7.10 SS G_CDS: 6.00 Total: -1.10 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -5.60 Total: -114.83 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.07 Total: -22.98 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.90 kcal Total: -77.51 1.86 -75.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001001471490.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.996 kcal (2) G-P(sol) polarization free energy of solvation -77.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds