Wall clock time and date at job start Tue Mar 31 2020 22:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36544 * 120.87748 * 2 1 4 4 C 1.40240 * 119.81671 * 179.97438 * 3 2 1 5 5 C 1.48279 * 119.23652 * 179.97438 * 4 3 2 6 6 O 1.21493 * 119.99939 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99697 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99981 * 179.97438 * 7 5 4 9 9 C 1.53081 * 109.45080 * 84.78441 * 8 7 5 10 10 C 1.53190 * 109.29209 * 181.24433 * 9 8 7 11 11 N 1.46921 * 108.89311 * 305.57883 * 10 9 8 12 12 C 1.36940 * 120.63187 * 233.51481 * 11 10 9 13 13 H 1.08001 * 120.00319 * 152.61971 * 12 11 10 14 14 C 1.38813 * 119.99903 * 332.62203 * 12 11 10 15 15 N 1.31624 * 120.00070 * 159.34992 * 14 12 11 16 16 Si 1.86800 * 120.00077 * 339.35529 * 14 12 11 17 17 H 1.48494 * 109.47321 * 92.87851 * 16 14 12 18 18 H 1.48501 * 109.47194 * 212.88430 * 16 14 12 19 19 H 1.48509 * 109.46983 * 332.87654 * 16 14 12 20 20 C 1.46923 * 118.74178 * 53.54201 * 11 10 9 21 21 C 1.53035 * 109.46006 * 204.99622 * 8 7 5 22 22 N 1.31906 * 121.52180 * 0.25679 * 4 3 2 23 23 C 1.33241 * 121.28957 * 359.47508 * 22 4 3 24 24 C 1.40838 * 120.97725 * 180.25963 * 23 22 4 25 25 C 1.35989 * 119.73343 * 180.25428 * 24 23 22 26 26 C 1.39440 * 121.09127 * 0.02562 * 25 24 23 27 27 C 1.36126 * 120.91947 * 359.93863 * 26 25 24 28 28 C 1.40430 * 119.64928 * 0.07680 * 27 26 25 29 29 H 1.08994 * 109.47266 * 89.99688 * 1 2 3 30 30 H 1.08999 * 109.46897 * 210.00167 * 1 2 3 31 31 H 1.09003 * 109.46906 * 329.99970 * 1 2 3 32 32 H 1.07990 * 120.09157 * 359.95521 * 3 2 1 33 33 H 0.96997 * 119.99900 * 359.97438 * 7 5 4 34 34 H 1.08996 * 109.45705 * 324.97360 * 8 7 5 35 35 H 1.08992 * 109.38800 * 61.36852 * 9 8 7 36 36 H 1.09002 * 109.61927 * 301.26130 * 9 8 7 37 37 H 1.08999 * 109.58729 * 185.71870 * 10 9 8 38 38 H 1.09004 * 109.58886 * 65.43758 * 10 9 8 39 39 H 0.97001 * 119.99914 * 180.02562 * 15 14 12 40 40 H 1.09004 * 109.59094 * 66.17180 * 20 11 10 41 41 H 1.09001 * 109.59077 * 186.46452 * 20 11 10 42 42 H 1.09002 * 109.49848 * 58.66419 * 21 8 7 43 43 H 1.08999 * 109.49849 * 298.56228 * 21 8 7 44 44 H 1.08003 * 120.13008 * 0.23384 * 24 23 22 45 45 H 1.08000 * 119.45160 * 180.02562 * 25 24 23 46 46 H 1.07990 * 119.54146 * 179.97438 * 26 25 24 47 47 H 1.07995 * 120.18143 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1719 0.0000 4 6 3.6099 1.1459 0.0005 5 6 4.3580 2.4262 0.0000 6 8 3.7560 3.4815 -0.0015 7 7 5.7058 2.4192 -0.0001 8 6 6.4449 3.6840 -0.0012 9 6 6.5888 4.1916 1.4358 10 6 7.3349 5.5296 1.4276 11 7 8.6080 5.3600 0.7143 12 6 9.7907 5.7217 1.3021 13 1 10.7082 5.2275 1.0185 14 6 9.8105 6.7237 2.2626 15 7 10.8158 6.8051 3.1082 16 14 8.4101 7.9565 2.3552 17 1 7.3910 7.4764 3.3227 18 1 8.9366 9.2711 2.8023 19 1 7.7894 8.1023 1.0139 20 6 8.5882 4.7954 -0.6420 21 6 7.8312 3.4638 -0.6107 22 7 4.2786 0.0090 -0.0040 23 6 3.6480 -1.1648 0.0012 24 6 4.3686 -2.3748 0.0018 25 6 3.6992 -3.5585 0.0018 26 6 2.3053 -3.5974 0.0008 27 6 1.5735 -2.4496 0.0009 28 6 2.2292 -1.2077 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6837 2.1161 -0.0007 33 1 6.1863 1.5766 0.0007 34 1 5.9014 4.4216 -0.5917 35 1 7.1515 3.4649 2.0216 36 1 5.6012 4.3284 1.8763 37 1 7.5295 5.8457 2.4525 38 1 6.7300 6.2822 0.9218 39 1 10.8294 7.5050 3.7797 40 1 8.0844 5.4862 -1.3181 41 1 9.6098 4.6293 -0.9837 42 1 7.7257 3.0814 -1.6260 43 1 8.3844 2.7450 -0.0063 44 1 5.4486 -2.3627 0.0018 45 1 4.2563 -4.4837 0.0027 46 1 1.7993 -4.5514 0.0004 47 1 0.4945 -2.4936 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003178750.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:06 Heat of formation + Delta-G solvation = 40.559582 kcal Electronic energy + Delta-G solvation = -28556.605824 eV Core-core repulsion = 24704.596848 eV Total energy + Delta-G solvation = -3852.008976 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.41901 -39.72617 -37.81672 -37.05442 -35.23410 -34.51623 -32.19806 -31.18152 -30.75881 -30.38372 -29.92355 -28.21472 -25.78772 -24.39412 -23.90720 -22.81975 -22.15296 -21.57144 -20.34900 -19.71831 -18.42755 -18.10367 -17.38820 -16.75003 -16.02986 -15.67524 -15.41556 -15.18412 -14.87410 -14.57602 -14.47793 -14.14168 -14.01128 -13.73488 -13.71722 -13.50282 -13.27088 -13.14223 -12.87762 -12.60158 -12.32075 -12.06886 -12.04401 -11.90266 -11.79219 -11.75959 -11.06137 -10.82001 -10.58695 -10.57619 -10.40559 -10.12170 -10.02898 -9.91226 -9.63731 -9.47220 -9.18136 -8.80417 -8.61333 -8.57126 -6.96880 -5.92496 -3.28457 -0.15870 0.32519 1.55267 2.15833 3.05631 3.08920 3.37298 3.52631 3.56579 3.77391 3.79377 4.07462 4.29067 4.37978 4.44101 4.56607 4.72527 4.76119 4.87259 4.97943 4.98511 5.08374 5.10358 5.18549 5.30188 5.32621 5.44154 5.49350 5.59338 5.62110 5.68318 5.69374 5.85088 5.95537 6.02354 6.06269 6.09691 6.13395 6.18324 6.33449 6.40691 6.44825 6.59336 6.66303 6.70897 6.73972 6.94623 7.31624 7.66555 7.98356 8.21937 8.34916 8.95985 9.74531 10.12008 11.23315 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.002383 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.787109 B =11748.021658 C =12446.846946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.031 4.031 3 C -0.129 4.129 4 C 0.127 3.873 5 C 0.565 3.435 6 O -0.531 6.531 7 N -0.700 5.700 8 C 0.149 3.851 9 C -0.141 4.141 10 C 0.129 3.871 11 N -0.607 5.607 12 C -0.260 4.260 13 H 0.086 0.914 14 C 0.023 3.977 15 N -0.908 5.908 16 Si 0.882 3.118 17 H -0.288 1.288 18 H -0.303 1.303 19 H -0.270 1.270 20 C 0.152 3.848 21 C -0.140 4.140 22 N -0.447 5.447 23 C 0.127 3.873 24 C -0.084 4.084 25 C -0.105 4.105 26 C -0.110 4.110 27 C -0.102 4.102 28 C -0.088 4.088 29 H 0.082 0.918 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.151 0.849 33 H 0.408 0.592 34 H 0.085 0.915 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.028 0.972 39 H 0.262 0.738 40 H 0.025 0.975 41 H 0.069 0.931 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.140 0.860 45 H 0.132 0.868 46 H 0.128 0.872 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.999 -22.329 -8.260 31.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.039 4.039 3 C -0.150 4.150 4 C -0.027 4.027 5 C 0.348 3.652 6 O -0.407 6.407 7 N -0.350 5.350 8 C 0.045 3.955 9 C -0.181 4.181 10 C 0.003 3.997 11 N -0.330 5.330 12 C -0.388 4.388 13 H 0.104 0.896 14 C -0.176 4.176 15 N -0.551 5.551 16 Si 0.712 3.288 17 H -0.216 1.216 18 H -0.232 1.232 19 H -0.195 1.195 20 C 0.026 3.974 21 C -0.180 4.180 22 N -0.160 5.160 23 C 0.004 3.996 24 C -0.103 4.103 25 C -0.125 4.125 26 C -0.128 4.128 27 C -0.121 4.121 28 C -0.090 4.090 29 H 0.100 0.900 30 H 0.094 0.906 31 H 0.097 0.903 32 H 0.168 0.832 33 H 0.243 0.757 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.157 0.843 45 H 0.150 0.850 46 H 0.146 0.854 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -20.357 -21.505 -8.144 30.712 hybrid contribution -1.378 0.253 0.260 1.425 sum -21.735 -21.253 -7.884 31.405 Atomic orbital electron populations 1.20881 0.89434 1.03859 1.03338 1.20146 0.96939 0.91651 0.95172 1.21640 0.93688 0.99737 0.99907 1.21441 0.91729 0.92242 0.97255 1.17905 0.82782 0.87116 0.77366 1.90788 1.68719 1.31048 1.50125 1.46147 1.05530 1.10946 1.72335 1.21097 0.92137 0.84447 0.97800 1.22406 1.00179 0.99989 0.95557 1.21316 0.87077 0.93736 0.97613 1.44403 1.02930 1.73785 1.11908 1.18913 0.86366 1.14689 1.18839 0.89631 1.25278 0.96638 0.98033 0.97624 1.69840 1.32687 1.34400 1.18213 0.86970 0.82116 0.81503 0.78210 1.21582 1.23157 1.19452 1.20865 0.98601 0.91036 0.86942 1.22332 0.94701 1.01155 0.99829 1.67840 1.39854 0.97369 1.10901 1.18851 0.89763 0.92036 0.98985 1.20914 1.00705 0.89924 0.98739 1.20948 0.94465 0.98136 0.98935 1.21001 0.94182 0.98584 0.99021 1.21026 1.00189 0.91094 0.99768 1.18839 0.93948 0.94346 1.01869 0.89987 0.90618 0.90270 0.83162 0.75650 0.89712 0.91502 0.92293 0.90701 0.95439 0.92787 0.95675 0.91289 0.92016 0.91211 0.84263 0.85036 0.85366 0.84950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.67 9.59 36.01 0.35 -0.33 16 2 C -0.03 -0.29 5.92 -104.30 -0.62 -0.91 16 3 C -0.13 -1.48 9.23 -39.44 -0.36 -1.84 16 4 C 0.13 1.70 6.75 -82.95 -0.56 1.14 16 5 C 0.56 8.81 7.77 -12.13 -0.09 8.71 16 6 O -0.53 -9.68 15.94 5.37 0.09 -9.59 16 7 N -0.70 -10.41 5.06 -54.56 -0.28 -10.68 16 8 C 0.15 2.51 2.41 -67.87 -0.16 2.34 16 9 C -0.14 -2.71 5.66 -26.59 -0.15 -2.86 16 10 C 0.13 2.93 4.20 -3.71 -0.02 2.91 16 11 N -0.61 -14.54 2.77 -172.32 -0.48 -15.02 16 12 C -0.26 -7.30 10.03 -15.06 -0.15 -7.45 16 13 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 14 C 0.02 0.68 5.23 -17.43 -0.09 0.59 16 15 N -0.91 -28.11 13.97 55.49 0.78 -27.34 16 16 Si 0.88 22.92 24.34 -169.99 -4.14 18.78 16 17 H -0.29 -7.29 6.62 56.52 0.37 -6.92 16 18 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 19 H -0.27 -6.91 6.64 56.52 0.38 -6.53 16 20 C 0.15 2.96 6.52 -3.71 -0.02 2.94 16 21 C -0.14 -2.26 5.55 -26.61 -0.15 -2.41 16 22 N -0.45 -5.72 9.47 -7.54 -0.07 -5.79 16 23 C 0.13 1.42 6.61 -84.85 -0.56 0.86 16 24 C -0.08 -0.74 9.99 -39.41 -0.39 -1.14 16 25 C -0.10 -0.69 9.94 -39.94 -0.40 -1.09 16 26 C -0.11 -0.66 9.96 -39.89 -0.40 -1.06 16 27 C -0.10 -0.71 9.31 -39.52 -0.37 -1.08 16 28 C -0.09 -0.85 5.75 -106.71 -0.61 -1.47 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.32 6.51 -51.93 -0.34 -0.02 16 31 H 0.08 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.15 1.63 7.60 -52.49 -0.40 1.24 16 33 H 0.41 5.41 7.91 -40.82 -0.32 5.09 16 34 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 35 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.86 4.50 -51.93 -0.23 1.63 16 38 H 0.03 0.63 7.07 -51.93 -0.37 0.26 16 39 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 1.31 7.93 -51.93 -0.41 0.90 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.14 1.08 8.06 -52.48 -0.42 0.66 16 45 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 46 H 0.13 0.43 8.06 -52.49 -0.42 0.01 16 47 H 0.13 0.59 6.43 -52.49 -0.34 0.26 16 LS Contribution 375.34 15.07 5.66 5.66 Total: -1.00 -33.82 375.34 -9.85 -43.67 By element: Atomic # 1 Polarization: 9.08 SS G_CDS: -6.64 Total: 2.44 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -4.76 Total: -2.13 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.05 Total: -58.83 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.59 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.14 Total: 18.78 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.82 -9.85 -43.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003178750.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.231 kcal (2) G-P(sol) polarization free energy of solvation -33.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds