Wall clock time and date at job start Tue Mar 31 2020 22:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.36544 * 120.87748 * 2 1 4 4 C 1.40240 * 119.81671 * 179.97438 * 3 2 1 5 5 C 1.48279 * 119.23652 * 179.97438 * 4 3 2 6 6 O 1.21493 * 119.99939 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99697 * 180.02562 * 5 4 3 8 8 C 1.46499 * 119.99981 * 179.97438 * 7 5 4 9 9 C 1.53081 * 109.45080 * 84.78441 * 8 7 5 10 10 C 1.53190 * 109.29209 * 181.24433 * 9 8 7 11 11 N 1.46921 * 108.89311 * 305.57883 * 10 9 8 12 12 C 1.36940 * 120.63187 * 233.51481 * 11 10 9 13 13 H 1.08001 * 120.00319 * 152.61971 * 12 11 10 14 14 C 1.38813 * 119.99903 * 332.62203 * 12 11 10 15 15 N 1.31624 * 120.00070 * 159.34992 * 14 12 11 16 16 Si 1.86800 * 120.00077 * 339.35529 * 14 12 11 17 17 H 1.48494 * 109.47321 * 92.87851 * 16 14 12 18 18 H 1.48501 * 109.47194 * 212.88430 * 16 14 12 19 19 H 1.48509 * 109.46983 * 332.87654 * 16 14 12 20 20 C 1.46923 * 118.74178 * 53.54201 * 11 10 9 21 21 C 1.53035 * 109.46006 * 204.99622 * 8 7 5 22 22 N 1.31906 * 121.52180 * 0.25679 * 4 3 2 23 23 C 1.33241 * 121.28957 * 359.47508 * 22 4 3 24 24 C 1.40838 * 120.97725 * 180.25963 * 23 22 4 25 25 C 1.35989 * 119.73343 * 180.25428 * 24 23 22 26 26 C 1.39440 * 121.09127 * 0.02562 * 25 24 23 27 27 C 1.36126 * 120.91947 * 359.93863 * 26 25 24 28 28 C 1.40430 * 119.64928 * 0.07680 * 27 26 25 29 29 H 1.08994 * 109.47266 * 89.99688 * 1 2 3 30 30 H 1.08999 * 109.46897 * 210.00167 * 1 2 3 31 31 H 1.09003 * 109.46906 * 329.99970 * 1 2 3 32 32 H 1.07990 * 120.09157 * 359.95521 * 3 2 1 33 33 H 0.96997 * 119.99900 * 359.97438 * 7 5 4 34 34 H 1.08996 * 109.45705 * 324.97360 * 8 7 5 35 35 H 1.08992 * 109.38800 * 61.36852 * 9 8 7 36 36 H 1.09002 * 109.61927 * 301.26130 * 9 8 7 37 37 H 1.08999 * 109.58729 * 185.71870 * 10 9 8 38 38 H 1.09004 * 109.58886 * 65.43758 * 10 9 8 39 39 H 0.97001 * 119.99914 * 180.02562 * 15 14 12 40 40 H 1.09004 * 109.59094 * 66.17180 * 20 11 10 41 41 H 1.09001 * 109.59077 * 186.46452 * 20 11 10 42 42 H 1.09002 * 109.49848 * 58.66419 * 21 8 7 43 43 H 1.08999 * 109.49849 * 298.56228 * 21 8 7 44 44 H 1.08003 * 120.13008 * 0.23384 * 24 23 22 45 45 H 1.08000 * 119.45160 * 180.02562 * 25 24 23 46 46 H 1.07990 * 119.54146 * 179.97438 * 26 25 24 47 47 H 1.07995 * 120.18143 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1719 0.0000 4 6 3.6099 1.1459 0.0005 5 6 4.3580 2.4262 0.0000 6 8 3.7560 3.4815 -0.0015 7 7 5.7058 2.4192 -0.0001 8 6 6.4449 3.6840 -0.0012 9 6 6.5888 4.1916 1.4358 10 6 7.3349 5.5296 1.4276 11 7 8.6080 5.3600 0.7143 12 6 9.7907 5.7217 1.3021 13 1 10.7082 5.2275 1.0185 14 6 9.8105 6.7237 2.2626 15 7 10.8158 6.8051 3.1082 16 14 8.4101 7.9565 2.3552 17 1 7.3910 7.4764 3.3227 18 1 8.9366 9.2711 2.8023 19 1 7.7894 8.1023 1.0139 20 6 8.5882 4.7954 -0.6420 21 6 7.8312 3.4638 -0.6107 22 7 4.2786 0.0090 -0.0040 23 6 3.6480 -1.1648 0.0012 24 6 4.3686 -2.3748 0.0018 25 6 3.6992 -3.5585 0.0018 26 6 2.3053 -3.5974 0.0008 27 6 1.5735 -2.4496 0.0009 28 6 2.2292 -1.2077 0.0005 29 1 -0.3633 0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5139 32 1 1.6837 2.1161 -0.0007 33 1 6.1863 1.5766 0.0007 34 1 5.9014 4.4216 -0.5917 35 1 7.1515 3.4649 2.0216 36 1 5.6012 4.3284 1.8763 37 1 7.5295 5.8457 2.4525 38 1 6.7300 6.2822 0.9218 39 1 10.8294 7.5050 3.7797 40 1 8.0844 5.4862 -1.3181 41 1 9.6098 4.6293 -0.9837 42 1 7.7257 3.0814 -1.6260 43 1 8.3844 2.7450 -0.0063 44 1 5.4486 -2.3627 0.0018 45 1 4.2563 -4.4837 0.0027 46 1 1.7993 -4.5514 0.0004 47 1 0.4945 -2.4936 0.0005 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003178750.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:05 Heat of formation + Delta-G solvation = 18.507383 kcal Electronic energy + Delta-G solvation = -28557.562079 eV Core-core repulsion = 24704.596848 eV Total energy + Delta-G solvation = -3852.965231 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.19265 -40.91390 -39.26536 -37.88014 -36.25629 -35.75628 -34.07863 -32.27702 -32.01361 -31.45840 -31.21421 -28.79947 -27.24507 -25.70788 -24.58082 -24.46706 -23.60280 -22.47582 -21.49479 -21.19274 -19.27889 -19.00874 -18.75364 -18.11884 -17.51203 -16.82950 -16.45277 -16.40488 -15.96807 -15.69263 -15.46600 -15.38783 -15.29782 -15.07657 -14.80338 -14.55765 -14.35437 -14.14285 -14.03999 -13.93993 -13.80930 -13.46584 -13.01569 -12.80511 -12.67685 -12.64196 -12.57515 -12.35994 -12.25854 -12.08667 -11.79326 -11.58692 -11.50497 -11.36610 -11.21977 -10.78880 -10.63054 -10.18448 -9.83880 -9.22533 -8.98883 -8.18275 -5.49886 -0.88866 -0.38053 0.88597 1.28609 1.31757 1.38923 1.47863 1.92482 2.18395 2.39774 2.90795 3.02161 3.04096 3.31738 3.47551 3.55982 3.71962 3.75194 3.82879 3.89041 4.13743 4.18280 4.20002 4.26791 4.30225 4.42512 4.46926 4.48810 4.61262 4.63475 4.67280 4.73722 4.80191 4.89624 4.96328 4.98731 5.01606 5.04612 5.09243 5.11510 5.12939 5.35722 5.39056 5.41731 5.44589 5.50621 5.84971 5.85359 6.11718 6.31370 6.65498 6.88586 7.03965 7.59575 8.00950 9.01275 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020988 B = 0.002383 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1333.787109 B =11748.021658 C =12446.846946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.021 4.021 3 C -0.152 4.152 4 C 0.103 3.897 5 C 0.565 3.435 6 O -0.564 6.564 7 N -0.692 5.692 8 C 0.157 3.843 9 C -0.131 4.131 10 C 0.126 3.874 11 N -0.619 5.619 12 C -0.245 4.245 13 H 0.060 0.940 14 C -0.033 4.033 15 N -0.954 5.954 16 Si 0.939 3.061 17 H -0.281 1.281 18 H -0.308 1.308 19 H -0.263 1.263 20 C 0.145 3.855 21 C -0.126 4.126 22 N -0.462 5.462 23 C 0.100 3.900 24 C -0.109 4.109 25 C -0.092 4.092 26 C -0.102 4.102 27 C -0.104 4.104 28 C -0.101 4.101 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.147 0.853 33 H 0.416 0.584 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.030 0.970 39 H 0.261 0.739 40 H 0.037 0.963 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.141 0.859 45 H 0.161 0.839 46 H 0.165 0.835 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.060 -25.674 -9.522 36.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.029 4.029 3 C -0.173 4.173 4 C -0.050 4.050 5 C 0.350 3.650 6 O -0.442 6.442 7 N -0.342 5.342 8 C 0.053 3.947 9 C -0.171 4.171 10 C 0.001 3.999 11 N -0.344 5.344 12 C -0.374 4.374 13 H 0.078 0.922 14 C -0.228 4.228 15 N -0.600 5.600 16 Si 0.768 3.232 17 H -0.208 1.208 18 H -0.237 1.237 19 H -0.187 1.187 20 C 0.020 3.980 21 C -0.165 4.165 22 N -0.175 5.175 23 C -0.024 4.024 24 C -0.127 4.127 25 C -0.112 4.112 26 C -0.120 4.120 27 C -0.123 4.123 28 C -0.103 4.103 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.101 0.899 32 H 0.165 0.835 33 H 0.254 0.746 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.088 0.912 44 H 0.159 0.841 45 H 0.179 0.821 46 H 0.182 0.818 47 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -23.443 -24.890 -9.442 35.472 hybrid contribution -0.460 1.011 0.599 1.261 sum -23.903 -23.879 -8.843 34.925 Atomic orbital electron populations 1.21006 0.86633 1.05128 1.04614 1.20549 0.98774 0.90723 0.92879 1.21668 0.93059 1.00655 1.01875 1.21129 0.92329 0.91474 1.00030 1.18275 0.82731 0.87734 0.76234 1.90753 1.69312 1.32476 1.51650 1.45952 1.05488 1.10509 1.72265 1.20846 0.92756 0.85192 0.95910 1.22242 0.99436 0.98019 0.97390 1.21279 0.86894 0.95629 0.96124 1.44532 1.01989 1.74053 1.13821 1.18899 0.87112 1.13500 1.17936 0.92184 1.25847 0.99027 0.99919 0.97972 1.69952 1.35086 1.35437 1.19551 0.86028 0.79679 0.78928 0.78520 1.20772 1.23690 1.18718 1.21092 0.99605 0.92600 0.84678 1.22164 0.93426 0.99128 1.01792 1.67731 1.40500 0.97786 1.11448 1.19292 0.91086 0.92054 0.99921 1.21090 1.01095 0.90089 1.00435 1.21376 0.95228 0.98304 0.96265 1.21485 0.93947 0.99850 0.96727 1.21398 1.01806 0.90077 0.98971 1.19149 0.93542 0.95752 1.01860 0.88465 0.88465 0.89907 0.83523 0.74618 0.90547 0.92003 0.92241 0.93065 0.95178 0.92957 0.94466 0.91088 0.88638 0.91248 0.84138 0.82143 0.81786 0.82001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.00 9.59 71.24 0.68 -0.32 16 2 C -0.02 -0.36 5.92 -19.65 -0.12 -0.48 16 3 C -0.15 -3.52 9.23 22.36 0.21 -3.31 16 4 C 0.10 2.82 6.75 42.29 0.29 3.10 16 5 C 0.56 17.94 7.77 86.91 0.68 18.61 16 6 O -0.56 -21.04 15.94 -3.69 -0.06 -21.10 16 7 N -0.69 -20.42 5.06 -444.81 -2.25 -22.68 16 8 C 0.16 5.20 2.41 45.03 0.11 5.31 16 9 C -0.13 -5.02 5.66 30.68 0.17 -4.85 16 10 C 0.13 5.75 4.20 86.36 0.36 6.11 16 11 N -0.62 -29.71 2.77 -699.09 -1.94 -31.65 16 12 C -0.24 -14.03 10.03 84.03 0.84 -13.19 16 13 H 0.06 3.69 8.06 -2.91 -0.02 3.66 16 14 C -0.03 -1.96 5.23 84.86 0.44 -1.51 16 15 N -0.95 -60.87 13.97 21.65 0.30 -60.57 16 16 Si 0.94 48.38 24.34 68.60 1.67 50.05 16 17 H -0.28 -13.96 6.62 99.48 0.66 -13.30 16 18 H -0.31 -15.98 7.11 99.48 0.71 -15.27 16 19 H -0.26 -13.07 6.64 99.48 0.66 -12.41 16 20 C 0.15 5.51 6.52 86.37 0.56 6.07 16 21 C -0.13 -3.85 5.55 30.67 0.17 -3.68 16 22 N -0.46 -11.91 9.47 -177.76 -1.68 -13.59 16 23 C 0.10 2.16 6.61 40.49 0.27 2.43 16 24 C -0.11 -1.75 9.99 22.38 0.22 -1.53 16 25 C -0.09 -0.89 9.94 22.04 0.22 -0.67 16 26 C -0.10 -0.76 9.96 22.07 0.22 -0.54 16 27 C -0.10 -1.05 9.31 22.31 0.21 -0.84 16 28 C -0.10 -1.77 5.75 -21.22 -0.12 -1.89 16 29 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.10 0.41 6.51 -2.39 -0.02 0.40 16 31 H 0.08 0.68 8.10 -2.39 -0.02 0.66 16 32 H 0.15 3.33 7.60 -2.92 -0.02 3.31 16 33 H 0.42 10.88 7.91 -92.71 -0.73 10.15 16 34 H 0.08 2.71 7.58 -2.39 -0.02 2.70 16 35 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 36 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.05 2.56 4.50 -2.39 -0.01 2.55 16 38 H 0.03 1.36 7.07 -2.38 -0.02 1.34 16 39 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 40 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 41 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 42 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 45 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 46 H 0.16 0.10 8.06 -2.92 -0.02 0.08 16 47 H 0.16 0.61 6.43 -2.91 -0.02 0.59 16 Total: -1.00 -76.47 375.34 1.63 -74.84 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.17 Total: 15.85 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: 5.42 Total: 8.83 kcal Atomic # 7 Polarization: -122.91 SS G_CDS: -5.57 Total: -128.48 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.06 Total: -21.10 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 1.67 Total: 50.05 kcal Total: -76.47 1.63 -74.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003178750.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.352 kcal (2) G-P(sol) polarization free energy of solvation -76.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds