Wall clock time and date at job start Tue Mar 31 2020 22:52:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36614 * 120.92327 * 2 1 4 4 C 1.39277 * 119.90185 * 180.02562 * 3 2 1 5 5 N 1.31141 * 121.77368 * 0.02562 * 4 3 2 6 6 C 1.33626 * 121.39932 * 359.97438 * 5 4 3 7 7 C 1.40758 * 120.84806 * 179.97438 * 6 5 4 8 8 C 1.35702 * 120.11064 * 180.02562 * 7 6 5 9 9 C 1.40630 * 120.92963 * 359.97438 * 8 7 6 10 10 C 1.47768 * 119.80468 * 179.97438 * 9 8 7 11 11 O 1.21570 * 119.99935 * 179.72520 * 10 9 8 12 12 N 1.34773 * 119.99762 * 359.97438 * 10 9 8 13 13 C 1.46501 * 119.99533 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.50101 * 35.06976 * 13 12 10 15 15 C 1.53051 * 109.49506 * 155.16497 * 13 12 10 16 16 C 1.53032 * 109.53688 * 181.31825 * 15 13 12 17 17 C 1.53196 * 109.31466 * 298.63266 * 16 15 13 18 18 N 1.46928 * 108.77431 * 54.63808 * 17 16 15 19 19 C 1.36929 * 120.62994 * 126.41285 * 18 17 16 20 20 H 1.08007 * 120.00181 * 207.66033 * 19 18 17 21 21 C 1.38810 * 120.00489 * 27.66765 * 19 18 17 22 22 N 1.31621 * 119.99531 * 17.35708 * 21 19 18 23 23 Si 1.86795 * 120.00549 * 197.36750 * 21 19 18 24 24 H 1.48497 * 109.47182 * 59.99221 * 23 21 19 25 25 H 1.48500 * 109.47552 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46987 * 299.99571 * 23 21 19 27 27 C 1.46925 * 118.73551 * 306.39485 * 18 17 16 28 28 C 1.38548 * 120.39132 * 0.27845 * 9 8 7 29 29 C 1.40183 * 119.40326 * 359.49290 * 28 9 8 30 30 H 1.08999 * 109.47016 * 89.99949 * 1 2 3 31 31 H 1.08998 * 109.47205 * 210.00145 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00397 * 1 2 3 33 33 H 1.07995 * 120.04863 * 0.04306 * 3 2 1 34 34 H 1.07995 * 119.10780 * 180.02562 * 4 3 2 35 35 H 1.08004 * 119.94763 * 0.04831 * 7 6 5 36 36 H 1.08002 * 119.53663 * 180.02562 * 8 7 6 37 37 H 0.97001 * 120.00388 * 0.02562 * 12 10 9 38 38 H 1.09005 * 109.45640 * 301.33938 * 15 13 12 39 39 H 1.08998 * 109.45488 * 61.29402 * 15 13 12 40 40 H 1.09004 * 109.49862 * 178.68335 * 16 15 13 41 41 H 1.09002 * 109.50259 * 58.58503 * 16 15 13 42 42 H 1.08992 * 109.58587 * 294.84896 * 17 16 15 43 43 H 1.08998 * 109.58406 * 174.42369 * 17 16 15 44 44 H 0.96999 * 119.99954 * 180.02562 * 22 21 19 45 45 H 1.09001 * 109.58677 * 293.81914 * 27 18 17 46 46 H 1.09003 * 109.58753 * 173.39875 * 27 18 17 47 47 H 1.08002 * 120.29500 * 179.73134 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1471 -0.0005 5 7 4.2721 0.0201 -0.0016 6 6 3.6479 -1.1614 -0.0016 7 6 4.3792 -2.3641 -0.0032 8 6 3.7299 -3.5557 -0.0038 9 6 2.3248 -3.6132 -0.0022 10 6 1.6434 -4.9244 -0.0035 11 8 0.4289 -4.9782 0.0030 12 7 2.3683 -6.0605 -0.0066 13 6 1.6927 -7.3604 -0.0072 14 1 0.7776 -7.2946 -0.5957 15 6 2.6177 -8.4165 -0.6166 16 6 1.9007 -9.7681 -0.6479 17 6 1.5584 -10.1933 0.7835 18 7 0.7905 -9.1177 1.4254 19 6 -0.4215 -9.3773 2.0074 20 1 -1.1673 -8.5988 2.0722 21 6 -0.6916 -10.6409 2.5144 22 7 0.2949 -11.4792 2.7522 23 14 -2.4550 -11.1518 2.8591 24 1 -3.2419 -11.0942 1.6011 25 1 -2.4738 -12.5381 3.3912 26 1 -3.0512 -10.2294 3.8586 27 6 1.3480 -7.7583 1.4313 28 6 1.5756 -2.4477 -0.0059 29 6 2.2307 -1.2084 -0.0004 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6850 2.1162 0.0007 34 1 4.1436 2.0812 -0.0001 35 1 5.4590 -2.3385 -0.0037 36 1 4.3003 -4.4728 -0.0046 37 1 3.3374 -6.0175 -0.0077 38 1 2.8844 -8.1233 -1.6321 39 1 3.5218 -8.4988 -0.0134 40 1 2.5514 -10.5147 -1.1034 41 1 0.9837 -9.6802 -1.2305 42 1 2.4775 -10.3696 1.3420 43 1 0.9615 -11.1051 0.7609 44 1 0.1061 -12.3624 3.1061 45 1 2.2501 -7.7360 2.0427 46 1 0.6123 -7.0634 1.8363 47 1 0.4966 -2.4937 -0.0090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007411156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:36 Heat of formation + Delta-G solvation = 34.698737 kcal Electronic energy + Delta-G solvation = -28502.126477 eV Core-core repulsion = 24649.863356 eV Total energy + Delta-G solvation = -3852.263121 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.00 seconds Orbital eigenvalues (eV) -41.28376 -39.74288 -37.60074 -36.73846 -35.04652 -34.36471 -32.51258 -31.08822 -30.64661 -30.45470 -28.76185 -28.05288 -25.28328 -24.86352 -23.90991 -22.31580 -22.04042 -21.29511 -20.67400 -19.52656 -18.35207 -17.96664 -16.94155 -16.71284 -16.11738 -15.58379 -15.11578 -14.79333 -14.67107 -14.57463 -14.38519 -14.08618 -13.87324 -13.83769 -13.48236 -13.37583 -13.17806 -13.08472 -12.81933 -12.41948 -12.39918 -12.01473 -11.87331 -11.81900 -11.69886 -11.09244 -10.89339 -10.77807 -10.51774 -10.27210 -10.24550 -10.02721 -9.90356 -9.82633 -9.64523 -9.57741 -9.13891 -8.85439 -8.50577 -8.38132 -6.66892 -5.77396 -3.19374 -0.05392 0.37429 1.61007 2.23451 3.23221 3.29406 3.41899 3.46418 3.49561 3.84559 3.92954 4.15773 4.26487 4.42619 4.51124 4.61481 4.71958 4.79691 4.88868 5.03358 5.13142 5.17956 5.27735 5.34606 5.38233 5.52556 5.57797 5.61366 5.62925 5.68262 5.71125 5.74788 5.95575 6.04566 6.07641 6.14351 6.19861 6.23512 6.44905 6.52172 6.60758 6.64778 6.68958 6.83533 6.98256 7.36117 7.56926 7.64996 7.68261 7.83856 8.35011 8.47396 9.23126 9.85433 10.41050 11.31361 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.002362 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.284475 B =11850.712058 C =12847.399866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.010 4.010 3 C -0.188 4.188 4 C 0.142 3.858 5 N -0.483 5.483 6 C 0.145 3.855 7 C -0.099 4.099 8 C -0.073 4.073 9 C -0.128 4.128 10 C 0.553 3.447 11 O -0.531 6.531 12 N -0.715 5.715 13 C 0.125 3.875 14 H 0.088 0.912 15 C -0.115 4.115 16 C -0.140 4.140 17 C 0.167 3.833 18 N -0.587 5.587 19 C -0.251 4.251 20 H 0.066 0.934 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.904 3.096 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.142 3.858 28 C -0.029 4.029 29 C -0.113 4.113 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.160 0.840 35 H 0.141 0.859 36 H 0.135 0.865 37 H 0.394 0.606 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.019 0.981 43 H 0.090 0.910 44 H 0.254 0.746 45 H 0.018 0.982 46 H 0.058 0.942 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.399 22.721 -8.358 25.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.018 4.018 3 C -0.208 4.208 4 C -0.030 4.030 5 N -0.192 5.192 6 C 0.023 3.977 7 C -0.118 4.118 8 C -0.094 4.094 9 C -0.131 4.131 10 C 0.339 3.661 11 O -0.409 6.409 12 N -0.366 5.366 13 C 0.020 3.980 14 H 0.106 0.894 15 C -0.153 4.153 16 C -0.179 4.179 17 C 0.041 3.959 18 N -0.310 5.310 19 C -0.380 4.380 20 H 0.084 0.916 21 C -0.196 4.196 22 N -0.549 5.549 23 Si 0.733 3.267 24 H -0.210 1.210 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.015 3.985 28 C -0.049 4.049 29 C -0.115 4.115 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.156 0.844 34 H 0.177 0.823 35 H 0.159 0.841 36 H 0.152 0.848 37 H 0.229 0.771 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.108 0.892 44 H 0.064 0.936 45 H 0.035 0.965 46 H 0.076 0.924 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 8.423 22.353 -8.260 25.275 hybrid contribution -1.133 -0.221 0.239 1.178 sum 7.291 22.132 -8.022 24.644 Atomic orbital electron populations 1.20966 0.89641 1.04141 1.03566 1.20280 0.96892 0.91992 0.92661 1.21765 0.95616 0.98809 1.04622 1.22986 0.91533 0.96463 0.91995 1.68066 1.39902 0.97713 1.13508 1.18991 0.89555 0.92585 0.96534 1.20662 1.00552 0.89746 1.00831 1.20990 0.93107 0.98451 0.96806 1.20078 0.93742 0.93987 1.05305 1.18135 0.87124 0.83794 0.77011 1.90811 1.13263 1.87316 1.49471 1.46075 1.09889 1.06207 1.74399 1.21802 0.95907 0.79657 1.00601 0.89427 1.21685 0.98332 0.96010 0.99300 1.22181 0.99310 0.94692 1.01749 1.20853 0.95114 0.92991 0.86939 1.43994 1.20725 1.02273 1.64017 1.19180 0.89981 0.97059 1.31815 0.91598 1.25020 0.97440 0.98526 0.98649 1.70031 1.29603 1.08046 1.47191 0.86345 0.84758 0.77401 0.78159 1.20973 1.21644 1.20857 1.21181 0.96929 0.88634 0.91798 1.21500 1.00912 0.89666 0.92787 1.18689 0.94108 0.93988 1.04686 0.89791 0.90152 0.90394 0.84385 0.82287 0.84131 0.84776 0.77122 0.93031 0.92193 0.92665 0.92392 0.96279 0.89220 0.93608 0.96454 0.92361 0.83510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.85 9.59 36.00 0.35 -0.50 16 2 C -0.01 -0.09 5.92 -104.22 -0.62 -0.71 16 3 C -0.19 -1.38 9.72 -39.78 -0.39 -1.76 16 4 C 0.14 1.15 11.14 -17.46 -0.19 0.96 16 5 N -0.48 -5.29 10.33 -10.92 -0.11 -5.41 16 6 C 0.14 1.67 6.61 -84.77 -0.56 1.11 16 7 C -0.10 -1.01 9.95 -39.54 -0.39 -1.40 16 8 C -0.07 -0.74 9.44 -39.59 -0.37 -1.11 16 9 C -0.13 -1.61 5.87 -104.98 -0.62 -2.23 16 10 C 0.55 8.62 7.73 -12.37 -0.10 8.52 16 11 O -0.53 -10.38 15.97 5.30 0.08 -10.30 16 12 N -0.72 -10.27 5.03 -54.65 -0.27 -10.54 16 13 C 0.13 2.24 2.60 -67.81 -0.18 2.06 16 14 H 0.09 1.79 7.58 -51.93 -0.39 1.40 16 15 C -0.12 -1.83 5.35 -26.69 -0.14 -1.97 16 16 C -0.14 -2.58 6.08 -26.61 -0.16 -2.74 16 17 C 0.17 3.93 5.31 -3.71 -0.02 3.91 16 18 N -0.59 -14.96 2.99 -172.32 -0.52 -15.48 16 19 C -0.25 -7.07 9.58 -15.06 -0.14 -7.22 16 20 H 0.07 1.87 7.89 -52.48 -0.41 1.46 16 21 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 22 N -0.90 -26.33 11.19 55.49 0.62 -25.71 16 23 Si 0.90 22.12 29.59 -169.99 -5.03 17.09 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 C 0.14 3.11 6.09 -3.71 -0.02 3.09 16 28 C -0.03 -0.35 8.88 -38.74 -0.34 -0.69 16 29 C -0.11 -1.26 5.74 -106.82 -0.61 -1.87 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.59 6.52 -51.93 -0.34 0.25 16 32 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 33 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 34 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 35 H 0.14 1.17 8.06 -52.48 -0.42 0.74 16 36 H 0.13 1.00 6.35 -52.49 -0.33 0.67 16 37 H 0.39 4.31 6.59 -40.82 -0.27 4.04 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.09 2.37 6.04 -51.93 -0.31 2.06 16 44 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 1.37 7.93 -51.93 -0.41 0.96 16 47 H 0.15 1.74 6.00 -52.49 -0.32 1.42 16 LS Contribution 379.42 15.07 5.72 5.72 Total: -1.00 -33.91 379.42 -10.69 -44.59 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -6.57 Total: 2.63 kcal Atomic # 6 Polarization: 2.00 SS G_CDS: -4.60 Total: -2.60 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: -0.28 Total: -57.14 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.08 Total: -10.30 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.91 -10.69 -44.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007411156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.292 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.00 seconds