Wall clock time and date at job start Tue Mar 31 2020 22:52:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36614 * 120.92327 * 2 1 4 4 C 1.39277 * 119.90185 * 180.02562 * 3 2 1 5 5 N 1.31141 * 121.77368 * 0.02562 * 4 3 2 6 6 C 1.33626 * 121.39932 * 359.97438 * 5 4 3 7 7 C 1.40758 * 120.84806 * 179.97438 * 6 5 4 8 8 C 1.35702 * 120.11064 * 180.02562 * 7 6 5 9 9 C 1.40630 * 120.92963 * 359.97438 * 8 7 6 10 10 C 1.47768 * 119.80468 * 179.97438 * 9 8 7 11 11 O 1.21570 * 119.99935 * 179.72520 * 10 9 8 12 12 N 1.34773 * 119.99762 * 359.97438 * 10 9 8 13 13 C 1.46501 * 119.99533 * 179.97438 * 12 10 9 14 14 H 1.08997 * 109.50101 * 35.06976 * 13 12 10 15 15 C 1.53051 * 109.49506 * 155.16497 * 13 12 10 16 16 C 1.53032 * 109.53688 * 181.31825 * 15 13 12 17 17 C 1.53196 * 109.31466 * 298.63266 * 16 15 13 18 18 N 1.46928 * 108.77431 * 54.63808 * 17 16 15 19 19 C 1.36929 * 120.62994 * 126.41285 * 18 17 16 20 20 H 1.08007 * 120.00181 * 207.66033 * 19 18 17 21 21 C 1.38810 * 120.00489 * 27.66765 * 19 18 17 22 22 N 1.31621 * 119.99531 * 17.35708 * 21 19 18 23 23 Si 1.86795 * 120.00549 * 197.36750 * 21 19 18 24 24 H 1.48497 * 109.47182 * 59.99221 * 23 21 19 25 25 H 1.48500 * 109.47552 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46987 * 299.99571 * 23 21 19 27 27 C 1.46925 * 118.73551 * 306.39485 * 18 17 16 28 28 C 1.38548 * 120.39132 * 0.27845 * 9 8 7 29 29 C 1.40183 * 119.40326 * 359.49290 * 28 9 8 30 30 H 1.08999 * 109.47016 * 89.99949 * 1 2 3 31 31 H 1.08998 * 109.47205 * 210.00145 * 1 2 3 32 32 H 1.09001 * 109.46980 * 330.00397 * 1 2 3 33 33 H 1.07995 * 120.04863 * 0.04306 * 3 2 1 34 34 H 1.07995 * 119.10780 * 180.02562 * 4 3 2 35 35 H 1.08004 * 119.94763 * 0.04831 * 7 6 5 36 36 H 1.08002 * 119.53663 * 180.02562 * 8 7 6 37 37 H 0.97001 * 120.00388 * 0.02562 * 12 10 9 38 38 H 1.09005 * 109.45640 * 301.33938 * 15 13 12 39 39 H 1.08998 * 109.45488 * 61.29402 * 15 13 12 40 40 H 1.09004 * 109.49862 * 178.68335 * 16 15 13 41 41 H 1.09002 * 109.50259 * 58.58503 * 16 15 13 42 42 H 1.08992 * 109.58587 * 294.84896 * 17 16 15 43 43 H 1.08998 * 109.58406 * 174.42369 * 17 16 15 44 44 H 0.96999 * 119.99954 * 180.02562 * 22 21 19 45 45 H 1.09001 * 109.58677 * 293.81914 * 27 18 17 46 46 H 1.09003 * 109.58753 * 173.39875 * 27 18 17 47 47 H 1.08002 * 120.29500 * 179.73134 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2090 1.1720 0.0000 4 6 3.6015 1.1471 -0.0005 5 7 4.2721 0.0201 -0.0016 6 6 3.6479 -1.1614 -0.0016 7 6 4.3792 -2.3641 -0.0032 8 6 3.7299 -3.5557 -0.0038 9 6 2.3248 -3.6132 -0.0022 10 6 1.6434 -4.9244 -0.0035 11 8 0.4289 -4.9782 0.0030 12 7 2.3683 -6.0605 -0.0066 13 6 1.6927 -7.3604 -0.0072 14 1 0.7776 -7.2946 -0.5957 15 6 2.6177 -8.4165 -0.6166 16 6 1.9007 -9.7681 -0.6479 17 6 1.5584 -10.1933 0.7835 18 7 0.7905 -9.1177 1.4254 19 6 -0.4215 -9.3773 2.0074 20 1 -1.1673 -8.5988 2.0722 21 6 -0.6916 -10.6409 2.5144 22 7 0.2949 -11.4792 2.7522 23 14 -2.4550 -11.1518 2.8591 24 1 -3.2419 -11.0942 1.6011 25 1 -2.4738 -12.5381 3.3912 26 1 -3.0512 -10.2294 3.8586 27 6 1.3480 -7.7583 1.4313 28 6 1.5756 -2.4477 -0.0059 29 6 2.2307 -1.2084 -0.0004 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6850 2.1162 0.0007 34 1 4.1436 2.0812 -0.0001 35 1 5.4590 -2.3385 -0.0037 36 1 4.3003 -4.4728 -0.0046 37 1 3.3374 -6.0175 -0.0077 38 1 2.8844 -8.1233 -1.6321 39 1 3.5218 -8.4988 -0.0134 40 1 2.5514 -10.5147 -1.1034 41 1 0.9837 -9.6802 -1.2305 42 1 2.4775 -10.3696 1.3420 43 1 0.9615 -11.1051 0.7609 44 1 0.1061 -12.3624 3.1061 45 1 2.2501 -7.7360 2.0427 46 1 0.6123 -7.0634 1.8363 47 1 0.4966 -2.4937 -0.0090 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007411156.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:33 Heat of formation + Delta-G solvation = 13.518908 kcal Electronic energy + Delta-G solvation = -28503.044903 eV Core-core repulsion = 24649.863356 eV Total energy + Delta-G solvation = -3853.181548 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -42.07162 -40.96164 -39.09067 -37.71712 -36.05607 -35.65762 -34.21273 -32.35303 -32.03115 -31.42319 -30.14774 -28.78353 -27.27180 -25.82194 -24.66026 -23.91024 -23.60328 -22.09680 -21.87798 -21.12266 -19.36785 -18.84555 -18.70650 -17.72828 -17.13880 -16.86696 -16.62188 -16.26320 -15.80514 -15.59220 -15.35426 -15.28188 -15.14367 -15.06481 -14.79004 -14.54248 -14.23048 -14.04276 -13.99668 -13.80356 -13.46927 -13.40604 -13.04334 -12.76288 -12.74452 -12.71808 -12.56336 -12.40196 -12.15227 -11.98218 -11.76958 -11.60180 -11.32789 -11.21236 -11.04203 -10.62764 -10.52841 -10.21522 -9.85140 -9.28356 -8.70915 -7.91738 -5.37053 -0.84454 -0.36664 0.82291 1.37838 1.43535 1.45777 1.53249 2.02626 2.27088 2.49544 3.04307 3.22194 3.25801 3.46616 3.54918 3.63216 3.74636 3.78577 3.88314 3.96911 4.01258 4.10240 4.24046 4.26334 4.44666 4.46967 4.49631 4.54992 4.67999 4.73875 4.79761 4.85467 4.89356 4.91251 5.00721 5.01835 5.11325 5.12058 5.14257 5.17007 5.26333 5.32921 5.43039 5.50039 5.54605 5.62000 5.74847 5.75991 6.35375 6.51358 6.87276 7.11240 7.17815 7.81141 8.30969 9.13814 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.002362 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.284475 B =11850.712058 C =12847.399866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.023 4.023 3 C -0.179 4.179 4 C 0.145 3.855 5 N -0.509 5.509 6 C 0.128 3.872 7 C -0.101 4.101 8 C -0.069 4.069 9 C -0.145 4.145 10 C 0.553 3.447 11 O -0.580 6.580 12 N -0.700 5.700 13 C 0.142 3.858 14 H 0.059 0.941 15 C -0.105 4.105 16 C -0.130 4.130 17 C 0.170 3.830 18 N -0.607 5.607 19 C -0.269 4.269 20 H 0.053 0.947 21 C -0.044 4.044 22 N -0.929 5.929 23 Si 0.966 3.034 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.279 1.279 27 C 0.145 3.855 28 C -0.034 4.034 29 C -0.131 4.131 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.100 0.900 33 H 0.175 0.825 34 H 0.195 0.805 35 H 0.160 0.840 36 H 0.162 0.838 37 H 0.415 0.585 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.047 0.953 42 H 0.006 0.994 43 H 0.055 0.945 44 H 0.253 0.747 45 H 0.022 0.978 46 H 0.028 0.972 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.007 24.959 -9.480 28.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.031 4.031 3 C -0.198 4.198 4 C -0.027 4.027 5 N -0.219 5.219 6 C 0.007 3.993 7 C -0.119 4.119 8 C -0.089 4.089 9 C -0.148 4.148 10 C 0.342 3.658 11 O -0.461 6.461 12 N -0.352 5.352 13 C 0.035 3.965 14 H 0.078 0.922 15 C -0.143 4.143 16 C -0.169 4.169 17 C 0.045 3.955 18 N -0.331 5.331 19 C -0.399 4.399 20 H 0.070 0.930 21 C -0.240 4.240 22 N -0.574 5.574 23 Si 0.793 3.207 24 H -0.205 1.205 25 H -0.212 1.212 26 H -0.205 1.205 27 C 0.018 3.982 28 C -0.053 4.053 29 C -0.133 4.133 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.119 0.881 33 H 0.192 0.808 34 H 0.212 0.788 35 H 0.178 0.822 36 H 0.179 0.821 37 H 0.253 0.747 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.024 0.976 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.040 0.960 46 H 0.047 0.953 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 10.085 24.616 -9.399 28.213 hybrid contribution -1.622 -0.708 0.627 1.878 sum 8.463 23.907 -8.773 26.835 Atomic orbital electron populations 1.21007 0.88446 1.04550 1.04169 1.20602 0.97960 0.91877 0.92664 1.22171 0.95477 0.99629 1.02560 1.23693 0.92327 0.96955 0.89693 1.68130 1.40526 0.98190 1.15014 1.19304 0.89819 0.93511 0.96643 1.20914 1.01478 0.89329 1.00210 1.21144 0.91825 0.99724 0.96228 1.19886 0.94922 0.92187 1.07802 1.18625 0.86623 0.84964 0.75631 1.90784 1.15537 1.88057 1.51747 1.45802 1.10829 1.04692 1.73868 1.21309 0.96082 0.81884 0.97195 0.92239 1.21627 0.97738 0.93326 1.01588 1.22017 0.99936 0.97127 0.97831 1.20744 0.93449 0.91462 0.89839 1.44223 1.20452 1.03918 1.64497 1.19355 0.91175 0.97191 1.32213 0.92967 1.25724 1.01097 0.98399 0.98780 1.70161 1.31241 1.08097 1.47898 0.85377 0.80311 0.76975 0.78013 1.20521 1.21174 1.20485 1.21210 0.95879 0.86512 0.94619 1.21540 1.00670 0.90356 0.92776 1.18853 0.94510 0.94349 1.05607 0.89033 0.91575 0.88141 0.80801 0.78806 0.82225 0.82102 0.74666 0.89303 0.90346 0.89566 0.93425 0.97575 0.92654 0.93813 0.96035 0.95297 0.84395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.55 9.59 71.23 0.68 -0.87 16 2 C -0.02 -0.38 5.92 -19.60 -0.12 -0.50 16 3 C -0.18 -2.08 9.72 22.14 0.22 -1.87 16 4 C 0.14 1.92 11.14 85.05 0.95 2.87 16 5 N -0.51 -10.17 10.33 -188.46 -1.95 -12.12 16 6 C 0.13 2.81 6.61 40.37 0.27 3.08 16 7 C -0.10 -1.90 9.95 22.30 0.22 -1.68 16 8 C -0.07 -1.30 9.44 22.27 0.21 -1.09 16 9 C -0.14 -3.66 5.87 -20.10 -0.12 -3.78 16 10 C 0.55 17.60 7.73 86.76 0.67 18.27 16 11 O -0.58 -23.96 15.97 -3.94 -0.06 -24.02 16 12 N -0.70 -19.55 5.03 -445.10 -2.24 -21.79 16 13 C 0.14 5.03 2.60 45.07 0.12 5.15 16 14 H 0.06 2.49 7.58 -2.39 -0.02 2.47 16 15 C -0.10 -3.07 5.35 30.62 0.16 -2.90 16 16 C -0.13 -4.63 6.08 30.67 0.19 -4.44 16 17 C 0.17 8.16 5.31 86.36 0.46 8.62 16 18 N -0.61 -32.00 2.99 -699.11 -2.09 -34.09 16 19 C -0.27 -15.80 9.58 84.03 0.81 -15.00 16 20 H 0.05 3.13 7.89 -2.91 -0.02 3.10 16 21 C -0.04 -2.55 4.91 84.86 0.42 -2.13 16 22 N -0.93 -55.52 11.19 21.65 0.24 -55.27 16 23 Si 0.97 46.58 29.59 68.60 2.03 48.61 16 24 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 27 C 0.14 6.52 6.09 86.36 0.53 7.05 16 28 C -0.03 -0.84 8.88 22.82 0.20 -0.63 16 29 C -0.13 -2.87 5.74 -21.29 -0.12 -3.00 16 30 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.01 6.52 -2.39 -0.02 0.99 16 32 H 0.10 0.76 8.10 -2.39 -0.02 0.74 16 33 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 34 H 0.20 1.05 8.06 -2.91 -0.02 1.03 16 35 H 0.16 2.29 8.06 -2.91 -0.02 2.27 16 36 H 0.16 1.97 6.35 -2.91 -0.02 1.95 16 37 H 0.41 8.09 6.59 -92.71 -0.61 7.48 16 38 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.06 3.02 6.04 -2.39 -0.01 3.00 16 44 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 45 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.03 1.43 7.93 -2.39 -0.02 1.41 16 47 H 0.14 3.54 6.00 -2.91 -0.02 3.53 16 Total: -1.00 -78.33 379.42 2.05 -76.27 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.39 Total: 15.26 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 5.74 Total: 7.15 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -6.04 Total: -123.27 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.06 Total: -24.02 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -78.33 2.05 -76.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007411156.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.792 kcal (2) G-P(sol) polarization free energy of solvation -78.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds