Wall clock time and date at job start Tue Mar 31 2020 22:29:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30826 * 119.23048 * 2 1 4 4 C 1.33791 * 121.71676 * 180.24295 * 3 2 1 5 5 C 1.40533 * 120.82446 * 179.74787 * 4 3 2 6 6 C 1.36132 * 119.81745 * 180.02562 * 5 4 3 7 7 C 1.39348 * 121.09052 * 359.97438 * 6 5 4 8 8 C 1.36136 * 120.83940 * 0.02562 * 7 6 5 9 9 C 1.40556 * 119.61883 * 359.96045 * 8 7 6 10 10 C 1.40491 * 121.22594 * 180.02562 * 9 8 7 11 11 C 1.39043 * 117.96133 * 180.02562 * 10 9 8 12 12 C 1.47765 * 120.26569 * 179.97438 * 11 10 9 13 13 O 1.21561 * 119.99702 * 173.12101 * 12 11 10 14 14 N 1.34777 * 120.00029 * 353.11837 * 12 11 10 15 15 C 1.46494 * 119.99922 * 180.02562 * 14 12 11 16 16 H 1.09008 * 109.52338 * 325.07654 * 15 14 12 17 17 C 1.53042 * 109.49781 * 205.00195 * 15 14 12 18 18 C 1.53041 * 109.53821 * 178.68494 * 17 15 14 19 19 C 1.53187 * 109.31537 * 61.36453 * 18 17 15 20 20 N 1.46932 * 108.77268 * 305.36669 * 19 18 17 21 21 C 1.36938 * 120.62664 * 233.58876 * 20 19 18 22 22 H 1.07999 * 120.00350 * 152.55455 * 21 20 19 23 23 C 1.38816 * 120.00074 * 332.54192 * 21 20 19 24 24 N 1.31619 * 119.99444 * 143.60298 * 23 21 20 25 25 Si 1.86800 * 120.00082 * 323.60831 * 23 21 20 26 26 H 1.48493 * 109.47274 * 269.99526 * 25 23 21 27 27 H 1.48505 * 109.47054 * 149.99591 * 25 23 21 28 28 H 1.48495 * 109.47145 * 29.99785 * 25 23 21 29 29 C 1.46915 * 118.74073 * 53.85729 * 20 19 18 30 30 H 1.08996 * 109.47502 * 263.78338 * 1 2 3 31 31 H 1.09001 * 109.47321 * 23.78640 * 1 2 3 32 32 H 1.09007 * 109.47271 * 143.78301 * 1 2 3 33 33 H 1.08000 * 120.08797 * 0.04115 * 5 4 3 34 34 H 1.07999 * 119.45389 * 179.97438 * 6 5 4 35 35 H 1.07996 * 119.57818 * 180.02562 * 7 6 5 36 36 H 1.07995 * 120.19244 * 180.02562 * 8 7 6 37 37 H 1.08007 * 121.01758 * 359.97438 * 10 9 8 38 38 H 0.97000 * 119.99947 * 0.02562 * 14 12 11 39 39 H 1.09003 * 109.46221 * 58.65952 * 17 15 14 40 40 H 1.08997 * 109.44556 * 298.69651 * 17 15 14 41 41 H 1.09004 * 109.49251 * 301.40694 * 18 17 15 42 42 H 1.08999 * 109.49578 * 181.31440 * 18 17 15 43 43 H 1.09004 * 109.58870 * 185.58258 * 19 18 17 44 44 H 1.08992 * 109.70398 * 65.21949 * 19 18 17 45 45 H 0.96999 * 120.00635 * 354.90811 * 24 23 21 46 46 H 1.09005 * 109.58744 * 65.93044 * 29 20 19 47 47 H 1.09004 * 109.58767 * 186.34773 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4824 1.1997 -0.0048 5 6 4.1495 2.4366 -0.0100 6 6 5.5104 2.4718 -0.0154 7 6 6.2605 1.2974 -0.0153 8 6 5.6512 0.0801 -0.0104 9 6 4.2476 0.0058 -0.0044 10 6 3.5837 -1.2323 0.0013 11 6 2.1933 -1.2266 0.0065 12 6 1.4433 -2.4998 0.0121 13 8 0.2348 -2.4926 0.1427 14 7 2.0992 -3.6689 -0.1276 15 6 1.3556 -4.9310 -0.1226 16 1 0.5131 -4.8548 0.5649 17 6 2.2791 -6.0662 0.3253 18 6 1.4946 -7.3798 0.3624 19 6 0.9793 -7.7021 -1.0437 20 7 0.2094 -6.5532 -1.5400 21 6 -1.0701 -6.7169 -1.9996 22 1 -1.7727 -5.8985 -1.9443 23 6 -1.4642 -7.9348 -2.5367 24 7 -2.6844 -8.3819 -2.3282 25 14 -0.2627 -8.9389 -3.5554 26 1 -0.3815 -8.5525 -4.9842 27 1 -0.5734 -10.3833 -3.4058 28 1 1.1219 -8.6793 -3.0858 29 6 0.8406 -5.2265 -1.5394 30 1 -0.3634 -0.1113 1.0216 31 1 -0.3634 0.9404 -0.4145 32 1 -0.3634 -0.8292 -0.6072 33 1 3.5840 3.3567 -0.0095 34 1 6.0169 3.4256 -0.0198 35 1 7.3390 1.3538 -0.0193 36 1 6.2428 -0.8234 -0.0099 37 1 4.1365 -2.1602 0.0009 38 1 3.0636 -3.6745 -0.2314 39 1 2.6679 -5.8472 1.3198 40 1 3.1080 -6.1580 -0.3765 41 1 0.6509 -7.2804 1.0453 42 1 2.1469 -8.1835 0.7038 43 1 0.3378 -8.5825 -1.0050 44 1 1.8213 -7.8924 -1.7091 45 1 -3.2843 -7.8981 -1.7392 46 1 1.6731 -5.2175 -2.2430 47 1 0.1076 -4.4730 -1.8279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007447133.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:41 Heat of formation + Delta-G solvation = 44.789129 kcal Electronic energy + Delta-G solvation = -28880.612770 eV Core-core repulsion = 25028.787201 eV Total energy + Delta-G solvation = -3851.825569 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.33498 -39.72514 -37.89781 -37.09747 -34.74772 -33.84605 -32.57853 -32.04115 -30.79429 -30.72194 -29.01300 -27.85653 -25.08208 -24.98668 -22.96848 -22.74652 -22.30323 -21.73159 -20.69339 -19.77475 -18.58738 -17.75093 -17.27411 -17.01866 -15.96144 -15.72633 -15.45251 -15.02305 -14.88017 -14.66676 -14.43930 -14.08353 -13.85743 -13.74779 -13.62197 -13.43755 -13.15902 -12.99251 -12.82024 -12.42243 -12.21578 -12.10214 -12.00126 -11.79356 -11.59838 -11.58579 -11.07378 -10.85250 -10.66092 -10.62095 -10.16286 -10.04538 -9.96660 -9.61430 -9.46227 -9.25215 -9.10996 -8.90682 -8.60556 -8.22855 -6.99620 -6.34898 -3.22817 -0.11702 0.35288 1.51846 2.33285 3.06074 3.14683 3.50703 3.57876 3.71303 3.78975 3.91610 4.15621 4.27977 4.36275 4.42724 4.66627 4.71908 4.77653 4.88038 5.00406 5.07282 5.17268 5.26911 5.29623 5.38754 5.43817 5.50077 5.54523 5.61100 5.75322 5.81766 5.82542 5.92122 5.95307 6.01738 6.02086 6.07696 6.23753 6.30267 6.32392 6.42665 6.46457 6.55364 6.61598 6.76659 6.79137 6.97304 7.50822 7.66765 8.09631 8.24396 8.47482 9.05886 9.65721 10.24619 11.05802 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019713 B = 0.002544 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.066957 B =11005.664941 C =11644.425690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.215 3.785 3 N -0.483 5.483 4 C 0.149 3.851 5 C -0.101 4.101 6 C -0.092 4.092 7 C -0.125 4.125 8 C -0.085 4.085 9 C -0.120 4.120 10 C -0.017 4.017 11 C -0.180 4.180 12 C 0.558 3.442 13 O -0.517 6.517 14 N -0.717 5.717 15 C 0.126 3.874 16 H 0.091 0.909 17 C -0.115 4.115 18 C -0.135 4.135 19 C 0.139 3.861 20 N -0.594 5.594 21 C -0.361 4.361 22 H 0.066 0.934 23 C 0.004 3.996 24 N -0.897 5.897 25 Si 1.015 2.985 26 H -0.298 1.298 27 H -0.294 1.294 28 H -0.270 1.270 29 C 0.141 3.859 30 H 0.085 0.915 31 H 0.069 0.931 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.144 0.856 38 H 0.392 0.608 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.068 0.932 44 H 0.031 0.969 45 H 0.268 0.732 46 H 0.019 0.981 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.450 17.765 7.135 28.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.062 3.938 3 N -0.192 5.192 4 C 0.027 3.973 5 C -0.119 4.119 6 C -0.112 4.112 7 C -0.143 4.143 8 C -0.104 4.104 9 C -0.122 4.122 10 C -0.043 4.043 11 C -0.185 4.185 12 C 0.343 3.657 13 O -0.394 6.394 14 N -0.368 5.368 15 C 0.021 3.979 16 H 0.109 0.891 17 C -0.154 4.154 18 C -0.175 4.175 19 C 0.013 3.987 20 N -0.318 5.318 21 C -0.489 4.489 22 H 0.083 0.917 23 C -0.200 4.200 24 N -0.534 5.534 25 Si 0.844 3.156 26 H -0.226 1.226 27 H -0.220 1.220 28 H -0.196 1.196 29 C 0.014 3.986 30 H 0.104 0.896 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.155 0.845 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.162 0.838 38 H 0.226 0.774 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.086 0.914 44 H 0.048 0.952 45 H 0.078 0.922 46 H 0.037 0.963 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.252 17.224 6.317 26.594 hybrid contribution 1.024 0.635 0.771 1.431 sum 20.277 17.859 7.089 27.934 Atomic orbital electron populations 1.21140 0.87074 1.04204 1.04555 1.21647 0.97805 0.86148 0.88182 1.67936 1.08137 1.28171 1.14975 1.19035 0.89238 0.93023 0.95959 1.20834 0.94224 0.96445 1.00423 1.20978 0.93689 0.98858 0.97681 1.20923 1.00443 0.92285 1.00694 1.21046 0.92419 0.98735 0.98214 1.18767 0.94965 0.93621 1.04816 1.21985 0.93233 0.97641 0.91472 1.20936 0.94036 0.95622 1.07901 1.17913 0.87295 0.83151 0.77302 1.90790 1.13322 1.86604 1.48654 1.46058 1.10619 1.06311 1.73777 1.21867 0.94589 0.80382 1.01085 0.89079 1.21678 0.98024 0.95421 1.00244 1.22071 0.99344 0.95304 1.00765 1.21435 0.94832 0.91313 0.91089 1.44293 1.13924 1.01547 1.72052 1.20066 0.85935 1.01312 1.41573 0.91672 1.26111 0.99142 0.95918 0.98847 1.70871 1.08976 1.36948 1.36592 0.84667 0.77072 0.75935 0.77920 1.22638 1.22045 1.19598 1.21323 0.96128 0.89348 0.91850 0.89642 0.91178 0.87432 0.84545 0.85163 0.85347 0.84990 0.83839 0.77366 0.92620 0.92129 0.91722 0.92272 0.91408 0.95168 0.92218 0.96347 0.91875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.48 8.82 36.00 0.32 -1.17 16 2 C 0.22 2.92 6.82 -82.15 -0.56 2.36 16 3 N -0.48 -6.47 10.20 -6.94 -0.07 -6.54 16 4 C 0.15 1.75 6.61 -84.79 -0.56 1.19 16 5 C -0.10 -0.92 9.97 -39.47 -0.39 -1.31 16 6 C -0.09 -0.63 9.94 -39.93 -0.40 -1.02 16 7 C -0.13 -0.81 9.96 -39.92 -0.40 -1.20 16 8 C -0.09 -0.63 9.77 -39.46 -0.39 -1.02 16 9 C -0.12 -1.22 5.74 -106.81 -0.61 -1.83 16 10 C -0.02 -0.17 9.38 -38.43 -0.36 -0.53 16 11 C -0.18 -2.29 5.89 -104.83 -0.62 -2.90 16 12 C 0.56 8.25 7.65 -12.37 -0.09 8.16 16 13 O -0.52 -9.45 12.99 5.31 0.07 -9.38 16 14 N -0.72 -9.49 5.03 -54.44 -0.27 -9.76 16 15 C 0.13 2.09 2.62 -67.59 -0.18 1.91 16 16 H 0.09 1.78 7.58 -51.92 -0.39 1.39 16 17 C -0.12 -1.65 5.35 -26.69 -0.14 -1.79 16 18 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 19 C 0.14 2.92 4.37 -3.71 -0.02 2.91 16 20 N -0.59 -14.19 2.71 -172.06 -0.47 -14.65 16 21 C -0.36 -10.22 9.71 -15.06 -0.15 -10.36 16 22 H 0.07 2.02 8.06 -52.49 -0.42 1.59 16 23 C 0.00 0.12 4.81 -17.43 -0.08 0.03 16 24 N -0.90 -27.57 13.70 55.49 0.76 -26.81 16 25 Si 1.01 25.05 26.99 -169.99 -4.59 20.46 16 26 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.29 -7.32 7.11 56.52 0.40 -6.91 16 28 H -0.27 -6.03 4.72 56.52 0.27 -5.76 16 29 C 0.14 2.88 6.12 -3.49 -0.02 2.86 16 30 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.11 1.61 5.82 -51.92 -0.30 1.30 16 33 H 0.14 1.09 8.06 -52.49 -0.42 0.66 16 34 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 35 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.14 0.95 6.54 -52.48 -0.34 0.60 16 38 H 0.39 3.81 6.72 -40.82 -0.27 3.54 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 1.56 5.79 -51.93 -0.30 1.26 16 44 H 0.03 0.62 6.60 -51.93 -0.34 0.28 16 45 H 0.27 8.21 8.73 -40.82 -0.36 7.85 16 46 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 1.43 7.93 -51.93 -0.41 1.01 16 LS Contribution 373.16 15.07 5.62 5.62 Total: -1.00 -33.75 373.16 -10.49 -44.24 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -6.73 Total: 2.97 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -4.81 Total: -6.15 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.05 Total: -57.77 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.07 Total: -9.38 kcal Atomic # 14 Polarization: 25.05 SS G_CDS: -4.59 Total: 20.46 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.75 -10.49 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007447133.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.026 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds