Wall clock time and date at job start Tue Mar 31 2020 22:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30826 * 119.23048 * 2 1 4 4 C 1.33791 * 121.71676 * 180.24295 * 3 2 1 5 5 C 1.40533 * 120.82446 * 179.74787 * 4 3 2 6 6 C 1.36132 * 119.81745 * 180.02562 * 5 4 3 7 7 C 1.39348 * 121.09052 * 359.97438 * 6 5 4 8 8 C 1.36136 * 120.83940 * 0.02562 * 7 6 5 9 9 C 1.40556 * 119.61883 * 359.96045 * 8 7 6 10 10 C 1.40491 * 121.22594 * 180.02562 * 9 8 7 11 11 C 1.39043 * 117.96133 * 180.02562 * 10 9 8 12 12 C 1.47765 * 120.26569 * 179.97438 * 11 10 9 13 13 O 1.21561 * 119.99702 * 173.12101 * 12 11 10 14 14 N 1.34777 * 120.00029 * 353.11837 * 12 11 10 15 15 C 1.46494 * 119.99922 * 180.02562 * 14 12 11 16 16 H 1.09008 * 109.52338 * 325.07654 * 15 14 12 17 17 C 1.53042 * 109.49781 * 205.00195 * 15 14 12 18 18 C 1.53041 * 109.53821 * 178.68494 * 17 15 14 19 19 C 1.53187 * 109.31537 * 61.36453 * 18 17 15 20 20 N 1.46932 * 108.77268 * 305.36669 * 19 18 17 21 21 C 1.36938 * 120.62664 * 233.58876 * 20 19 18 22 22 H 1.07999 * 120.00350 * 152.55455 * 21 20 19 23 23 C 1.38816 * 120.00074 * 332.54192 * 21 20 19 24 24 N 1.31619 * 119.99444 * 143.60298 * 23 21 20 25 25 Si 1.86800 * 120.00082 * 323.60831 * 23 21 20 26 26 H 1.48493 * 109.47274 * 269.99526 * 25 23 21 27 27 H 1.48505 * 109.47054 * 149.99591 * 25 23 21 28 28 H 1.48495 * 109.47145 * 29.99785 * 25 23 21 29 29 C 1.46915 * 118.74073 * 53.85729 * 20 19 18 30 30 H 1.08996 * 109.47502 * 263.78338 * 1 2 3 31 31 H 1.09001 * 109.47321 * 23.78640 * 1 2 3 32 32 H 1.09007 * 109.47271 * 143.78301 * 1 2 3 33 33 H 1.08000 * 120.08797 * 0.04115 * 5 4 3 34 34 H 1.07999 * 119.45389 * 179.97438 * 6 5 4 35 35 H 1.07996 * 119.57818 * 180.02562 * 7 6 5 36 36 H 1.07995 * 120.19244 * 180.02562 * 8 7 6 37 37 H 1.08007 * 121.01758 * 359.97438 * 10 9 8 38 38 H 0.97000 * 119.99947 * 0.02562 * 14 12 11 39 39 H 1.09003 * 109.46221 * 58.65952 * 17 15 14 40 40 H 1.08997 * 109.44556 * 298.69651 * 17 15 14 41 41 H 1.09004 * 109.49251 * 301.40694 * 18 17 15 42 42 H 1.08999 * 109.49578 * 181.31440 * 18 17 15 43 43 H 1.09004 * 109.58870 * 185.58258 * 19 18 17 44 44 H 1.08992 * 109.70398 * 65.21949 * 19 18 17 45 45 H 0.96999 * 120.00635 * 354.90811 * 24 23 21 46 46 H 1.09005 * 109.58744 * 65.93044 * 29 20 19 47 47 H 1.09004 * 109.58767 * 186.34773 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1458 1.1417 0.0000 4 6 3.4824 1.1997 -0.0048 5 6 4.1495 2.4366 -0.0100 6 6 5.5104 2.4718 -0.0154 7 6 6.2605 1.2974 -0.0153 8 6 5.6512 0.0801 -0.0104 9 6 4.2476 0.0058 -0.0044 10 6 3.5837 -1.2323 0.0013 11 6 2.1933 -1.2266 0.0065 12 6 1.4433 -2.4998 0.0121 13 8 0.2348 -2.4926 0.1427 14 7 2.0992 -3.6689 -0.1276 15 6 1.3556 -4.9310 -0.1226 16 1 0.5131 -4.8548 0.5649 17 6 2.2791 -6.0662 0.3253 18 6 1.4946 -7.3798 0.3624 19 6 0.9793 -7.7021 -1.0437 20 7 0.2094 -6.5532 -1.5400 21 6 -1.0701 -6.7169 -1.9996 22 1 -1.7727 -5.8985 -1.9443 23 6 -1.4642 -7.9348 -2.5367 24 7 -2.6844 -8.3819 -2.3282 25 14 -0.2627 -8.9389 -3.5554 26 1 -0.3815 -8.5525 -4.9842 27 1 -0.5734 -10.3833 -3.4058 28 1 1.1219 -8.6793 -3.0858 29 6 0.8406 -5.2265 -1.5394 30 1 -0.3634 -0.1113 1.0216 31 1 -0.3634 0.9404 -0.4145 32 1 -0.3634 -0.8292 -0.6072 33 1 3.5840 3.3567 -0.0095 34 1 6.0169 3.4256 -0.0198 35 1 7.3390 1.3538 -0.0193 36 1 6.2428 -0.8234 -0.0099 37 1 4.1365 -2.1602 0.0009 38 1 3.0636 -3.6745 -0.2314 39 1 2.6679 -5.8472 1.3198 40 1 3.1080 -6.1580 -0.3765 41 1 0.6509 -7.2804 1.0453 42 1 2.1469 -8.1835 0.7038 43 1 0.3378 -8.5825 -1.0050 44 1 1.8213 -7.8924 -1.7091 45 1 -3.2843 -7.8981 -1.7392 46 1 1.6731 -5.2175 -2.2430 47 1 0.1076 -4.4730 -1.8279 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007447133.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:40 Heat of formation + Delta-G solvation = 22.069627 kcal Electronic energy + Delta-G solvation = -28881.597962 eV Core-core repulsion = 25028.787201 eV Total energy + Delta-G solvation = -3852.810761 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.18661 -40.83759 -39.22914 -38.02622 -36.16758 -34.93015 -34.16024 -32.88221 -32.59132 -31.62686 -30.24975 -28.77156 -26.89325 -25.93026 -24.17066 -23.62824 -23.49211 -23.02795 -21.87203 -21.31124 -19.55708 -19.25400 -18.60330 -17.89379 -17.07149 -16.75090 -16.60616 -16.39338 -15.99845 -15.58304 -15.56269 -15.46076 -15.41229 -14.98707 -14.80576 -14.43780 -14.35388 -14.06297 -13.97354 -13.96062 -13.60938 -13.41715 -13.16406 -12.71547 -12.63836 -12.51559 -12.42614 -12.36601 -12.02807 -11.77576 -11.66818 -11.62527 -11.37843 -11.16585 -11.02848 -10.54523 -10.49150 -10.22053 -9.75727 -9.27315 -9.02021 -8.60757 -5.45400 -0.84754 -0.43657 0.82557 1.49308 1.51283 1.58419 1.77708 1.94736 2.17867 2.59876 2.95158 3.01936 3.09907 3.37301 3.48585 3.52794 3.59587 3.77771 3.84350 4.04756 4.05111 4.15308 4.21670 4.31252 4.36492 4.37972 4.46087 4.54333 4.63681 4.66987 4.72338 4.76505 4.80135 4.89769 4.95667 5.02715 5.04944 5.07555 5.13351 5.21302 5.23813 5.35789 5.38449 5.44479 5.48520 5.55502 5.82453 5.86465 6.23832 6.46168 6.80077 6.90934 7.15961 7.60861 8.11156 8.74923 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.019713 B = 0.002544 C = 0.002404 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.066957 B =11005.664941 C =11644.425690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.193 3.807 3 N -0.506 5.506 4 C 0.122 3.878 5 C -0.128 4.128 6 C -0.074 4.074 7 C -0.121 4.121 8 C -0.082 4.082 9 C -0.134 4.134 10 C 0.007 3.993 11 C -0.205 4.205 12 C 0.557 3.443 13 O -0.565 6.565 14 N -0.699 5.699 15 C 0.140 3.860 16 H 0.051 0.949 17 C -0.105 4.105 18 C -0.130 4.130 19 C 0.130 3.870 20 N -0.611 5.611 21 C -0.355 4.355 22 H 0.012 0.988 23 C -0.050 4.050 24 N -0.934 5.934 25 Si 1.070 2.930 26 H -0.299 1.299 27 H -0.295 1.295 28 H -0.226 1.226 29 C 0.142 3.858 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.167 0.833 37 H 0.184 0.816 38 H 0.415 0.585 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.039 0.961 42 H 0.099 0.901 43 H 0.042 0.958 44 H 0.054 0.946 45 H 0.250 0.750 46 H 0.043 0.957 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.589 17.729 7.471 33.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.040 3.960 3 N -0.215 5.215 4 C 0.001 3.999 5 C -0.147 4.147 6 C -0.094 4.094 7 C -0.139 4.139 8 C -0.101 4.101 9 C -0.136 4.136 10 C -0.018 4.018 11 C -0.210 4.210 12 C 0.345 3.655 13 O -0.445 6.445 14 N -0.351 5.351 15 C 0.034 3.966 16 H 0.069 0.931 17 C -0.143 4.143 18 C -0.169 4.169 19 C 0.006 3.994 20 N -0.337 5.337 21 C -0.484 4.484 22 H 0.030 0.970 23 C -0.247 4.247 24 N -0.573 5.573 25 Si 0.894 3.106 26 H -0.228 1.228 27 H -0.222 1.222 28 H -0.149 1.149 29 C 0.015 3.985 30 H 0.097 0.903 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.154 0.846 34 H 0.179 0.821 35 H 0.183 0.817 36 H 0.185 0.815 37 H 0.202 0.798 38 H 0.254 0.746 39 H 0.108 0.892 40 H 0.111 0.889 41 H 0.058 0.942 42 H 0.118 0.882 43 H 0.061 0.939 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 26.478 17.222 6.676 32.284 hybrid contribution -1.091 0.901 0.705 1.581 sum 25.387 18.123 7.381 32.054 Atomic orbital electron populations 1.20954 0.88180 1.03337 1.03721 1.21576 0.97571 0.87079 0.89774 1.67869 1.09687 1.28097 1.15872 1.19521 0.88824 0.94937 0.96601 1.21008 0.95548 0.95719 1.02416 1.21432 0.92659 1.00832 0.94440 1.21422 1.02291 0.91522 0.98622 1.21461 0.90994 1.00752 0.96863 1.19046 0.96501 0.92902 1.05169 1.22382 0.91836 0.99342 0.88286 1.20643 0.95285 0.93735 1.11363 1.18305 0.86851 0.84190 0.76149 1.90782 1.15652 1.87303 1.50743 1.45721 1.11492 1.04637 1.73269 1.21399 0.94858 0.82991 0.97367 0.93062 1.21650 0.97444 0.92189 1.02976 1.21980 0.99601 0.98206 0.97116 1.21610 0.94468 0.89216 0.94132 1.44341 1.12871 1.03825 1.72635 1.19816 0.87484 0.99864 1.41278 0.96962 1.27409 1.00080 0.97701 0.99556 1.71005 1.10201 1.37801 1.38272 0.83976 0.77034 0.73991 0.75614 1.22755 1.22203 1.14933 1.21369 0.95484 0.86641 0.94967 0.90263 0.90622 0.89863 0.84561 0.82067 0.81726 0.81524 0.79846 0.74624 0.89222 0.88933 0.94161 0.88242 0.93911 0.92863 0.94145 0.93896 0.96036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.12 8.82 71.23 0.63 -2.50 16 2 C 0.19 5.58 6.82 43.27 0.30 5.88 16 3 N -0.51 -14.09 10.20 -175.86 -1.79 -15.89 16 4 C 0.12 2.76 6.61 40.29 0.27 3.03 16 5 C -0.13 -2.15 9.97 22.34 0.22 -1.93 16 6 C -0.07 -0.71 9.94 22.05 0.22 -0.49 16 7 C -0.12 -0.89 9.96 22.05 0.22 -0.67 16 8 C -0.08 -0.79 9.77 22.35 0.22 -0.57 16 9 C -0.13 -2.34 5.74 -21.28 -0.12 -2.46 16 10 C 0.01 0.13 9.38 23.01 0.22 0.34 16 11 C -0.20 -5.23 5.89 -20.00 -0.12 -5.34 16 12 C 0.56 16.94 7.65 86.76 0.66 17.60 16 13 O -0.56 -22.58 12.99 -3.91 -0.05 -22.63 16 14 N -0.70 -17.27 5.03 -444.43 -2.23 -19.51 16 15 C 0.14 4.52 2.62 45.21 0.12 4.64 16 16 H 0.05 2.09 7.58 -2.38 -0.02 2.07 16 17 C -0.10 -2.51 5.35 30.62 0.16 -2.35 16 18 C -0.13 -3.92 6.08 30.67 0.19 -3.73 16 19 C 0.13 5.18 4.37 86.36 0.38 5.56 16 20 N -0.61 -29.55 2.71 -698.28 -1.89 -31.44 16 21 C -0.36 -21.26 9.71 84.03 0.82 -20.45 16 22 H 0.01 0.85 8.06 -2.91 -0.02 0.83 16 23 C -0.05 -2.99 4.81 84.86 0.41 -2.58 16 24 N -0.93 -60.50 13.70 21.65 0.30 -60.20 16 25 Si 1.07 50.93 26.99 68.60 1.85 52.79 16 26 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 27 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 28 H -0.23 -9.03 4.72 99.48 0.47 -8.56 16 29 C 0.14 5.84 6.12 86.51 0.53 6.37 16 30 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 31 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.08 2.87 5.82 -2.38 -0.01 2.86 16 33 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 34 H 0.16 0.53 8.06 -2.91 -0.02 0.51 16 35 H 0.17 0.10 8.06 -2.91 -0.02 0.08 16 36 H 0.17 0.44 8.06 -2.91 -0.02 0.42 16 37 H 0.18 1.42 6.54 -2.91 -0.02 1.40 16 38 H 0.42 6.24 6.72 -92.71 -0.62 5.62 16 39 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.04 1.91 5.79 -2.38 -0.01 1.90 16 44 H 0.05 1.91 6.60 -2.39 -0.02 1.89 16 45 H 0.25 16.53 8.73 -92.71 -0.81 15.72 16 46 H 0.04 1.57 8.14 -2.38 -0.02 1.55 16 47 H 0.02 1.03 7.93 -2.38 -0.02 1.01 16 Total: -1.00 -84.29 373.16 1.58 -82.71 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.10 Total: 13.82 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 5.31 Total: 0.35 kcal Atomic # 7 Polarization: -121.41 SS G_CDS: -5.63 Total: -127.03 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 14 Polarization: 50.93 SS G_CDS: 1.85 Total: 52.79 kcal Total: -84.29 1.58 -82.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007447133.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.777 kcal (2) G-P(sol) polarization free energy of solvation -84.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds