Wall clock time and date at job start Tue Mar 31 2020 22:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39226 * 119.15397 * 2 1 4 4 C 1.36639 * 119.90379 * 180.02562 * 3 2 1 5 5 C 1.40794 * 118.15596 * 0.02562 * 4 3 2 6 6 C 1.40473 * 121.25515 * 180.02562 * 5 4 3 7 7 C 1.36319 * 120.08434 * 180.02562 * 6 5 4 8 8 C 1.38909 * 121.05391 * 359.67285 * 7 6 5 9 9 C 1.38708 * 120.72867 * 0.63172 * 8 7 6 10 10 C 1.47433 * 120.33024 * 179.67314 * 9 8 7 11 11 O 1.21597 * 119.99879 * 179.72307 * 10 9 8 12 12 N 1.34776 * 120.00104 * 359.72782 * 10 9 8 13 13 C 1.46498 * 119.99822 * 180.27460 * 12 10 9 14 14 H 1.08994 * 109.50051 * 34.72496 * 13 12 10 15 15 C 1.53048 * 109.49471 * 154.78877 * 13 12 10 16 16 C 1.53042 * 109.53517 * 181.31579 * 15 13 12 17 17 C 1.53188 * 109.31385 * 298.63332 * 16 15 13 18 18 N 1.46925 * 108.77527 * 54.63786 * 17 16 15 19 19 C 1.36934 * 120.63344 * 126.38959 * 18 17 16 20 20 H 1.08002 * 120.00264 * 207.67210 * 19 18 17 21 21 C 1.38817 * 119.99785 * 27.67613 * 19 18 17 22 22 N 1.31619 * 120.00277 * 17.37253 * 21 19 18 23 23 Si 1.86802 * 119.99813 * 197.37007 * 21 19 18 24 24 H 1.48498 * 109.47199 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47096 * 120.00207 * 23 21 19 26 26 H 1.48504 * 109.46833 * 239.99881 * 23 21 19 27 27 C 1.46937 * 118.76230 * 306.41194 * 18 17 16 28 28 C 1.41558 * 118.94603 * 0.02562 * 5 4 3 29 29 N 1.31239 * 119.15427 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47157 * 269.97567 * 1 2 3 31 31 H 1.09001 * 109.47098 * 29.97884 * 1 2 3 32 32 H 1.09002 * 109.47312 * 149.98004 * 1 2 3 33 33 H 1.07998 * 120.05066 * 0.04282 * 3 2 1 34 34 H 1.07997 * 120.92366 * 179.97438 * 4 3 2 35 35 H 1.07995 * 119.95690 * 0.02562 * 6 5 4 36 36 H 1.08002 * 119.47023 * 179.97438 * 7 6 5 37 37 H 1.08003 * 119.63086 * 180.33083 * 8 7 6 38 38 H 0.97002 * 119.99754 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.46174 * 301.33492 * 15 13 12 40 40 H 1.08998 * 109.45928 * 61.29654 * 15 13 12 41 41 H 1.08996 * 109.49868 * 58.58650 * 16 15 13 42 42 H 1.08997 * 109.49787 * 178.64871 * 16 15 13 43 43 H 1.08998 * 109.58939 * 174.42268 * 17 16 15 44 44 H 1.08997 * 109.58881 * 294.70781 * 17 16 15 45 45 H 0.96995 * 120.00567 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.56069 * 293.78321 * 27 18 17 47 47 H 1.09002 * 109.61484 * 173.36171 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2159 0.0000 4 6 3.5515 1.2338 -0.0005 5 6 4.2321 0.0012 -0.0016 6 6 5.6356 -0.0564 -0.0017 7 6 6.2700 -1.2629 -0.0033 8 6 5.5502 -2.4510 0.0019 9 6 4.1632 -2.4393 -0.0042 10 6 3.4080 -3.7056 -0.0059 11 8 2.1922 -3.6884 -0.0062 12 7 4.0653 -4.8822 -0.0069 13 6 3.3149 -6.1404 -0.0147 14 1 2.4060 -6.0183 -0.6036 15 6 4.1771 -7.2456 -0.6291 16 6 3.3823 -8.5528 -0.6677 17 6 3.0147 -8.9646 0.7613 18 7 2.3105 -7.8493 1.4084 19 6 1.0848 -8.0404 1.9882 20 1 0.3857 -7.2199 2.0564 21 6 0.7407 -9.2888 2.4884 22 7 1.6761 -10.1846 2.7227 23 14 -1.0501 -9.6973 2.8289 24 1 -1.8986 -8.5283 2.4846 25 1 -1.4567 -10.8644 2.0057 26 1 -1.2182 -10.0238 4.2679 27 6 2.9458 -6.5244 1.4216 28 6 3.4788 -1.1973 -0.0027 29 7 2.1463 -1.1461 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6323 2.1436 0.0007 34 1 4.0943 2.1674 -0.0010 35 1 6.2128 0.8564 -0.0005 36 1 7.3495 -1.2956 -0.0037 37 1 6.0764 -3.3941 0.0060 38 1 5.0352 -4.8959 -0.0070 39 1 4.4612 -6.9632 -1.6429 40 1 5.0744 -7.3837 -0.0259 41 1 2.4725 -8.4084 -1.2502 42 1 3.9883 -9.3336 -1.1272 43 1 2.3655 -9.8398 0.7338 44 1 3.9214 -9.1996 1.3186 45 1 1.4357 -11.0567 3.0726 46 1 3.8469 -6.5579 2.0340 47 1 2.2515 -5.7897 1.8293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007578447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:44 Heat of formation + Delta-G solvation = 44.527666 kcal Electronic energy + Delta-G solvation = -28979.177238 eV Core-core repulsion = 25127.340331 eV Total energy + Delta-G solvation = -3851.836907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.15891 -39.33549 -37.52493 -37.01073 -34.21594 -33.62180 -32.44483 -32.05564 -30.57918 -30.36826 -28.38734 -27.98914 -25.22077 -24.20171 -23.74430 -22.61325 -22.06630 -21.63829 -20.10906 -19.32919 -18.28964 -17.76701 -16.76235 -16.50338 -16.06314 -15.35094 -15.06652 -14.97122 -14.69497 -14.39856 -14.15170 -14.00309 -13.83023 -13.40000 -13.28519 -13.06473 -13.03118 -12.89835 -12.41455 -12.33391 -12.26306 -12.20979 -11.74739 -11.59041 -11.52755 -11.03278 -10.84278 -10.75504 -10.63010 -10.19716 -10.15911 -9.93672 -9.83581 -9.64595 -9.54528 -9.07675 -8.91416 -8.71308 -8.45036 -8.30254 -6.60731 -5.72356 -3.13737 -0.02715 0.59514 1.59626 2.56059 3.35391 3.39992 3.43582 3.51203 3.56233 4.01462 4.04346 4.31639 4.42536 4.54706 4.58574 4.61749 4.78869 4.85707 5.03512 5.13684 5.30705 5.36310 5.43419 5.50281 5.52776 5.60723 5.64194 5.66855 5.70112 5.79557 5.82778 5.92684 5.96051 6.08128 6.15827 6.23536 6.28009 6.32039 6.57262 6.59247 6.67307 6.76995 6.78171 6.92339 7.09939 7.41606 7.70315 7.84377 7.90191 7.96737 8.51331 8.64725 9.28792 9.91206 10.46848 11.36464 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.002916 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.076737 B = 9601.402378 C =11085.726751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.158 3.842 3 C -0.172 4.172 4 C -0.059 4.059 5 C -0.117 4.117 6 C -0.074 4.074 7 C -0.128 4.128 8 C -0.066 4.066 9 C -0.101 4.101 10 C 0.547 3.453 11 O -0.492 6.492 12 N -0.723 5.723 13 C 0.129 3.871 14 H 0.086 0.914 15 C -0.114 4.114 16 C -0.139 4.139 17 C 0.167 3.833 18 N -0.588 5.588 19 C -0.247 4.247 20 H 0.067 0.933 21 C 0.001 3.999 22 N -0.905 5.905 23 Si 0.901 3.099 24 H -0.276 1.276 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.143 3.857 28 C 0.168 3.832 29 N -0.435 5.435 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.133 0.867 37 H 0.135 0.865 38 H 0.390 0.610 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.054 0.946 43 H 0.089 0.911 44 H 0.018 0.982 45 H 0.252 0.748 46 H 0.016 0.984 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.449 22.766 -8.299 26.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.006 3.994 3 C -0.192 4.192 4 C -0.084 4.084 5 C -0.120 4.120 6 C -0.093 4.093 7 C -0.146 4.146 8 C -0.087 4.087 9 C -0.105 4.105 10 C 0.332 3.668 11 O -0.365 6.365 12 N -0.376 5.376 13 C 0.024 3.976 14 H 0.104 0.896 15 C -0.153 4.153 16 C -0.179 4.179 17 C 0.041 3.959 18 N -0.311 5.311 19 C -0.376 4.376 20 H 0.085 0.915 21 C -0.197 4.197 22 N -0.550 5.550 23 Si 0.731 3.269 24 H -0.201 1.201 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.015 3.985 28 C 0.044 3.956 29 N -0.143 5.143 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.153 0.847 38 H 0.224 0.776 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.107 0.893 44 H 0.036 0.964 45 H 0.062 0.938 46 H 0.034 0.966 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 9.089 21.732 -8.214 24.947 hybrid contribution 0.324 0.556 0.267 0.697 sum 9.413 22.287 -7.947 25.465 Atomic orbital electron populations 1.20800 0.88504 1.03732 1.03501 1.21741 0.97633 0.88005 0.92065 1.21789 0.95063 0.99410 1.02895 1.21426 0.94488 0.96950 0.95585 1.18824 0.94783 0.94021 1.04323 1.21116 0.92559 0.98623 0.97016 1.20816 1.00535 0.91945 1.01261 1.21465 0.92601 0.99138 0.95460 1.20070 0.93160 0.92860 1.04430 1.17887 0.87746 0.82962 0.78233 1.90880 1.12557 1.86666 1.46445 1.46087 1.09702 1.05971 1.75827 1.21706 0.94880 0.80713 1.00327 0.89556 1.21680 0.98501 0.95873 0.99210 1.22176 0.98970 0.95054 1.01707 1.20832 0.95951 0.92135 0.86937 1.44013 1.19584 1.03587 1.63878 1.19290 0.90313 0.96486 1.31556 0.91488 1.25013 0.97626 0.98281 0.98821 1.70049 1.30695 1.06550 1.47704 0.86222 0.85135 0.78109 0.77395 1.20131 1.21572 1.21792 1.21186 0.96214 0.89088 0.91997 1.18608 0.89413 0.91354 0.96228 1.68207 1.07694 1.27658 1.10754 0.89989 0.90728 0.89752 0.84527 0.84286 0.85024 0.84885 0.84745 0.77609 0.93135 0.92312 0.92419 0.92771 0.89275 0.96355 0.93788 0.96588 0.92355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.09 10.15 36.00 0.37 -0.72 16 2 C 0.16 1.99 6.78 -82.48 -0.56 1.43 16 3 C -0.17 -1.60 9.64 -39.79 -0.38 -1.98 16 4 C -0.06 -0.52 9.89 -39.19 -0.39 -0.91 16 5 C -0.12 -1.31 5.74 -106.82 -0.61 -1.92 16 6 C -0.07 -0.62 9.75 -39.43 -0.38 -1.00 16 7 C -0.13 -1.03 9.93 -40.02 -0.40 -1.42 16 8 C -0.07 -0.67 9.52 -39.16 -0.37 -1.05 16 9 C -0.10 -1.46 5.90 -104.61 -0.62 -2.08 16 10 C 0.55 9.64 7.73 -12.52 -0.10 9.54 16 11 O -0.49 -10.84 14.85 5.28 0.08 -10.76 16 12 N -0.72 -11.31 5.03 -54.77 -0.28 -11.59 16 13 C 0.13 2.44 2.60 -67.81 -0.18 2.26 16 14 H 0.09 1.88 7.57 -51.93 -0.39 1.48 16 15 C -0.11 -1.91 5.35 -26.68 -0.14 -2.05 16 16 C -0.14 -2.67 6.08 -26.61 -0.16 -2.83 16 17 C 0.17 4.04 5.31 -3.71 -0.02 4.02 16 18 N -0.59 -15.43 3.00 -172.32 -0.52 -15.94 16 19 C -0.25 -7.15 9.58 -15.06 -0.14 -7.29 16 20 H 0.07 1.97 7.89 -52.49 -0.41 1.55 16 21 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 22 N -0.90 -26.83 11.19 55.49 0.62 -26.20 16 23 Si 0.90 22.56 29.59 -169.99 -5.03 17.53 16 24 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 27 C 0.14 3.26 6.10 -3.71 -0.02 3.24 16 28 C 0.17 2.50 6.61 -84.58 -0.56 1.94 16 29 N -0.44 -7.14 8.33 -7.01 -0.06 -7.20 16 30 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.51 8.07 -51.93 -0.42 0.09 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 34 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.13 1.02 6.37 -52.48 -0.33 0.69 16 38 H 0.39 4.65 6.63 -40.82 -0.27 4.38 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 44 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 1.45 7.93 -51.93 -0.41 1.04 16 LS Contribution 381.06 15.07 5.74 5.74 Total: -1.00 -36.21 381.06 -10.96 -47.18 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -6.76 Total: 2.14 kcal Atomic # 6 Polarization: 3.87 SS G_CDS: -4.76 Total: -0.89 kcal Atomic # 7 Polarization: -60.70 SS G_CDS: -0.23 Total: -60.93 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.08 Total: -10.76 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.53 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.21 -10.96 -47.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007578447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.703 kcal (2) G-P(sol) polarization free energy of solvation -36.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.175 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds