Wall clock time and date at job start Tue Mar 31 2020 22:29:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39226 * 119.15397 * 2 1 4 4 C 1.36639 * 119.90379 * 180.02562 * 3 2 1 5 5 C 1.40794 * 118.15596 * 0.02562 * 4 3 2 6 6 C 1.40473 * 121.25515 * 180.02562 * 5 4 3 7 7 C 1.36319 * 120.08434 * 180.02562 * 6 5 4 8 8 C 1.38909 * 121.05391 * 359.67285 * 7 6 5 9 9 C 1.38708 * 120.72867 * 0.63172 * 8 7 6 10 10 C 1.47433 * 120.33024 * 179.67314 * 9 8 7 11 11 O 1.21597 * 119.99879 * 179.72307 * 10 9 8 12 12 N 1.34776 * 120.00104 * 359.72782 * 10 9 8 13 13 C 1.46498 * 119.99822 * 180.27460 * 12 10 9 14 14 H 1.08994 * 109.50051 * 34.72496 * 13 12 10 15 15 C 1.53048 * 109.49471 * 154.78877 * 13 12 10 16 16 C 1.53042 * 109.53517 * 181.31579 * 15 13 12 17 17 C 1.53188 * 109.31385 * 298.63332 * 16 15 13 18 18 N 1.46925 * 108.77527 * 54.63786 * 17 16 15 19 19 C 1.36934 * 120.63344 * 126.38959 * 18 17 16 20 20 H 1.08002 * 120.00264 * 207.67210 * 19 18 17 21 21 C 1.38817 * 119.99785 * 27.67613 * 19 18 17 22 22 N 1.31619 * 120.00277 * 17.37253 * 21 19 18 23 23 Si 1.86802 * 119.99813 * 197.37007 * 21 19 18 24 24 H 1.48498 * 109.47199 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47096 * 120.00207 * 23 21 19 26 26 H 1.48504 * 109.46833 * 239.99881 * 23 21 19 27 27 C 1.46937 * 118.76230 * 306.41194 * 18 17 16 28 28 C 1.41558 * 118.94603 * 0.02562 * 5 4 3 29 29 N 1.31239 * 119.15427 * 180.02562 * 2 1 3 30 30 H 1.09002 * 109.47157 * 269.97567 * 1 2 3 31 31 H 1.09001 * 109.47098 * 29.97884 * 1 2 3 32 32 H 1.09002 * 109.47312 * 149.98004 * 1 2 3 33 33 H 1.07998 * 120.05066 * 0.04282 * 3 2 1 34 34 H 1.07997 * 120.92366 * 179.97438 * 4 3 2 35 35 H 1.07995 * 119.95690 * 0.02562 * 6 5 4 36 36 H 1.08002 * 119.47023 * 179.97438 * 7 6 5 37 37 H 1.08003 * 119.63086 * 180.33083 * 8 7 6 38 38 H 0.97002 * 119.99754 * 359.97438 * 12 10 9 39 39 H 1.09002 * 109.46174 * 301.33492 * 15 13 12 40 40 H 1.08998 * 109.45928 * 61.29654 * 15 13 12 41 41 H 1.08996 * 109.49868 * 58.58650 * 16 15 13 42 42 H 1.08997 * 109.49787 * 178.64871 * 16 15 13 43 43 H 1.08998 * 109.58939 * 174.42268 * 17 16 15 44 44 H 1.08997 * 109.58881 * 294.70781 * 17 16 15 45 45 H 0.96995 * 120.00567 * 179.97438 * 22 21 19 46 46 H 1.09002 * 109.56069 * 293.78321 * 27 18 17 47 47 H 1.09002 * 109.61484 * 173.36171 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2159 0.0000 4 6 3.5515 1.2338 -0.0005 5 6 4.2321 0.0012 -0.0016 6 6 5.6356 -0.0564 -0.0017 7 6 6.2700 -1.2629 -0.0033 8 6 5.5502 -2.4510 0.0019 9 6 4.1632 -2.4393 -0.0042 10 6 3.4080 -3.7056 -0.0059 11 8 2.1922 -3.6884 -0.0062 12 7 4.0653 -4.8822 -0.0069 13 6 3.3149 -6.1404 -0.0147 14 1 2.4060 -6.0183 -0.6036 15 6 4.1771 -7.2456 -0.6291 16 6 3.3823 -8.5528 -0.6677 17 6 3.0147 -8.9646 0.7613 18 7 2.3105 -7.8493 1.4084 19 6 1.0848 -8.0404 1.9882 20 1 0.3857 -7.2199 2.0564 21 6 0.7407 -9.2888 2.4884 22 7 1.6761 -10.1846 2.7227 23 14 -1.0501 -9.6973 2.8289 24 1 -1.8986 -8.5283 2.4846 25 1 -1.4567 -10.8644 2.0057 26 1 -1.2182 -10.0238 4.2679 27 6 2.9458 -6.5244 1.4216 28 6 3.4788 -1.1973 -0.0027 29 7 2.1463 -1.1461 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6323 2.1436 0.0007 34 1 4.0943 2.1674 -0.0010 35 1 6.2128 0.8564 -0.0005 36 1 7.3495 -1.2956 -0.0037 37 1 6.0764 -3.3941 0.0060 38 1 5.0352 -4.8959 -0.0070 39 1 4.4612 -6.9632 -1.6429 40 1 5.0744 -7.3837 -0.0259 41 1 2.4725 -8.4084 -1.2502 42 1 3.9883 -9.3336 -1.1272 43 1 2.3655 -9.8398 0.7338 44 1 3.9214 -9.1996 1.3186 45 1 1.4357 -11.0567 3.0726 46 1 3.8469 -6.5579 2.0340 47 1 2.2515 -5.7897 1.8293 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007578447.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:44 Heat of formation + Delta-G solvation = 20.214839 kcal Electronic energy + Delta-G solvation = -28980.231521 eV Core-core repulsion = 25127.340331 eV Total energy + Delta-G solvation = -3852.891190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.01491 -40.66849 -38.94588 -38.08741 -35.93058 -34.51562 -34.09814 -32.90312 -32.36781 -31.57876 -29.85288 -28.82891 -27.28956 -25.13785 -24.75524 -23.90385 -23.38060 -23.12872 -21.43349 -20.92984 -19.08968 -18.81495 -18.72760 -17.54094 -17.06404 -16.91451 -16.44399 -16.24595 -15.80739 -15.66281 -15.56248 -15.23713 -15.09272 -14.81458 -14.72100 -14.29132 -14.12890 -13.96830 -13.85383 -13.76376 -13.41355 -13.10410 -13.06026 -12.98120 -12.78437 -12.57384 -12.29811 -12.29021 -12.12998 -11.99606 -11.77768 -11.59579 -11.47701 -11.32913 -11.00800 -10.64265 -10.14118 -10.06725 -9.67586 -9.24888 -8.72057 -7.93623 -5.38895 -0.81048 -0.16836 0.77645 1.40777 1.41872 1.54503 1.79286 2.10462 2.24538 2.48344 3.15068 3.19854 3.24961 3.53759 3.69455 3.71928 3.83381 3.87316 3.98249 4.00347 4.09725 4.18357 4.23989 4.37009 4.44229 4.45804 4.53698 4.64829 4.69575 4.73319 4.78609 4.90433 4.95482 4.98647 4.99402 5.08451 5.10769 5.13412 5.18361 5.23371 5.25472 5.37610 5.45873 5.55438 5.60100 5.61790 5.74458 5.86690 6.33966 6.63911 7.10016 7.13083 7.37546 7.79201 8.29204 9.12133 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014123 B = 0.002916 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1982.076737 B = 9601.402378 C =11085.726751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.137 3.863 3 C -0.177 4.177 4 C -0.045 4.045 5 C -0.137 4.137 6 C -0.052 4.052 7 C -0.131 4.131 8 C -0.043 4.043 9 C -0.154 4.154 10 C 0.543 3.457 11 O -0.554 6.554 12 N -0.708 5.708 13 C 0.145 3.855 14 H 0.051 0.949 15 C -0.103 4.103 16 C -0.130 4.130 17 C 0.171 3.829 18 N -0.607 5.607 19 C -0.270 4.270 20 H 0.048 0.952 21 C -0.042 4.042 22 N -0.927 5.927 23 Si 0.966 3.034 24 H -0.277 1.277 25 H -0.280 1.280 26 H -0.285 1.285 27 C 0.148 3.852 28 C 0.134 3.866 29 N -0.504 5.504 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.052 0.948 33 H 0.174 0.826 34 H 0.187 0.813 35 H 0.178 0.822 36 H 0.177 0.823 37 H 0.159 0.841 38 H 0.412 0.588 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.044 0.956 42 H 0.088 0.912 43 H 0.056 0.944 44 H 0.008 0.992 45 H 0.253 0.747 46 H 0.022 0.978 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.025 25.578 -9.352 30.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.014 4.014 3 C -0.197 4.197 4 C -0.070 4.070 5 C -0.139 4.139 6 C -0.071 4.071 7 C -0.149 4.149 8 C -0.063 4.063 9 C -0.158 4.158 10 C 0.331 3.669 11 O -0.431 6.431 12 N -0.362 5.362 13 C 0.039 3.961 14 H 0.069 0.931 15 C -0.141 4.141 16 C -0.169 4.169 17 C 0.046 3.954 18 N -0.331 5.331 19 C -0.400 4.400 20 H 0.065 0.935 21 C -0.238 4.238 22 N -0.573 5.573 23 Si 0.793 3.207 24 H -0.202 1.202 25 H -0.206 1.206 26 H -0.212 1.212 27 C 0.021 3.979 28 C 0.011 3.989 29 N -0.214 5.214 30 H 0.101 0.899 31 H 0.129 0.871 32 H 0.072 0.928 33 H 0.191 0.809 34 H 0.204 0.796 35 H 0.195 0.805 36 H 0.194 0.806 37 H 0.177 0.823 38 H 0.250 0.750 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.107 0.893 43 H 0.074 0.926 44 H 0.026 0.974 45 H 0.063 0.937 46 H 0.040 0.960 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges 12.728 24.558 -9.282 29.177 hybrid contribution -0.718 -0.194 0.640 0.981 sum 12.011 24.364 -8.642 28.505 Atomic orbital electron populations 1.20854 0.87957 1.03915 1.03610 1.22234 0.98518 0.88810 0.91862 1.22103 0.95859 0.99207 1.02501 1.21997 0.94410 0.97774 0.92856 1.19194 0.96312 0.93559 1.04826 1.21693 0.91298 1.00676 0.93425 1.21304 1.02492 0.90765 1.00305 1.21853 0.90772 1.01564 0.92107 1.19907 0.94783 0.91019 1.10071 1.18585 0.87407 0.84412 0.76531 1.90837 1.15366 1.87586 1.49353 1.45804 1.10548 1.04457 1.75369 1.21202 0.94939 0.83095 0.96882 0.93116 1.21612 0.97919 0.93084 1.01438 1.22021 0.99533 0.97480 0.97876 1.20734 0.94324 0.90554 0.89764 1.44234 1.19314 1.05148 1.64421 1.19398 0.91589 0.96530 1.32477 0.93466 1.25708 1.01518 0.97886 0.98712 1.70165 1.32332 1.06696 1.48100 0.85246 0.80327 0.77769 0.77346 1.20216 1.20637 1.21192 1.21177 0.95048 0.86938 0.94766 1.19003 0.89477 0.93039 0.97363 1.68120 1.09467 1.30111 1.13669 0.89884 0.87121 0.92843 0.80864 0.79556 0.80488 0.80560 0.82347 0.75041 0.89458 0.90182 0.93680 0.89346 0.92605 0.97402 0.93732 0.96029 0.96042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.33 10.15 71.24 0.72 -1.60 16 2 C 0.14 3.64 6.78 42.88 0.29 3.93 16 3 C -0.18 -2.98 9.64 22.13 0.21 -2.77 16 4 C -0.05 -0.64 9.89 22.52 0.22 -0.42 16 5 C -0.14 -2.75 5.74 -21.29 -0.12 -2.87 16 6 C -0.05 -0.62 9.75 22.37 0.22 -0.40 16 7 C -0.13 -1.49 9.93 21.98 0.22 -1.28 16 8 C -0.04 -0.77 9.52 22.54 0.21 -0.56 16 9 C -0.15 -4.56 5.90 -19.86 -0.12 -4.68 16 10 C 0.54 20.49 7.73 86.67 0.67 21.16 16 11 O -0.55 -27.16 14.85 -4.02 -0.06 -27.22 16 12 N -0.71 -22.57 5.03 -445.44 -2.24 -24.81 16 13 C 0.15 5.69 2.60 45.07 0.12 5.81 16 14 H 0.05 2.37 7.57 -2.39 -0.02 2.35 16 15 C -0.10 -3.24 5.35 30.62 0.16 -3.08 16 16 C -0.13 -4.88 6.08 30.67 0.19 -4.70 16 17 C 0.17 8.53 5.31 86.36 0.46 8.98 16 18 N -0.61 -33.59 3.00 -699.09 -2.09 -35.69 16 19 C -0.27 -16.56 9.58 84.04 0.81 -15.75 16 20 H 0.05 3.01 7.89 -2.91 -0.02 2.98 16 21 C -0.04 -2.52 4.91 84.86 0.42 -2.10 16 22 N -0.93 -56.62 11.19 21.65 0.24 -56.38 16 23 Si 0.97 48.06 29.59 68.60 2.03 50.09 16 24 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 25 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 27 C 0.15 7.17 6.10 86.36 0.53 7.69 16 28 C 0.13 4.14 6.61 40.62 0.27 4.41 16 29 N -0.50 -18.02 8.33 -176.10 -1.47 -19.49 16 30 H 0.08 1.72 8.14 -2.39 -0.02 1.71 16 31 H 0.11 1.49 8.07 -2.39 -0.02 1.47 16 32 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 34 H 0.19 0.79 8.06 -2.91 -0.02 0.77 16 35 H 0.18 0.49 8.06 -2.91 -0.02 0.47 16 36 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 37 H 0.16 1.87 6.37 -2.91 -0.02 1.86 16 38 H 0.41 9.19 6.63 -92.71 -0.61 8.57 16 39 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 40 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 41 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 43 H 0.06 3.13 6.04 -2.39 -0.01 3.12 16 44 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.25 14.76 8.31 -92.71 -0.77 13.99 16 46 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.02 1.15 7.93 -2.39 -0.02 1.14 16 Total: -1.00 -90.79 381.06 2.26 -88.53 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.37 Total: 13.19 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 5.47 Total: 11.77 kcal Atomic # 7 Polarization: -130.81 SS G_CDS: -5.56 Total: -136.37 kcal Atomic # 8 Polarization: -27.16 SS G_CDS: -0.06 Total: -27.22 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.03 Total: 50.09 kcal Total: -90.79 2.26 -88.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007578447.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.747 kcal (2) G-P(sol) polarization free energy of solvation -90.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds