Wall clock time and date at job start Tue Mar 31 2020 22:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39433 * 119.54009 * 2 1 4 4 C 1.35998 * 121.08611 * 180.02562 * 3 2 1 5 5 C 1.40828 * 119.72958 * 359.97438 * 4 3 2 6 6 N 1.33274 * 120.98008 * 179.97438 * 5 4 3 7 7 C 1.31871 * 121.30299 * 180.02562 * 6 5 4 8 8 C 1.48272 * 119.24396 * 179.97438 * 7 6 5 9 9 O 1.21505 * 120.00255 * 180.02562 * 8 7 6 10 10 N 1.34773 * 119.99971 * 0.02562 * 8 7 6 11 11 C 1.46498 * 120.00285 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.50124 * 35.06511 * 11 10 8 13 13 C 1.53037 * 109.52906 * 155.11402 * 11 10 8 14 14 C 1.53038 * 109.54214 * 181.29681 * 13 11 10 15 15 C 1.53191 * 109.34152 * 298.68565 * 14 13 11 16 16 N 1.46925 * 108.77463 * 54.61574 * 15 14 13 17 17 C 1.36934 * 120.62881 * 126.41501 * 16 15 14 18 18 H 1.07999 * 120.00238 * 207.67150 * 17 16 15 19 19 C 1.38813 * 120.00212 * 27.66499 * 17 16 15 20 20 N 1.31618 * 119.99784 * 17.37115 * 19 17 16 21 21 Si 1.86798 * 120.00239 * 197.36648 * 19 17 16 22 22 H 1.48495 * 109.47216 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46727 * 120.00490 * 21 19 17 24 24 H 1.48501 * 109.46989 * 240.00226 * 21 19 17 25 25 C 1.46925 * 118.73947 * 306.39535 * 16 15 14 26 26 C 1.40283 * 121.51689 * 0.28103 * 7 6 5 27 27 C 1.36513 * 119.81397 * 359.41107 * 26 7 6 28 28 C 1.40750 * 118.24030 * 0.58893 * 27 26 7 29 29 C 1.36132 * 119.54499 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47178 * 89.99902 * 1 2 3 31 31 H 1.09004 * 109.46683 * 210.00194 * 1 2 3 32 32 H 1.08997 * 109.46848 * 329.99359 * 1 2 3 33 33 H 1.08002 * 119.46434 * 0.02562 * 3 2 1 34 34 H 1.07993 * 120.13848 * 179.97438 * 4 3 2 35 35 H 0.97008 * 119.99926 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.43391 * 61.29419 * 13 11 10 37 37 H 1.08999 * 109.48608 * 301.33963 * 13 11 10 38 38 H 1.08999 * 109.49614 * 178.70829 * 14 13 11 39 39 H 1.09006 * 109.49634 * 58.65457 * 14 13 11 40 40 H 1.08996 * 109.58281 * 174.40715 * 15 14 13 41 41 H 1.09004 * 109.58459 * 294.68493 * 15 14 13 42 42 H 0.97006 * 120.00403 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.58320 * 173.39910 * 25 16 15 44 44 H 1.09007 * 109.58169 * 293.81941 * 25 16 15 45 45 H 1.07999 * 120.08862 * 179.72594 * 26 7 6 46 46 H 1.08005 * 120.87416 * 180.26833 * 27 26 7 47 47 H 1.08005 * 120.17301 * 359.97411 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.2131 0.0000 4 6 3.5539 1.2498 -0.0005 5 6 4.2850 0.0462 -0.0005 6 7 5.6178 0.0530 -0.0015 7 6 6.3087 -1.0702 -0.0021 8 6 7.7902 -1.0093 -0.0038 9 8 8.4405 -2.0356 -0.0047 10 7 8.4155 0.1846 -0.0042 11 6 9.8793 0.2449 -0.0065 12 1 10.2765 -0.5802 -0.5977 13 6 10.3356 1.5735 -0.6136 14 6 11.8649 1.6231 -0.6458 15 6 12.4056 1.5334 0.7847 16 7 11.8542 0.3310 1.4241 17 6 12.6823 -0.5935 2.0028 18 1 12.3773 -1.6276 2.0650 19 6 13.9138 -0.2015 2.5093 20 7 14.1515 1.0704 2.7503 21 14 15.2335 -1.4790 2.8491 22 1 14.7204 -2.8269 2.4957 23 1 16.4362 -1.1776 2.0318 24 1 15.5934 -1.4479 4.2895 25 6 10.3975 0.1395 1.4312 26 6 5.6744 -2.3214 -0.0074 27 6 4.3110 -2.3912 -0.0001 28 6 3.5825 -1.1869 0.0000 29 6 2.1783 -1.1843 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6383 2.1389 0.0004 34 1 4.0707 2.1980 -0.0009 35 1 7.8964 1.0041 -0.0031 36 1 9.9583 2.3975 -0.0081 37 1 9.9480 1.6617 -1.6285 38 1 12.1890 2.5598 -1.0993 39 1 12.2438 0.7854 -1.2312 40 1 13.4934 1.4684 0.7606 41 1 12.1048 2.4185 1.3452 42 1 15.0119 1.3444 3.1047 43 1 10.1604 -0.8452 1.8339 44 1 9.9308 0.9098 2.0453 45 1 6.2630 -3.2268 -0.0122 46 1 3.8049 -3.3453 0.0003 47 1 1.6336 -2.1170 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007882344.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:31 Heat of formation + Delta-G solvation = 33.717197 kcal Electronic energy + Delta-G solvation = -28325.584629 eV Core-core repulsion = 24473.278945 eV Total energy + Delta-G solvation = -3852.305684 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.26100 -39.57467 -37.79075 -37.05897 -34.41876 -33.80680 -32.64413 -32.13826 -30.56711 -30.42385 -28.94803 -27.45520 -25.24437 -24.62840 -23.74791 -22.44085 -22.12540 -21.87261 -20.34832 -19.44713 -18.28461 -17.82622 -17.09622 -16.70635 -15.71300 -15.55054 -15.24933 -14.78850 -14.70418 -14.49685 -14.44145 -14.16571 -13.92147 -13.66538 -13.44153 -13.37864 -13.29156 -13.02921 -12.75546 -12.36155 -12.33820 -11.90488 -11.80823 -11.75115 -11.54821 -11.06572 -10.89540 -10.87153 -10.76116 -10.30804 -10.21113 -10.16951 -9.87079 -9.84577 -9.58504 -9.48874 -9.02457 -8.78503 -8.53178 -8.35902 -6.63482 -5.74506 -3.16267 -0.07665 0.39719 1.63257 2.24592 3.15737 3.22064 3.41809 3.49541 3.53793 3.86493 3.89304 4.20482 4.34707 4.40542 4.54685 4.64578 4.67968 4.79628 4.95416 5.10761 5.13440 5.16154 5.33047 5.41630 5.42498 5.44703 5.57909 5.63792 5.65918 5.70201 5.77467 5.78626 5.95386 6.11380 6.12182 6.16804 6.20353 6.29612 6.47328 6.57337 6.65152 6.70042 6.73670 6.87866 7.02711 7.38804 7.41983 7.68999 7.81387 7.87404 8.38099 8.50390 9.26135 9.88504 10.44319 11.34239 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022602 B = 0.002211 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.538449 B =12661.231402 C =13266.591109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.077 4.077 3 C -0.104 4.104 4 C -0.080 4.080 5 C 0.120 3.880 6 N -0.443 5.443 7 C 0.123 3.877 8 C 0.563 3.437 9 O -0.526 6.526 10 N -0.698 5.698 11 C 0.124 3.876 12 H 0.088 0.912 13 C -0.115 4.115 14 C -0.139 4.139 15 C 0.167 3.833 16 N -0.587 5.587 17 C -0.248 4.248 18 H 0.068 0.932 19 C 0.000 4.000 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.277 1.277 23 H -0.289 1.289 24 H -0.291 1.291 25 C 0.142 3.858 26 C -0.122 4.122 27 C -0.066 4.066 28 C -0.084 4.084 29 C -0.105 4.105 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.131 0.869 34 H 0.139 0.861 35 H 0.405 0.595 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.019 0.981 42 H 0.253 0.747 43 H 0.058 0.942 44 H 0.019 0.981 45 H 0.152 0.848 46 H 0.145 0.855 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.613 0.036 -8.361 28.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.077 4.077 3 C -0.124 4.124 4 C -0.098 4.098 5 C -0.004 4.004 6 N -0.155 5.155 7 C -0.031 4.031 8 C 0.346 3.654 9 O -0.401 6.401 10 N -0.348 5.348 11 C 0.019 3.981 12 H 0.106 0.894 13 C -0.153 4.153 14 C -0.179 4.179 15 C 0.041 3.959 16 N -0.310 5.310 17 C -0.378 4.378 18 H 0.085 0.915 19 C -0.198 4.198 20 N -0.549 5.549 21 Si 0.732 3.268 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.218 1.218 25 C 0.014 3.986 26 C -0.143 4.143 27 C -0.092 4.092 28 C -0.087 4.087 29 C -0.123 4.123 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.149 0.851 34 H 0.157 0.843 35 H 0.240 0.760 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.108 0.892 41 H 0.037 0.963 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.037 0.963 45 H 0.170 0.830 46 H 0.163 0.837 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -26.561 0.219 -8.277 27.821 hybrid contribution -0.001 -0.921 0.245 0.953 sum -26.562 -0.701 -8.032 27.759 Atomic orbital electron populations 1.20861 0.90698 1.03172 1.02645 1.19758 0.96565 0.92997 0.98406 1.20827 0.93964 0.97869 0.99742 1.20886 0.93550 0.96961 0.98452 1.18846 0.88936 0.92962 0.99643 1.67833 1.07409 1.29945 1.10273 1.21520 0.94690 0.89463 0.97387 1.17876 0.85367 0.84507 0.77657 1.90820 1.65656 1.33867 1.49776 1.46011 1.08366 1.08006 1.72451 1.21836 0.76772 0.98892 1.00645 0.89410 1.21674 0.97966 0.96253 0.99383 1.22178 0.93514 1.00482 1.01707 1.20845 0.99971 0.88082 0.87004 1.44011 0.99124 1.23678 1.64209 1.19270 0.97785 0.89073 1.31623 0.91477 1.25027 0.99925 0.96071 0.98751 1.70053 1.23003 1.14479 1.47338 0.86212 0.81922 0.81235 0.77411 1.20156 1.21562 1.21777 1.21188 0.86223 0.99377 0.91788 1.21807 0.95092 0.99102 0.98254 1.21450 0.93699 0.97782 0.96259 1.18944 0.94813 0.94030 1.00868 1.20839 0.92115 0.98337 1.01033 0.90809 0.91280 0.91182 0.85111 0.84269 0.75954 0.92127 0.93004 0.92675 0.92400 0.89236 0.96274 0.93746 0.92329 0.96348 0.83015 0.83720 0.85118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.49 9.98 36.00 0.36 -0.13 16 2 C -0.08 -0.53 5.85 -104.93 -0.61 -1.15 16 3 C -0.10 -0.75 9.58 -39.94 -0.38 -1.14 16 4 C -0.08 -0.74 9.99 -39.41 -0.39 -1.14 16 5 C 0.12 1.40 6.61 -84.85 -0.56 0.84 16 6 N -0.44 -5.92 9.47 -7.54 -0.07 -5.99 16 7 C 0.12 1.75 6.75 -82.96 -0.56 1.19 16 8 C 0.56 9.51 7.78 -12.14 -0.09 9.42 16 9 O -0.53 -10.54 15.95 5.36 0.09 -10.45 16 10 N -0.70 -11.30 5.07 -54.50 -0.28 -11.58 16 11 C 0.12 2.32 2.60 -67.81 -0.18 2.15 16 12 H 0.09 1.84 7.58 -51.93 -0.39 1.45 16 13 C -0.11 -1.93 5.36 -26.69 -0.14 -2.08 16 14 C -0.14 -2.65 6.08 -26.61 -0.16 -2.81 16 15 C 0.17 4.01 5.31 -3.71 -0.02 3.99 16 16 N -0.59 -15.25 2.99 -172.32 -0.52 -15.76 16 17 C -0.25 -7.08 9.59 -15.06 -0.14 -7.22 16 18 H 0.07 1.93 7.89 -52.49 -0.41 1.52 16 19 C 0.00 0.01 4.91 -17.43 -0.09 -0.07 16 20 N -0.90 -26.63 11.19 55.49 0.62 -26.00 16 21 Si 0.90 22.32 29.59 -169.99 -5.03 17.30 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 C 0.14 3.20 6.09 -3.71 -0.02 3.18 16 26 C -0.12 -1.46 9.54 -39.44 -0.38 -1.84 16 27 C -0.07 -0.63 9.88 -39.26 -0.39 -1.02 16 28 C -0.08 -0.86 5.75 -106.72 -0.61 -1.47 16 29 C -0.10 -0.80 9.37 -39.52 -0.37 -1.18 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.24 8.07 -51.93 -0.42 -0.18 16 32 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 34 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.41 5.73 7.91 -40.82 -0.32 5.41 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.09 2.40 6.04 -51.93 -0.31 2.09 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 43 H 0.06 1.41 7.93 -51.93 -0.41 0.99 16 44 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 45 H 0.15 1.74 7.60 -52.49 -0.40 1.34 16 46 H 0.15 0.88 8.06 -52.48 -0.42 0.46 16 47 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 LS Contribution 385.21 15.07 5.80 5.80 Total: -1.00 -33.15 385.21 -11.01 -44.16 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -6.88 Total: 2.99 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -4.75 Total: -0.47 kcal Atomic # 7 Polarization: -59.09 SS G_CDS: -0.24 Total: -59.33 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.30 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.15 -11.01 -44.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007882344.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.876 kcal (2) G-P(sol) polarization free energy of solvation -33.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds