Wall clock time and date at job start Tue Mar 31 2020 22:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39433 * 119.54009 * 2 1 4 4 C 1.35998 * 121.08611 * 180.02562 * 3 2 1 5 5 C 1.40828 * 119.72958 * 359.97438 * 4 3 2 6 6 N 1.33274 * 120.98008 * 179.97438 * 5 4 3 7 7 C 1.31871 * 121.30299 * 180.02562 * 6 5 4 8 8 C 1.48272 * 119.24396 * 179.97438 * 7 6 5 9 9 O 1.21505 * 120.00255 * 180.02562 * 8 7 6 10 10 N 1.34773 * 119.99971 * 0.02562 * 8 7 6 11 11 C 1.46498 * 120.00285 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.50124 * 35.06511 * 11 10 8 13 13 C 1.53037 * 109.52906 * 155.11402 * 11 10 8 14 14 C 1.53038 * 109.54214 * 181.29681 * 13 11 10 15 15 C 1.53191 * 109.34152 * 298.68565 * 14 13 11 16 16 N 1.46925 * 108.77463 * 54.61574 * 15 14 13 17 17 C 1.36934 * 120.62881 * 126.41501 * 16 15 14 18 18 H 1.07999 * 120.00238 * 207.67150 * 17 16 15 19 19 C 1.38813 * 120.00212 * 27.66499 * 17 16 15 20 20 N 1.31618 * 119.99784 * 17.37115 * 19 17 16 21 21 Si 1.86798 * 120.00239 * 197.36648 * 19 17 16 22 22 H 1.48495 * 109.47216 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.46727 * 120.00490 * 21 19 17 24 24 H 1.48501 * 109.46989 * 240.00226 * 21 19 17 25 25 C 1.46925 * 118.73947 * 306.39535 * 16 15 14 26 26 C 1.40283 * 121.51689 * 0.28103 * 7 6 5 27 27 C 1.36513 * 119.81397 * 359.41107 * 26 7 6 28 28 C 1.40750 * 118.24030 * 0.58893 * 27 26 7 29 29 C 1.36132 * 119.54499 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47178 * 89.99902 * 1 2 3 31 31 H 1.09004 * 109.46683 * 210.00194 * 1 2 3 32 32 H 1.08997 * 109.46848 * 329.99359 * 1 2 3 33 33 H 1.08002 * 119.46434 * 0.02562 * 3 2 1 34 34 H 1.07993 * 120.13848 * 179.97438 * 4 3 2 35 35 H 0.97008 * 119.99926 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.43391 * 61.29419 * 13 11 10 37 37 H 1.08999 * 109.48608 * 301.33963 * 13 11 10 38 38 H 1.08999 * 109.49614 * 178.70829 * 14 13 11 39 39 H 1.09006 * 109.49634 * 58.65457 * 14 13 11 40 40 H 1.08996 * 109.58281 * 174.40715 * 15 14 13 41 41 H 1.09004 * 109.58459 * 294.68493 * 15 14 13 42 42 H 0.97006 * 120.00403 * 179.97438 * 20 19 17 43 43 H 1.08997 * 109.58320 * 173.39910 * 25 16 15 44 44 H 1.09007 * 109.58169 * 293.81941 * 25 16 15 45 45 H 1.07999 * 120.08862 * 179.72594 * 26 7 6 46 46 H 1.08005 * 120.87416 * 180.26833 * 27 26 7 47 47 H 1.08005 * 120.17301 * 359.97411 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1944 1.2131 0.0000 4 6 3.5539 1.2498 -0.0005 5 6 4.2850 0.0462 -0.0005 6 7 5.6178 0.0530 -0.0015 7 6 6.3087 -1.0702 -0.0021 8 6 7.7902 -1.0093 -0.0038 9 8 8.4405 -2.0356 -0.0047 10 7 8.4155 0.1846 -0.0042 11 6 9.8793 0.2449 -0.0065 12 1 10.2765 -0.5802 -0.5977 13 6 10.3356 1.5735 -0.6136 14 6 11.8649 1.6231 -0.6458 15 6 12.4056 1.5334 0.7847 16 7 11.8542 0.3310 1.4241 17 6 12.6823 -0.5935 2.0028 18 1 12.3773 -1.6276 2.0650 19 6 13.9138 -0.2015 2.5093 20 7 14.1515 1.0704 2.7503 21 14 15.2335 -1.4790 2.8491 22 1 14.7204 -2.8269 2.4957 23 1 16.4362 -1.1776 2.0318 24 1 15.5934 -1.4479 4.2895 25 6 10.3975 0.1395 1.4312 26 6 5.6744 -2.3214 -0.0074 27 6 4.3110 -2.3912 -0.0001 28 6 3.5825 -1.1869 0.0000 29 6 2.1783 -1.1843 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6383 2.1389 0.0004 34 1 4.0707 2.1980 -0.0009 35 1 7.8964 1.0041 -0.0031 36 1 9.9583 2.3975 -0.0081 37 1 9.9480 1.6617 -1.6285 38 1 12.1890 2.5598 -1.0993 39 1 12.2438 0.7854 -1.2312 40 1 13.4934 1.4684 0.7606 41 1 12.1048 2.4185 1.3452 42 1 15.0119 1.3444 3.1047 43 1 10.1604 -0.8452 1.8339 44 1 9.9308 0.9098 2.0453 45 1 6.2630 -3.2268 -0.0122 46 1 3.8049 -3.3453 0.0003 47 1 1.6336 -2.1170 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007882344.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:18:30 Heat of formation + Delta-G solvation = 13.450919 kcal Electronic energy + Delta-G solvation = -28326.463440 eV Core-core repulsion = 24473.278945 eV Total energy + Delta-G solvation = -3853.184496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.11091 -40.85025 -39.12291 -38.18580 -36.04463 -34.70981 -34.13123 -33.08106 -32.37053 -31.28280 -30.46620 -28.25890 -27.28130 -25.44583 -24.68264 -23.90911 -23.43457 -23.00249 -21.65789 -21.10885 -19.13920 -18.95687 -18.71146 -17.83416 -17.13460 -16.68841 -16.56051 -16.42190 -15.82823 -15.49253 -15.42864 -15.30935 -15.14698 -14.98739 -14.80965 -14.37429 -14.17577 -14.12556 -14.03903 -14.02166 -13.43455 -13.15701 -13.05446 -12.78087 -12.60415 -12.45656 -12.38671 -12.21196 -12.12957 -11.98507 -11.82115 -11.65726 -11.64452 -11.34641 -11.33128 -10.65847 -10.63246 -10.21325 -9.75011 -9.19450 -8.72324 -7.91982 -5.37640 -0.87845 -0.36839 0.89052 1.34915 1.43195 1.44497 1.56648 1.94329 2.16721 2.48933 2.91463 3.04383 3.22009 3.53207 3.61586 3.71928 3.76479 3.81658 3.88740 4.00898 4.06899 4.17129 4.22252 4.32929 4.41929 4.44296 4.53108 4.66361 4.75580 4.76867 4.88352 4.90171 4.91215 4.98299 5.01567 5.06826 5.09449 5.11021 5.23325 5.23615 5.31786 5.40728 5.44716 5.52141 5.56709 5.61412 5.74311 5.85360 6.32705 6.36077 6.67007 7.08118 7.11882 7.79498 8.30441 9.14115 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.022602 B = 0.002211 C = 0.002110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.538449 B =12661.231402 C =13266.591109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.072 4.072 3 C -0.093 4.093 4 C -0.099 4.099 5 C 0.093 3.907 6 N -0.454 5.454 7 C 0.097 3.903 8 C 0.562 3.438 9 O -0.567 6.567 10 N -0.690 5.690 11 C 0.140 3.860 12 H 0.064 0.936 13 C -0.105 4.105 14 C -0.128 4.128 15 C 0.171 3.829 16 N -0.606 5.606 17 C -0.267 4.267 18 H 0.054 0.946 19 C -0.046 4.046 20 N -0.930 5.930 21 Si 0.968 3.032 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.288 1.288 25 C 0.145 3.855 26 C -0.142 4.142 27 C -0.050 4.050 28 C -0.094 4.094 29 C -0.109 4.109 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.160 0.840 34 H 0.144 0.856 35 H 0.417 0.583 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.005 0.995 42 H 0.253 0.747 43 H 0.032 0.968 44 H 0.018 0.982 45 H 0.148 0.852 46 H 0.183 0.817 47 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.188 0.448 -9.451 32.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.072 4.072 3 C -0.113 4.113 4 C -0.118 4.118 5 C -0.031 4.031 6 N -0.166 5.166 7 C -0.055 4.055 8 C 0.347 3.653 9 O -0.445 6.445 10 N -0.340 5.340 11 C 0.034 3.966 12 H 0.083 0.917 13 C -0.143 4.143 14 C -0.167 4.167 15 C 0.045 3.955 16 N -0.330 5.330 17 C -0.397 4.397 18 H 0.072 0.928 19 C -0.242 4.242 20 N -0.575 5.575 21 Si 0.795 3.205 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.215 1.215 25 C 0.018 3.982 26 C -0.163 4.163 27 C -0.075 4.075 28 C -0.096 4.096 29 C -0.127 4.127 30 H 0.104 0.896 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.177 0.823 34 H 0.162 0.838 35 H 0.255 0.745 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.076 0.924 41 H 0.023 0.977 42 H 0.062 0.938 43 H 0.050 0.950 44 H 0.036 0.964 45 H 0.166 0.834 46 H 0.200 0.800 47 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -30.173 0.658 -9.382 31.605 hybrid contribution 0.842 -0.984 0.628 1.440 sum -29.331 -0.326 -8.754 30.611 Atomic orbital electron populations 1.20942 0.88292 1.04361 1.03685 1.20199 0.98292 0.92515 0.96242 1.21232 0.93256 0.99455 0.97331 1.21067 0.94534 0.96472 0.99729 1.19278 0.88453 0.94705 1.00641 1.67704 1.08657 1.29677 1.10537 1.21103 0.92876 0.90879 1.00673 1.18370 0.86815 0.83844 0.76281 1.90783 1.66998 1.35114 1.51586 1.45825 1.07212 1.08636 1.72347 1.21384 0.78236 0.99542 0.97474 0.91742 1.21614 0.96276 0.95001 1.01382 1.22013 0.94937 1.01839 0.97957 1.20738 0.98236 0.86690 0.89792 1.44237 1.00211 1.23838 1.64695 1.19437 0.98887 0.89221 1.32148 0.92784 1.25761 1.01603 0.98035 0.98783 1.70182 1.23345 1.16014 1.47977 0.85208 0.79147 0.78940 0.77157 1.19803 1.20894 1.21473 1.21192 0.84873 0.97724 0.94391 1.21822 0.96359 0.98061 1.00011 1.21836 0.92554 0.99310 0.93816 1.19245 0.96190 0.93587 1.00560 1.21175 0.90946 1.00088 1.00486 0.89649 0.90175 0.90048 0.82264 0.83784 0.74535 0.90827 0.89585 0.89516 0.93098 0.92413 0.97733 0.93818 0.94970 0.96434 0.83430 0.79999 0.82264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 9.98 71.24 0.71 0.27 16 2 C -0.07 -0.73 5.85 -20.07 -0.12 -0.85 16 3 C -0.09 -1.05 9.58 22.04 0.21 -0.84 16 4 C -0.10 -1.69 9.99 22.38 0.22 -1.47 16 5 C 0.09 2.10 6.61 40.47 0.27 2.37 16 6 N -0.45 -12.28 9.47 -177.77 -1.68 -13.96 16 7 C 0.10 2.87 6.75 42.31 0.29 3.16 16 8 C 0.56 20.01 7.78 86.91 0.68 20.68 16 9 O -0.57 -24.25 15.95 -3.73 -0.06 -24.31 16 10 N -0.69 -22.92 5.07 -444.64 -2.25 -25.17 16 11 C 0.14 5.38 2.60 45.07 0.12 5.50 16 12 H 0.06 2.82 7.58 -2.39 -0.02 2.80 16 13 C -0.10 -3.40 5.36 30.62 0.16 -3.23 16 14 C -0.13 -4.79 6.08 30.67 0.19 -4.61 16 15 C 0.17 8.43 5.31 86.36 0.46 8.89 16 16 N -0.61 -32.80 2.99 -699.10 -2.09 -34.90 16 17 C -0.27 -15.89 9.59 84.03 0.81 -15.08 16 18 H 0.05 3.28 7.89 -2.91 -0.02 3.26 16 19 C -0.05 -2.70 4.91 84.86 0.42 -2.28 16 20 N -0.93 -56.31 11.19 21.65 0.24 -56.07 16 21 Si 0.97 47.11 29.59 68.60 2.03 49.14 16 22 H -0.27 -13.02 7.11 99.48 0.71 -12.32 16 23 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 24 H -0.29 -13.82 7.11 99.48 0.71 -13.12 16 25 C 0.15 6.88 6.09 86.36 0.53 7.40 16 26 C -0.14 -3.47 9.54 22.36 0.21 -3.26 16 27 C -0.05 -0.87 9.88 22.48 0.22 -0.65 16 28 C -0.09 -1.73 5.75 -21.22 -0.12 -1.85 16 29 C -0.11 -1.30 9.37 22.31 0.21 -1.09 16 30 H 0.08 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.08 0.18 8.07 -2.38 -0.02 0.16 16 32 H 0.08 0.17 8.08 -2.39 -0.02 0.15 16 33 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 34 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 35 H 0.42 11.83 7.91 -92.70 -0.73 11.09 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 38 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 39 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 40 H 0.06 3.21 6.04 -2.39 -0.01 3.19 16 41 H 0.00 0.23 8.14 -2.38 -0.02 0.22 16 42 H 0.25 14.64 8.31 -92.70 -0.77 13.87 16 43 H 0.03 1.65 7.93 -2.39 -0.02 1.63 16 44 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 45 H 0.15 3.60 7.60 -2.91 -0.02 3.57 16 46 H 0.18 1.66 8.06 -2.91 -0.02 1.64 16 47 H 0.16 0.94 8.06 -2.91 -0.02 0.92 16 Total: -1.00 -76.59 385.21 1.89 -74.70 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: 0.25 Total: 17.51 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 5.45 Total: 13.06 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -5.79 Total: -130.10 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.06 Total: -24.31 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -76.59 1.89 -74.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007882344.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.150 kcal (2) G-P(sol) polarization free energy of solvation -76.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds