Wall clock time and date at job start Tue Mar 31 2020 22:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36536 * 120.09004 * 2 1 4 4 C 1.40724 * 118.23822 * 180.02562 * 3 2 1 5 5 C 1.40424 * 121.28056 * 180.02562 * 4 3 2 6 6 C 1.36136 * 119.64698 * 179.97438 * 5 4 3 7 7 C 1.39433 * 120.91928 * 0.03830 * 6 5 4 8 8 C 1.35995 * 121.08946 * 359.97438 * 7 6 5 9 9 C 1.40823 * 119.73486 * 359.97438 * 8 7 6 10 10 N 1.33246 * 120.98970 * 180.02562 * 9 8 7 11 11 C 1.31902 * 121.29826 * 179.97438 * 10 9 8 12 12 C 1.48277 * 119.23510 * 179.97438 * 11 10 9 13 13 O 1.21503 * 119.99674 * 174.11842 * 12 11 10 14 14 N 1.34778 * 120.00438 * 354.12438 * 12 11 10 15 15 C 1.46498 * 120.00072 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.49475 * 324.99492 * 15 14 12 17 17 C 1.53040 * 109.49757 * 204.93605 * 15 14 12 18 18 C 1.53041 * 109.53974 * 178.68280 * 17 15 14 19 19 C 1.53190 * 109.30964 * 61.36194 * 18 17 15 20 20 N 1.46931 * 108.77826 * 305.36435 * 19 18 17 21 21 C 1.36932 * 120.62842 * 233.61319 * 20 19 18 22 22 H 1.07997 * 120.00376 * 28.00369 * 21 20 19 23 23 C 1.38819 * 120.00074 * 208.00034 * 21 20 19 24 24 N 1.31623 * 119.99709 * 16.65130 * 23 21 20 25 25 Si 1.86797 * 120.00261 * 196.65555 * 23 21 20 26 26 H 1.48504 * 109.47046 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46826 * 119.99661 * 25 23 21 28 28 H 1.48493 * 109.47146 * 239.99798 * 25 23 21 29 29 C 1.46928 * 118.76145 * 53.59200 * 20 19 18 30 30 H 1.09000 * 109.46985 * 263.05361 * 1 2 3 31 31 H 1.08997 * 109.47063 * 23.04967 * 1 2 3 32 32 H 1.08998 * 109.47394 * 143.05435 * 1 2 3 33 33 H 1.07997 * 120.88311 * 0.04707 * 3 2 1 34 34 H 1.07996 * 120.18069 * 359.97438 * 5 4 3 35 35 H 1.08007 * 119.53848 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.45268 * 179.97438 * 7 6 5 37 37 H 1.07998 * 120.12789 * 180.02562 * 8 7 6 38 38 H 0.96999 * 119.99496 * 359.97438 * 14 12 11 39 39 H 1.09006 * 109.45502 * 298.70093 * 17 15 14 40 40 H 1.08998 * 109.46054 * 58.65825 * 17 15 14 41 41 H 1.09003 * 109.49620 * 181.31101 * 18 17 15 42 42 H 1.08998 * 109.49642 * 301.37735 * 18 17 15 43 43 H 1.09004 * 109.58980 * 65.15393 * 19 18 17 44 44 H 1.09006 * 109.58439 * 185.43746 * 19 18 17 45 45 H 0.96994 * 119.99797 * 180.02562 * 24 23 21 46 46 H 1.09006 * 109.61419 * 186.64254 * 29 20 19 47 47 H 1.08994 * 109.56383 * 66.21400 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1915 1.1814 0.0000 4 6 3.5980 1.1359 -0.0006 5 6 4.3656 2.3118 -0.0001 6 6 5.7244 2.2290 -0.0001 7 6 6.3668 0.9915 -0.0014 8 6 5.6567 -0.1683 -0.0022 9 6 4.2491 -0.1255 -0.0011 10 7 3.5287 -1.2464 -0.0013 11 6 2.2101 -1.2134 0.0002 12 6 1.4537 -2.4888 -0.0007 13 8 0.2437 -2.4775 0.1085 14 7 2.1085 -3.6605 -0.1225 15 6 1.3612 -4.9206 -0.1228 16 1 0.5084 -4.8380 0.5511 17 6 2.2742 -6.0560 0.3456 18 6 1.4855 -7.3672 0.3771 19 6 0.9916 -7.6952 -1.0355 20 7 0.2330 -6.5469 -1.5499 21 6 -1.0396 -6.7094 -2.0285 22 1 -1.6610 -7.5076 -1.6502 23 6 -1.5311 -5.8482 -3.0000 24 7 -0.7022 -5.0977 -3.6943 25 14 -3.3688 -5.7542 -3.3217 26 1 -4.0787 -6.6913 -2.4144 27 1 -3.8446 -4.3696 -3.0733 28 1 -3.6439 -6.1266 -4.7326 29 6 0.8652 -5.2206 -1.5408 30 1 -0.3633 -0.1243 1.0201 31 1 -0.3633 0.9456 -0.4023 32 1 -0.3634 -0.8213 -0.6177 33 1 1.6675 2.1257 0.0008 34 1 3.8805 3.2767 0.0004 35 1 6.3130 3.1346 0.0007 36 1 7.4461 0.9535 -0.0018 37 1 6.1703 -1.1184 -0.0028 38 1 3.0745 -3.6695 -0.2100 39 1 3.1141 -6.1539 -0.3423 40 1 2.6477 -5.8328 1.3450 41 1 2.1300 -8.1710 0.7330 42 1 0.6316 -7.2621 1.0463 43 1 1.8451 -7.8899 -1.6850 44 1 0.3491 -8.5752 -1.0027 45 1 -1.0456 -4.4956 -4.3728 46 1 0.1376 -4.4664 -1.8407 47 1 1.7081 -5.2133 -2.2319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007984877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:57 Heat of formation + Delta-G solvation = 40.866226 kcal Electronic energy + Delta-G solvation = -29239.708126 eV Core-core repulsion = 25387.712448 eV Total energy + Delta-G solvation = -3851.995679 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.19436 -39.41091 -37.62823 -36.78302 -34.62515 -33.81044 -32.62422 -31.74185 -30.66728 -29.96347 -28.73670 -27.06295 -25.30767 -25.22356 -22.73690 -22.28232 -22.24109 -21.93772 -20.28866 -19.42109 -18.14932 -17.89716 -16.83746 -16.72216 -15.53663 -15.40463 -15.26314 -14.82815 -14.63414 -14.50279 -14.03818 -13.91887 -13.74138 -13.46777 -13.26921 -13.13553 -13.05624 -12.82792 -12.39337 -12.28378 -12.15526 -11.86500 -11.77458 -11.75444 -11.69197 -10.99050 -10.74049 -10.70160 -10.52275 -10.45034 -10.19266 -9.98221 -9.91291 -9.87722 -9.49698 -9.18270 -8.87442 -8.46569 -8.42177 -8.40477 -6.62141 -5.72375 -3.16139 0.05009 0.53061 1.75969 2.40745 3.31169 3.39970 3.44600 3.51537 3.53346 3.98977 4.03525 4.34174 4.53738 4.55777 4.58186 4.74697 4.88536 4.94682 5.09993 5.16881 5.39675 5.43797 5.52620 5.54613 5.58726 5.66120 5.72741 5.75120 5.82157 5.89258 5.96426 6.11091 6.13501 6.18214 6.20038 6.25319 6.36618 6.45688 6.46142 6.53481 6.68514 6.73686 6.81281 6.98496 7.00492 7.32545 7.54747 7.76091 7.86142 7.99338 8.50681 8.59786 9.25967 9.89900 10.45056 11.35411 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.003112 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.080365 B = 8995.058590 C =10194.080037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.081 4.081 3 C -0.075 4.075 4 C -0.084 4.084 5 C -0.102 4.102 6 C -0.111 4.111 7 C -0.111 4.111 8 C -0.082 4.082 9 C 0.117 3.883 10 N -0.442 5.442 11 C 0.126 3.874 12 C 0.562 3.438 13 O -0.516 6.516 14 N -0.697 5.697 15 C 0.115 3.885 16 H 0.084 0.916 17 C -0.116 4.116 18 C -0.130 4.130 19 C 0.142 3.858 20 N -0.588 5.588 21 C -0.254 4.254 22 H 0.067 0.933 23 C 0.005 3.995 24 N -0.899 5.899 25 Si 0.902 3.098 26 H -0.277 1.277 27 H -0.288 1.288 28 H -0.291 1.291 29 C 0.167 3.833 30 H 0.078 0.922 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.137 0.863 38 H 0.402 0.598 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.055 0.945 42 H 0.060 0.940 43 H 0.018 0.982 44 H 0.055 0.945 45 H 0.253 0.747 46 H 0.095 0.905 47 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.667 13.988 9.511 21.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.084 4.084 3 C -0.101 4.101 4 C -0.086 4.086 5 C -0.121 4.121 6 C -0.129 4.129 7 C -0.131 4.131 8 C -0.100 4.100 9 C -0.007 4.007 10 N -0.153 5.153 11 C -0.028 4.028 12 C 0.345 3.655 13 O -0.392 6.392 14 N -0.346 5.346 15 C 0.010 3.990 16 H 0.102 0.898 17 C -0.154 4.154 18 C -0.170 4.170 19 C 0.016 3.984 20 N -0.311 5.311 21 C -0.384 4.384 22 H 0.084 0.916 23 C -0.193 4.193 24 N -0.543 5.543 25 Si 0.732 3.268 26 H -0.202 1.202 27 H -0.214 1.214 28 H -0.218 1.218 29 C 0.040 3.960 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.124 0.876 33 H 0.161 0.839 34 H 0.148 0.852 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.237 0.763 39 H 0.078 0.922 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.036 0.964 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.114 0.886 47 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 13.235 13.256 9.442 20.977 hybrid contribution -0.648 1.045 -0.316 1.270 sum 12.587 14.301 9.127 21.124 Atomic orbital electron populations 1.21118 0.88592 1.03643 1.04198 1.20609 0.98789 0.92036 0.96922 1.21348 0.92365 0.98473 0.97887 1.18959 0.94238 0.94537 1.00846 1.20981 0.94089 0.97067 0.99971 1.20963 0.94635 0.98035 0.99264 1.20891 1.00410 0.92043 0.99716 1.20876 0.91072 0.99460 0.98622 1.18853 0.94183 0.87773 0.99890 1.67843 1.06600 1.30533 1.10305 1.21457 0.89435 0.94331 0.97598 1.17810 0.86782 0.82910 0.77964 1.90777 1.12801 1.86167 1.49411 1.45959 1.11115 1.05727 1.71831 1.22064 0.94020 0.80356 1.02574 0.89810 1.21673 0.98276 0.95483 0.99982 1.21998 0.99184 0.95538 1.00290 1.20960 0.94773 0.91377 0.91328 1.43972 1.13889 1.01153 1.72107 1.19189 0.88539 1.15175 1.15489 0.91566 1.25048 0.97956 1.00539 0.95804 1.70028 1.32708 1.28210 1.23346 0.86236 0.85510 0.77675 0.77426 1.20218 1.21429 1.21809 1.21096 0.96978 0.89042 0.88839 0.90385 0.92357 0.87568 0.83864 0.85191 0.85531 0.85241 0.84473 0.76284 0.92169 0.93017 0.92610 0.92103 0.96399 0.92618 0.93739 0.88641 0.96439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.66 8.67 36.01 0.31 -1.35 16 2 C -0.08 -1.16 5.89 -104.49 -0.62 -1.77 16 3 C -0.07 -0.87 9.50 -39.26 -0.37 -1.24 16 4 C -0.08 -0.98 5.75 -106.71 -0.61 -1.60 16 5 C -0.10 -0.90 9.77 -39.51 -0.39 -1.28 16 6 C -0.11 -0.85 9.96 -39.89 -0.40 -1.24 16 7 C -0.11 -0.89 9.94 -39.94 -0.40 -1.29 16 8 C -0.08 -0.85 9.99 -39.41 -0.39 -1.25 16 9 C 0.12 1.54 6.61 -84.85 -0.56 0.98 16 10 N -0.44 -6.66 9.48 -7.54 -0.07 -6.73 16 11 C 0.13 2.05 6.75 -82.96 -0.56 1.49 16 12 C 0.56 10.57 7.71 -12.13 -0.09 10.47 16 13 O -0.52 -11.09 12.89 5.36 0.07 -11.02 16 14 N -0.70 -12.50 5.07 -54.50 -0.28 -12.77 16 15 C 0.11 2.31 2.60 -67.81 -0.18 2.13 16 16 H 0.08 1.86 7.58 -51.93 -0.39 1.47 16 17 C -0.12 -1.94 5.35 -26.69 -0.14 -2.09 16 18 C -0.13 -2.24 6.08 -26.61 -0.16 -2.40 16 19 C 0.14 2.98 6.51 -3.71 -0.02 2.96 16 20 N -0.59 -15.09 2.99 -172.31 -0.52 -15.61 16 21 C -0.25 -7.17 9.59 -15.06 -0.14 -7.31 16 22 H 0.07 1.83 7.88 -52.49 -0.41 1.41 16 23 C 0.01 0.16 4.93 -17.43 -0.09 0.07 16 24 N -0.90 -26.94 11.17 55.49 0.62 -26.33 16 25 Si 0.90 22.51 29.59 -169.99 -5.03 17.49 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 29 C 0.17 4.15 4.88 -3.71 -0.02 4.13 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.06 0.65 8.04 -51.93 -0.42 0.23 16 32 H 0.11 1.84 5.81 -51.93 -0.30 1.54 16 33 H 0.14 1.20 8.06 -52.49 -0.42 0.77 16 34 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 38 H 0.40 6.37 7.92 -40.82 -0.32 6.05 16 39 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 43 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 45 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.10 2.76 6.04 -51.93 -0.31 2.44 16 47 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 379.78 15.07 5.72 5.72 Total: -1.00 -32.93 379.78 -11.10 -44.02 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -6.78 Total: 5.84 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -4.83 Total: -0.61 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.24 Total: -61.44 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: 0.07 Total: -11.02 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.93 -11.10 -44.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007984877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.887 kcal (2) G-P(sol) polarization free energy of solvation -32.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds