Wall clock time and date at job start Tue Mar 31 2020 22:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36536 * 120.09004 * 2 1 4 4 C 1.40724 * 118.23822 * 180.02562 * 3 2 1 5 5 C 1.40424 * 121.28056 * 180.02562 * 4 3 2 6 6 C 1.36136 * 119.64698 * 179.97438 * 5 4 3 7 7 C 1.39433 * 120.91928 * 0.03830 * 6 5 4 8 8 C 1.35995 * 121.08946 * 359.97438 * 7 6 5 9 9 C 1.40823 * 119.73486 * 359.97438 * 8 7 6 10 10 N 1.33246 * 120.98970 * 180.02562 * 9 8 7 11 11 C 1.31902 * 121.29826 * 179.97438 * 10 9 8 12 12 C 1.48277 * 119.23510 * 179.97438 * 11 10 9 13 13 O 1.21503 * 119.99674 * 174.11842 * 12 11 10 14 14 N 1.34778 * 120.00438 * 354.12438 * 12 11 10 15 15 C 1.46498 * 120.00072 * 179.97438 * 14 12 11 16 16 H 1.09005 * 109.49475 * 324.99492 * 15 14 12 17 17 C 1.53040 * 109.49757 * 204.93605 * 15 14 12 18 18 C 1.53041 * 109.53974 * 178.68280 * 17 15 14 19 19 C 1.53190 * 109.30964 * 61.36194 * 18 17 15 20 20 N 1.46931 * 108.77826 * 305.36435 * 19 18 17 21 21 C 1.36932 * 120.62842 * 233.61319 * 20 19 18 22 22 H 1.07997 * 120.00376 * 28.00369 * 21 20 19 23 23 C 1.38819 * 120.00074 * 208.00034 * 21 20 19 24 24 N 1.31623 * 119.99709 * 16.65130 * 23 21 20 25 25 Si 1.86797 * 120.00261 * 196.65555 * 23 21 20 26 26 H 1.48504 * 109.47046 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.46826 * 119.99661 * 25 23 21 28 28 H 1.48493 * 109.47146 * 239.99798 * 25 23 21 29 29 C 1.46928 * 118.76145 * 53.59200 * 20 19 18 30 30 H 1.09000 * 109.46985 * 263.05361 * 1 2 3 31 31 H 1.08997 * 109.47063 * 23.04967 * 1 2 3 32 32 H 1.08998 * 109.47394 * 143.05435 * 1 2 3 33 33 H 1.07997 * 120.88311 * 0.04707 * 3 2 1 34 34 H 1.07996 * 120.18069 * 359.97438 * 5 4 3 35 35 H 1.08007 * 119.53848 * 180.02562 * 6 5 4 36 36 H 1.08001 * 119.45268 * 179.97438 * 7 6 5 37 37 H 1.07998 * 120.12789 * 180.02562 * 8 7 6 38 38 H 0.96999 * 119.99496 * 359.97438 * 14 12 11 39 39 H 1.09006 * 109.45502 * 298.70093 * 17 15 14 40 40 H 1.08998 * 109.46054 * 58.65825 * 17 15 14 41 41 H 1.09003 * 109.49620 * 181.31101 * 18 17 15 42 42 H 1.08998 * 109.49642 * 301.37735 * 18 17 15 43 43 H 1.09004 * 109.58980 * 65.15393 * 19 18 17 44 44 H 1.09006 * 109.58439 * 185.43746 * 19 18 17 45 45 H 0.96994 * 119.99797 * 180.02562 * 24 23 21 46 46 H 1.09006 * 109.61419 * 186.64254 * 29 20 19 47 47 H 1.08994 * 109.56383 * 66.21400 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1915 1.1814 0.0000 4 6 3.5980 1.1359 -0.0006 5 6 4.3656 2.3118 -0.0001 6 6 5.7244 2.2290 -0.0001 7 6 6.3668 0.9915 -0.0014 8 6 5.6567 -0.1683 -0.0022 9 6 4.2491 -0.1255 -0.0011 10 7 3.5287 -1.2464 -0.0013 11 6 2.2101 -1.2134 0.0002 12 6 1.4537 -2.4888 -0.0007 13 8 0.2437 -2.4775 0.1085 14 7 2.1085 -3.6605 -0.1225 15 6 1.3612 -4.9206 -0.1228 16 1 0.5084 -4.8380 0.5511 17 6 2.2742 -6.0560 0.3456 18 6 1.4855 -7.3672 0.3771 19 6 0.9916 -7.6952 -1.0355 20 7 0.2330 -6.5469 -1.5499 21 6 -1.0396 -6.7094 -2.0285 22 1 -1.6610 -7.5076 -1.6502 23 6 -1.5311 -5.8482 -3.0000 24 7 -0.7022 -5.0977 -3.6943 25 14 -3.3688 -5.7542 -3.3217 26 1 -4.0787 -6.6913 -2.4144 27 1 -3.8446 -4.3696 -3.0733 28 1 -3.6439 -6.1266 -4.7326 29 6 0.8652 -5.2206 -1.5408 30 1 -0.3633 -0.1243 1.0201 31 1 -0.3633 0.9456 -0.4023 32 1 -0.3634 -0.8213 -0.6177 33 1 1.6675 2.1257 0.0008 34 1 3.8805 3.2767 0.0004 35 1 6.3130 3.1346 0.0007 36 1 7.4461 0.9535 -0.0018 37 1 6.1703 -1.1184 -0.0028 38 1 3.0745 -3.6695 -0.2100 39 1 3.1141 -6.1539 -0.3423 40 1 2.6477 -5.8328 1.3450 41 1 2.1300 -8.1710 0.7330 42 1 0.6316 -7.2621 1.0463 43 1 1.8451 -7.8899 -1.6850 44 1 0.3491 -8.5752 -1.0027 45 1 -1.0456 -4.4956 -4.3728 46 1 0.1376 -4.4664 -1.8407 47 1 1.7081 -5.2133 -2.2319 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007984877.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:56 Heat of formation + Delta-G solvation = 20.170510 kcal Electronic energy + Delta-G solvation = -29240.605560 eV Core-core repulsion = 25387.712448 eV Total energy + Delta-G solvation = -3852.893112 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.19455 -40.77373 -39.11344 -37.88897 -36.06631 -35.13438 -34.36646 -32.64262 -32.00573 -31.53817 -30.24220 -28.04510 -27.26447 -26.38053 -24.01098 -23.81169 -23.38905 -23.02300 -21.74443 -21.08192 -19.28372 -18.95474 -18.71926 -17.70600 -17.16782 -16.73595 -16.52770 -16.34019 -15.79564 -15.47255 -15.41691 -15.37906 -15.15065 -14.87777 -14.68676 -14.30043 -14.14532 -14.07483 -13.96595 -13.92572 -13.55925 -13.19108 -12.96394 -12.67236 -12.66245 -12.59891 -12.49395 -12.48067 -12.25458 -12.04200 -11.70928 -11.59512 -11.39896 -11.29391 -11.08931 -10.58602 -10.48637 -10.17495 -9.71308 -9.21458 -8.70884 -7.89735 -5.36633 -0.86499 -0.36092 0.91667 1.38788 1.41067 1.44692 1.53858 1.99667 2.22068 2.48542 2.94642 3.05812 3.26563 3.51568 3.63072 3.69093 3.74461 3.86089 3.94146 4.09574 4.10905 4.20924 4.24988 4.35937 4.40503 4.45865 4.56709 4.59969 4.73393 4.78618 4.79228 4.89828 4.93250 5.03710 5.06885 5.08098 5.16856 5.18189 5.26467 5.31479 5.37576 5.42414 5.48034 5.50609 5.57408 5.60775 5.74214 5.87280 6.32992 6.40643 6.68799 7.09212 7.17447 7.82839 8.33045 9.15293 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014209 B = 0.003112 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.080365 B = 8995.058590 C =10194.080037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.107 4.107 3 C -0.058 4.058 4 C -0.095 4.095 5 C -0.105 4.105 6 C -0.100 4.100 7 C -0.094 4.094 8 C -0.106 4.106 9 C 0.090 3.910 10 N -0.453 5.453 11 C 0.095 3.905 12 C 0.555 3.445 13 O -0.554 6.554 14 N -0.692 5.692 15 C 0.130 3.870 16 H 0.058 0.942 17 C -0.108 4.108 18 C -0.119 4.119 19 C 0.135 3.865 20 N -0.609 5.609 21 C -0.263 4.263 22 H 0.070 0.930 23 C -0.052 4.052 24 N -0.932 5.932 25 Si 0.964 3.036 26 H -0.262 1.262 27 H -0.296 1.296 28 H -0.287 1.287 29 C 0.182 3.818 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.063 0.937 33 H 0.181 0.819 34 H 0.162 0.838 35 H 0.166 0.834 36 H 0.163 0.837 37 H 0.142 0.858 38 H 0.413 0.587 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.020 0.980 44 H 0.059 0.941 45 H 0.247 0.753 46 H 0.046 0.954 47 H -0.006 1.006 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.402 16.082 10.987 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.110 4.110 3 C -0.083 4.083 4 C -0.097 4.097 5 C -0.123 4.123 6 C -0.118 4.118 7 C -0.113 4.113 8 C -0.124 4.124 9 C -0.034 4.034 10 N -0.165 5.165 11 C -0.057 4.057 12 C 0.341 3.659 13 O -0.432 6.432 14 N -0.342 5.342 15 C 0.024 3.976 16 H 0.076 0.924 17 C -0.146 4.146 18 C -0.159 4.159 19 C 0.010 3.990 20 N -0.333 5.333 21 C -0.393 4.393 22 H 0.088 0.912 23 C -0.248 4.248 24 N -0.578 5.578 25 Si 0.792 3.208 26 H -0.186 1.186 27 H -0.223 1.223 28 H -0.213 1.213 29 C 0.055 3.945 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.198 0.802 34 H 0.180 0.820 35 H 0.183 0.817 36 H 0.181 0.819 37 H 0.159 0.841 38 H 0.250 0.750 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.012 0.988 Dipole moment (debyes) X Y Z Total from point charges 16.002 15.314 10.944 24.705 hybrid contribution -1.257 0.528 -0.780 1.570 sum 14.746 15.842 10.164 23.910 Atomic orbital electron populations 1.20938 0.89066 1.03357 1.03248 1.20642 0.98651 0.92526 0.99199 1.21727 0.92619 0.98668 0.95319 1.19287 0.94560 0.95219 1.00655 1.21368 0.94665 0.97092 0.99183 1.21492 0.94550 0.99229 0.96534 1.21367 1.02081 0.91339 0.96558 1.21078 0.90044 1.01019 1.00288 1.19364 0.95381 0.87971 1.00690 1.67717 1.06045 1.32154 1.10570 1.21064 0.90128 0.93442 1.01095 1.18381 0.86645 0.84067 0.76813 1.90752 1.14534 1.86947 1.50966 1.45838 1.11456 1.05079 1.71834 1.21629 0.94614 0.82676 0.98686 0.92355 1.21649 0.97526 0.93567 1.01817 1.21895 0.99736 0.96961 0.97284 1.21191 0.94411 0.89918 0.93497 1.44258 1.13870 1.02730 1.72436 1.19548 0.89994 1.14876 1.14871 0.91202 1.25841 1.01985 1.00769 0.96170 1.70194 1.34339 1.29141 1.24136 0.85252 0.80785 0.77215 0.77535 1.18629 1.22342 1.21332 1.20743 0.94631 0.87893 0.91228 0.90804 0.89400 0.91860 0.80189 0.82024 0.81669 0.81924 0.84062 0.75010 0.91088 0.89836 0.88325 0.92708 0.96200 0.92294 0.94446 0.93542 0.98762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.27 8.67 71.24 0.62 -2.65 16 2 C -0.11 -3.19 5.89 -19.78 -0.12 -3.31 16 3 C -0.06 -1.26 9.50 22.48 0.21 -1.05 16 4 C -0.10 -2.04 5.75 -21.22 -0.12 -2.16 16 5 C -0.10 -1.39 9.77 22.31 0.22 -1.17 16 6 C -0.10 -1.01 9.96 22.07 0.22 -0.79 16 7 C -0.09 -1.13 9.94 22.04 0.22 -0.91 16 8 C -0.11 -2.02 9.99 22.38 0.22 -1.79 16 9 C 0.09 2.32 6.61 40.48 0.27 2.59 16 10 N -0.45 -14.17 9.48 -177.78 -1.69 -15.86 16 11 C 0.09 3.30 6.75 42.29 0.29 3.58 16 12 C 0.56 22.77 7.71 86.91 0.67 23.44 16 13 O -0.55 -26.32 12.89 -3.73 -0.05 -26.37 16 14 N -0.69 -26.45 5.07 -444.62 -2.25 -28.70 16 15 C 0.13 5.46 2.60 45.07 0.12 5.58 16 16 H 0.06 2.76 7.58 -2.38 -0.02 2.74 16 17 C -0.11 -3.49 5.35 30.62 0.16 -3.33 16 18 C -0.12 -3.91 6.08 30.67 0.19 -3.72 16 19 C 0.13 5.65 6.51 86.36 0.56 6.21 16 20 N -0.61 -32.48 2.99 -699.07 -2.09 -34.57 16 21 C -0.26 -15.35 9.59 84.04 0.81 -14.55 16 22 H 0.07 3.94 7.88 -2.91 -0.02 3.92 16 23 C -0.05 -3.13 4.93 84.86 0.42 -2.72 16 24 N -0.93 -59.24 11.17 21.65 0.24 -59.00 16 25 Si 0.96 48.22 29.59 68.60 2.03 50.25 16 26 H -0.26 -12.32 7.11 99.48 0.71 -11.62 16 27 H -0.30 -15.09 7.11 99.48 0.71 -14.39 16 28 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 29 C 0.18 9.63 4.88 86.36 0.42 10.05 16 30 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.09 1.98 8.04 -2.39 -0.02 1.96 16 32 H 0.06 2.45 5.81 -2.39 -0.01 2.44 16 33 H 0.18 2.42 8.06 -2.91 -0.02 2.39 16 34 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 35 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 36 H 0.16 0.88 8.06 -2.91 -0.02 0.86 16 37 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 38 H 0.41 13.73 7.92 -92.71 -0.73 12.99 16 39 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 40 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 41 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.06 2.39 7.94 -2.38 -0.02 2.37 16 45 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 46 H 0.05 2.91 6.04 -2.38 -0.01 2.89 16 47 H -0.01 -0.32 8.14 -2.39 -0.02 -0.33 16 Total: -1.00 -79.77 379.78 1.82 -77.95 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.25 Total: 23.00 kcal Atomic # 6 Polarization: 7.94 SS G_CDS: 5.37 Total: 13.31 kcal Atomic # 7 Polarization: -132.34 SS G_CDS: -5.79 Total: -138.13 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.05 Total: -26.37 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -79.77 1.82 -77.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007984877.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.122 kcal (2) G-P(sol) polarization free energy of solvation -79.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds