Wall clock time and date at job start Tue Mar 31 2020 22:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39314 * 119.11597 * 2 1 4 4 C 1.36578 * 119.90806 * 180.02562 * 3 2 1 5 5 C 1.40893 * 118.15690 * 0.02562 * 4 3 2 6 6 C 1.40178 * 121.22700 * 180.25544 * 5 4 3 7 7 C 1.38548 * 119.40401 * 180.26799 * 6 5 4 8 8 C 1.47765 * 119.80711 * 179.75550 * 7 6 5 9 9 O 1.21558 * 120.00209 * 359.71682 * 8 7 6 10 10 N 1.34780 * 119.99950 * 179.72094 * 8 7 6 11 11 C 1.46501 * 119.99603 * 179.72201 * 10 8 7 12 12 H 1.08999 * 109.50072 * 325.27144 * 11 10 8 13 13 C 1.53045 * 109.49509 * 205.21078 * 11 10 8 14 14 C 1.53041 * 109.53977 * 178.71754 * 13 11 10 15 15 C 1.53188 * 109.33805 * 61.31705 * 14 13 11 16 16 N 1.46928 * 108.77393 * 305.37994 * 15 14 13 17 17 C 1.36940 * 120.62953 * 233.58290 * 16 15 14 18 18 H 1.08004 * 119.99750 * 27.71006 * 17 16 15 19 19 C 1.38809 * 119.99973 * 207.69588 * 17 16 15 20 20 N 1.31619 * 120.00258 * 17.36756 * 19 17 16 21 21 Si 1.86805 * 119.99930 * 197.36261 * 19 17 16 22 22 H 1.48497 * 109.47362 * 90.00688 * 21 19 17 23 23 H 1.48510 * 109.46944 * 210.00312 * 21 19 17 24 24 H 1.48499 * 109.47135 * 330.00264 * 21 19 17 25 25 C 1.46924 * 118.74156 * 53.61443 * 16 15 14 26 26 C 1.40632 * 120.39097 * 359.47105 * 7 6 5 27 27 C 1.35702 * 120.91733 * 0.26092 * 26 7 6 28 28 C 1.40763 * 120.11424 * 0.02562 * 27 26 7 29 29 N 1.31116 * 119.11367 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47040 * 89.99752 * 1 2 3 31 31 H 1.08993 * 109.47301 * 209.99416 * 1 2 3 32 32 H 1.09000 * 109.47328 * 329.99670 * 1 2 3 33 33 H 1.08006 * 120.04512 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.92197 * 180.02562 * 4 3 2 35 35 H 1.08006 * 120.30437 * 359.97438 * 6 5 4 36 36 H 0.96998 * 120.00300 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.45915 * 298.70369 * 13 11 10 38 38 H 1.08999 * 109.45967 * 58.66032 * 13 11 10 39 39 H 1.09000 * 109.46994 * 301.36681 * 14 13 11 40 40 H 1.09003 * 109.52349 * 181.30264 * 14 13 11 41 41 H 1.08999 * 109.58566 * 185.59520 * 15 14 13 42 42 H 1.08997 * 109.58856 * 65.16657 * 15 14 13 43 43 H 0.97002 * 120.00251 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.58722 * 186.60669 * 25 16 15 45 45 H 1.08996 * 109.70522 * 66.24020 * 25 16 15 46 46 H 1.08001 * 119.54159 * 180.28267 * 26 7 6 47 47 H 1.07999 * 119.94122 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5506 1.2360 -0.0005 5 6 4.2325 0.0031 -0.0016 6 6 5.6332 -0.0526 0.0031 7 6 6.2649 -1.2857 -0.0038 8 6 7.7409 -1.3548 -0.0043 9 8 8.3973 -0.3317 -0.0039 10 7 8.3595 -2.5523 -0.0054 11 6 9.8229 -2.6207 -0.0120 12 1 10.2231 -1.7951 -0.6005 13 6 10.2693 -3.9493 -0.6266 14 6 11.7981 -4.0083 -0.6634 15 6 12.3434 -3.9286 0.7660 16 7 11.8013 -2.7257 1.4124 17 6 12.6367 -1.8090 1.9931 18 1 13.6469 -1.6925 1.6292 19 6 12.1851 -1.0295 3.0491 20 7 11.1067 -1.3845 3.7151 21 14 13.1078 0.5235 3.5250 22 1 12.5612 1.6765 2.7656 23 1 12.9466 0.7685 4.9809 24 1 14.5491 0.3599 3.2073 25 6 10.3458 -2.5252 1.4247 26 6 5.5097 -2.4720 -0.0043 27 6 4.1532 -2.4350 -0.0033 28 6 3.4804 -1.1985 -0.0023 29 7 2.1450 -1.1455 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3634 0.8899 0.5139 33 1 1.6312 2.1444 -0.0004 34 1 4.0927 2.1700 -0.0001 35 1 6.2148 0.8574 0.0073 36 1 7.8358 -3.3687 -0.0054 37 1 9.8890 -4.7741 -0.0239 38 1 9.8778 -4.0301 -1.6406 39 1 12.1801 -3.1699 -1.2458 40 1 12.1156 -4.9447 -1.1222 41 1 13.4315 -3.8701 0.7392 42 1 12.0365 -4.8131 1.3240 43 1 10.7913 -0.8399 4.4533 44 1 10.1160 -1.5409 1.8325 45 1 9.8742 -3.2938 2.0370 46 1 6.0163 -3.4258 -0.0051 47 1 3.5888 -3.3558 -0.0033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008954974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:55 Heat of formation + Delta-G solvation = 34.904203 kcal Electronic energy + Delta-G solvation = -28599.212187 eV Core-core repulsion = 24746.957975 eV Total energy + Delta-G solvation = -3852.254212 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.11593 -39.58497 -37.61483 -36.77840 -34.26013 -33.70888 -32.76259 -32.20980 -30.25164 -30.05202 -29.24627 -27.81387 -25.26241 -24.11322 -23.79006 -22.30372 -22.18580 -21.70705 -20.40057 -19.42203 -18.24965 -17.85476 -16.78836 -16.55341 -15.99753 -15.42538 -15.07453 -14.90503 -14.59551 -14.34628 -14.09836 -14.00339 -13.88321 -13.58498 -13.50144 -13.24284 -13.20564 -12.97011 -12.54033 -12.42639 -12.32469 -12.20796 -11.86697 -11.61384 -11.43610 -11.00778 -10.81154 -10.74790 -10.72164 -10.48071 -10.23577 -10.00951 -9.93265 -9.74820 -9.55172 -9.47022 -8.93264 -8.59924 -8.41724 -8.37948 -6.65148 -5.74253 -3.17575 0.07056 0.47833 1.74110 2.34393 3.38189 3.44609 3.47280 3.50842 3.51334 3.87751 3.97444 4.31722 4.41706 4.54624 4.55213 4.72071 4.81878 4.93551 4.99806 5.14025 5.21894 5.23694 5.35269 5.40454 5.53064 5.54959 5.61725 5.63236 5.65135 5.72102 5.78384 5.84038 6.05829 6.08537 6.14145 6.16413 6.29485 6.33776 6.42187 6.49095 6.56350 6.69519 6.77114 6.91325 6.96489 7.30106 7.67286 7.73654 7.83306 7.89727 8.48735 8.58050 9.24081 9.88175 10.42824 11.33641 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.002659 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.421675 B =10527.467318 C =11822.809637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.163 3.837 3 C -0.180 4.180 4 C -0.042 4.042 5 C -0.117 4.117 6 C -0.027 4.027 7 C -0.126 4.126 8 C 0.552 3.448 9 O -0.527 6.527 10 N -0.713 5.713 11 C 0.117 3.883 12 H 0.083 0.917 13 C -0.116 4.116 14 C -0.131 4.131 15 C 0.142 3.858 16 N -0.588 5.588 17 C -0.256 4.256 18 H 0.067 0.933 19 C 0.006 3.994 20 N -0.899 5.899 21 Si 0.902 3.098 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.279 1.279 25 C 0.166 3.834 26 C -0.071 4.071 27 C -0.102 4.102 28 C 0.147 3.853 29 N -0.480 5.480 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.138 0.862 34 H 0.143 0.857 35 H 0.146 0.854 36 H 0.392 0.608 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.055 0.945 42 H 0.018 0.982 43 H 0.253 0.747 44 H 0.095 0.905 45 H 0.018 0.982 46 H 0.134 0.866 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.609 -0.821 -10.134 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.010 3.990 3 C -0.200 4.200 4 C -0.068 4.068 5 C -0.119 4.119 6 C -0.046 4.046 7 C -0.129 4.129 8 C 0.338 3.662 9 O -0.404 6.404 10 N -0.364 5.364 11 C 0.012 3.988 12 H 0.101 0.899 13 C -0.155 4.155 14 C -0.171 4.171 15 C 0.016 3.984 16 N -0.311 5.311 17 C -0.386 4.386 18 H 0.084 0.916 19 C -0.193 4.193 20 N -0.543 5.543 21 Si 0.732 3.268 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.204 1.204 25 C 0.039 3.961 26 C -0.091 4.091 27 C -0.121 4.121 28 C 0.025 3.975 29 N -0.190 5.190 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.096 0.904 33 H 0.156 0.844 34 H 0.161 0.839 35 H 0.164 0.836 36 H 0.226 0.774 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.036 0.964 43 H 0.063 0.937 44 H 0.113 0.887 45 H 0.036 0.964 46 H 0.152 0.848 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -19.523 -0.868 -9.962 21.935 hybrid contribution 0.593 1.156 0.359 1.348 sum -18.930 0.289 -9.602 21.228 Atomic orbital electron populations 1.20795 0.88579 1.03752 1.03312 1.21546 0.97189 0.88267 0.92015 1.21705 0.94976 0.99292 1.04009 1.21588 0.94500 0.97411 0.93267 1.18803 0.94387 0.94311 1.04434 1.21475 0.92175 0.98341 0.92652 1.20107 0.93873 0.93967 1.04984 1.18094 0.86683 0.84214 0.77186 1.90821 1.66415 1.34039 1.49127 1.46000 1.08472 1.07394 1.74532 1.22022 0.77052 0.97749 1.02022 0.89856 1.21684 0.97292 0.97059 0.99419 1.22001 0.94371 1.00610 1.00085 1.20961 0.97110 0.89932 0.90436 1.43968 1.01779 1.20424 1.64922 1.19156 0.96087 1.13219 1.10108 0.91553 1.25037 0.98220 1.00384 0.95675 1.70017 1.25502 1.37736 1.21002 0.86296 0.79319 0.83954 0.77234 1.21260 1.21795 1.20413 1.21095 0.83254 1.02672 0.89077 1.20986 0.93745 0.97774 0.96599 1.20628 0.93687 0.96505 1.01261 1.18938 0.89043 0.92930 0.96559 1.67885 1.08356 1.28737 1.14006 0.90076 0.90225 0.90440 0.84399 0.83906 0.83619 0.77401 0.92221 0.93039 0.92102 0.92589 0.92600 0.96382 0.93662 0.88667 0.96440 0.84826 0.84256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.14 36.01 0.37 -0.29 16 2 C 0.16 1.58 6.78 -82.50 -0.56 1.02 16 3 C -0.18 -1.54 9.64 -39.78 -0.38 -1.93 16 4 C -0.04 -0.42 9.89 -39.18 -0.39 -0.80 16 5 C -0.12 -1.47 5.74 -106.82 -0.61 -2.08 16 6 C -0.03 -0.37 9.35 -38.74 -0.36 -0.73 16 7 C -0.13 -1.82 5.87 -104.99 -0.62 -2.44 16 8 C 0.55 9.91 7.74 -12.36 -0.10 9.81 16 9 O -0.53 -11.78 15.97 5.31 0.08 -11.69 16 10 N -0.71 -11.71 5.03 -54.65 -0.27 -11.98 16 11 C 0.12 2.27 2.60 -67.81 -0.18 2.09 16 12 H 0.08 1.85 7.57 -51.93 -0.39 1.45 16 13 C -0.12 -1.86 5.36 -26.69 -0.14 -2.00 16 14 C -0.13 -2.20 6.08 -26.61 -0.16 -2.36 16 15 C 0.14 2.94 6.52 -3.71 -0.02 2.92 16 16 N -0.59 -14.98 2.99 -172.33 -0.52 -15.50 16 17 C -0.26 -7.22 9.59 -15.06 -0.14 -7.37 16 18 H 0.07 1.83 7.89 -52.48 -0.41 1.41 16 19 C 0.01 0.17 4.91 -17.43 -0.09 0.09 16 20 N -0.90 -26.99 11.19 55.49 0.62 -26.37 16 21 Si 0.90 22.65 29.59 -169.99 -5.03 17.62 16 22 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 23 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.17 4.06 4.89 -3.71 -0.02 4.05 16 26 C -0.07 -0.82 9.44 -39.59 -0.37 -1.20 16 27 C -0.10 -1.17 9.95 -39.54 -0.39 -1.57 16 28 C 0.15 1.88 6.61 -84.78 -0.56 1.32 16 29 N -0.48 -5.87 10.23 -7.16 -0.07 -5.94 16 30 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 33 H 0.14 0.75 8.06 -52.48 -0.42 0.32 16 34 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.15 1.99 7.62 -52.48 -0.40 1.59 16 36 H 0.39 4.98 6.59 -40.82 -0.27 4.71 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.10 2.75 6.04 -51.93 -0.31 2.44 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 46 H 0.13 1.20 6.35 -52.49 -0.33 0.87 16 47 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 383.06 15.07 5.77 5.77 Total: -1.00 -34.99 383.06 -10.89 -45.87 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -6.74 Total: 3.69 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: -4.73 Total: -1.46 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.24 Total: -59.80 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.08 Total: -11.69 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.03 Total: 17.62 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.99 -10.89 -45.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008954974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.779 kcal (2) G-P(sol) polarization free energy of solvation -34.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds