Wall clock time and date at job start Tue Mar 31 2020 22:29:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39314 * 119.11597 * 2 1 4 4 C 1.36578 * 119.90806 * 180.02562 * 3 2 1 5 5 C 1.40893 * 118.15690 * 0.02562 * 4 3 2 6 6 C 1.40178 * 121.22700 * 180.25544 * 5 4 3 7 7 C 1.38548 * 119.40401 * 180.26799 * 6 5 4 8 8 C 1.47765 * 119.80711 * 179.75550 * 7 6 5 9 9 O 1.21558 * 120.00209 * 359.71682 * 8 7 6 10 10 N 1.34780 * 119.99950 * 179.72094 * 8 7 6 11 11 C 1.46501 * 119.99603 * 179.72201 * 10 8 7 12 12 H 1.08999 * 109.50072 * 325.27144 * 11 10 8 13 13 C 1.53045 * 109.49509 * 205.21078 * 11 10 8 14 14 C 1.53041 * 109.53977 * 178.71754 * 13 11 10 15 15 C 1.53188 * 109.33805 * 61.31705 * 14 13 11 16 16 N 1.46928 * 108.77393 * 305.37994 * 15 14 13 17 17 C 1.36940 * 120.62953 * 233.58290 * 16 15 14 18 18 H 1.08004 * 119.99750 * 27.71006 * 17 16 15 19 19 C 1.38809 * 119.99973 * 207.69588 * 17 16 15 20 20 N 1.31619 * 120.00258 * 17.36756 * 19 17 16 21 21 Si 1.86805 * 119.99930 * 197.36261 * 19 17 16 22 22 H 1.48497 * 109.47362 * 90.00688 * 21 19 17 23 23 H 1.48510 * 109.46944 * 210.00312 * 21 19 17 24 24 H 1.48499 * 109.47135 * 330.00264 * 21 19 17 25 25 C 1.46924 * 118.74156 * 53.61443 * 16 15 14 26 26 C 1.40632 * 120.39097 * 359.47105 * 7 6 5 27 27 C 1.35702 * 120.91733 * 0.26092 * 26 7 6 28 28 C 1.40763 * 120.11424 * 0.02562 * 27 26 7 29 29 N 1.31116 * 119.11367 * 179.97438 * 2 1 3 30 30 H 1.09004 * 109.47040 * 89.99752 * 1 2 3 31 31 H 1.08993 * 109.47301 * 209.99416 * 1 2 3 32 32 H 1.09000 * 109.47328 * 329.99670 * 1 2 3 33 33 H 1.08006 * 120.04512 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.92197 * 180.02562 * 4 3 2 35 35 H 1.08006 * 120.30437 * 359.97438 * 6 5 4 36 36 H 0.96998 * 120.00300 * 359.97438 * 10 8 7 37 37 H 1.09001 * 109.45915 * 298.70369 * 13 11 10 38 38 H 1.08999 * 109.45967 * 58.66032 * 13 11 10 39 39 H 1.09000 * 109.46994 * 301.36681 * 14 13 11 40 40 H 1.09003 * 109.52349 * 181.30264 * 14 13 11 41 41 H 1.08999 * 109.58566 * 185.59520 * 15 14 13 42 42 H 1.08997 * 109.58856 * 65.16657 * 15 14 13 43 43 H 0.97002 * 120.00251 * 179.97438 * 20 19 17 44 44 H 1.08996 * 109.58722 * 186.60669 * 25 16 15 45 45 H 1.08996 * 109.70522 * 66.24020 * 25 16 15 46 46 H 1.08001 * 119.54159 * 180.28267 * 26 7 6 47 47 H 1.07999 * 119.94122 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1849 1.2171 0.0000 4 6 3.5506 1.2360 -0.0005 5 6 4.2325 0.0031 -0.0016 6 6 5.6332 -0.0526 0.0031 7 6 6.2649 -1.2857 -0.0038 8 6 7.7409 -1.3548 -0.0043 9 8 8.3973 -0.3317 -0.0039 10 7 8.3595 -2.5523 -0.0054 11 6 9.8229 -2.6207 -0.0120 12 1 10.2231 -1.7951 -0.6005 13 6 10.2693 -3.9493 -0.6266 14 6 11.7981 -4.0083 -0.6634 15 6 12.3434 -3.9286 0.7660 16 7 11.8013 -2.7257 1.4124 17 6 12.6367 -1.8090 1.9931 18 1 13.6469 -1.6925 1.6292 19 6 12.1851 -1.0295 3.0491 20 7 11.1067 -1.3845 3.7151 21 14 13.1078 0.5235 3.5250 22 1 12.5612 1.6765 2.7656 23 1 12.9466 0.7685 4.9809 24 1 14.5491 0.3599 3.2073 25 6 10.3458 -2.5252 1.4247 26 6 5.5097 -2.4720 -0.0043 27 6 4.1532 -2.4350 -0.0033 28 6 3.4804 -1.1985 -0.0023 29 7 2.1450 -1.1455 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3634 0.8899 0.5139 33 1 1.6312 2.1444 -0.0004 34 1 4.0927 2.1700 -0.0001 35 1 6.2148 0.8574 0.0073 36 1 7.8358 -3.3687 -0.0054 37 1 9.8890 -4.7741 -0.0239 38 1 9.8778 -4.0301 -1.6406 39 1 12.1801 -3.1699 -1.2458 40 1 12.1156 -4.9447 -1.1222 41 1 13.4315 -3.8701 0.7392 42 1 12.0365 -4.8131 1.3240 43 1 10.7913 -0.8399 4.4533 44 1 10.1160 -1.5409 1.8325 45 1 9.8742 -3.2938 2.0370 46 1 6.0163 -3.4258 -0.0051 47 1 3.5888 -3.3558 -0.0033 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008954974.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:54 Heat of formation + Delta-G solvation = 12.325502 kcal Electronic energy + Delta-G solvation = -28600.191273 eV Core-core repulsion = 24746.957975 eV Total energy + Delta-G solvation = -3853.233298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.02662 -40.94320 -39.09466 -37.92323 -35.91275 -34.65261 -34.42549 -33.12679 -31.91244 -31.16241 -30.66342 -28.78153 -27.25491 -25.08747 -24.79298 -23.94305 -23.25938 -23.01620 -21.75071 -21.01722 -19.29907 -18.91852 -18.74170 -17.61728 -17.12629 -16.80837 -16.63843 -16.09518 -15.81296 -15.63556 -15.48633 -15.28765 -15.16704 -14.86162 -14.74436 -14.49877 -14.17441 -14.03521 -13.95580 -13.85197 -13.49333 -13.13933 -13.00942 -12.95002 -12.71138 -12.54717 -12.48400 -12.28097 -12.23777 -12.04850 -11.70932 -11.64479 -11.62394 -11.28078 -11.01199 -10.58112 -10.56035 -10.18619 -9.75468 -9.34889 -8.70945 -7.90712 -5.36365 -0.84990 -0.38409 0.82122 1.36725 1.39367 1.44616 1.50507 2.06741 2.27248 2.47801 3.01539 3.12752 3.25191 3.51152 3.55979 3.63458 3.78589 3.83109 3.93563 3.96563 4.00464 4.13595 4.24187 4.25709 4.36704 4.47726 4.59799 4.66311 4.79509 4.81321 4.81693 4.84180 4.91333 4.92524 4.98202 5.08812 5.16282 5.17715 5.19555 5.20711 5.25057 5.32386 5.40859 5.50515 5.52363 5.60669 5.72707 5.76425 6.34538 6.54948 6.85929 7.09779 7.22425 7.83668 8.32483 9.13884 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015112 B = 0.002659 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.421675 B =10527.467318 C =11822.809637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.159 3.841 3 C -0.170 4.170 4 C -0.052 4.052 5 C -0.135 4.135 6 C -0.033 4.033 7 C -0.146 4.146 8 C 0.549 3.451 9 O -0.583 6.583 10 N -0.700 5.700 11 C 0.131 3.869 12 H 0.052 0.948 13 C -0.107 4.107 14 C -0.122 4.122 15 C 0.135 3.865 16 N -0.610 5.610 17 C -0.263 4.263 18 H 0.069 0.931 19 C -0.052 4.052 20 N -0.931 5.931 21 Si 0.962 3.038 22 H -0.295 1.295 23 H -0.291 1.291 24 H -0.261 1.261 25 C 0.177 3.823 26 C -0.068 4.068 27 C -0.101 4.101 28 C 0.131 3.869 29 N -0.505 5.505 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.177 0.823 34 H 0.162 0.838 35 H 0.135 0.865 36 H 0.413 0.587 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.051 0.949 40 H 0.099 0.901 41 H 0.055 0.945 42 H 0.023 0.977 43 H 0.246 0.754 44 H 0.043 0.957 45 H 0.001 0.999 46 H 0.161 0.839 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.642 -1.786 -11.719 24.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.007 3.993 3 C -0.190 4.190 4 C -0.078 4.078 5 C -0.137 4.137 6 C -0.053 4.053 7 C -0.149 4.149 8 C 0.338 3.662 9 O -0.464 6.464 10 N -0.352 5.352 11 C 0.025 3.975 12 H 0.070 0.930 13 C -0.145 4.145 14 C -0.161 4.161 15 C 0.010 3.990 16 N -0.333 5.333 17 C -0.393 4.393 18 H 0.087 0.913 19 C -0.248 4.248 20 N -0.576 5.576 21 Si 0.790 3.210 22 H -0.222 1.222 23 H -0.218 1.218 24 H -0.185 1.185 25 C 0.050 3.950 26 C -0.088 4.088 27 C -0.119 4.119 28 C 0.010 3.990 29 N -0.215 5.215 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.194 0.806 34 H 0.180 0.820 35 H 0.152 0.848 36 H 0.251 0.749 37 H 0.095 0.905 38 H 0.106 0.894 39 H 0.070 0.930 40 H 0.117 0.883 41 H 0.074 0.926 42 H 0.041 0.959 43 H 0.055 0.945 44 H 0.061 0.939 45 H 0.019 0.981 46 H 0.178 0.822 47 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -21.563 -1.897 -11.576 24.548 hybrid contribution 1.072 1.498 0.841 2.025 sum -20.492 -0.399 -10.736 23.137 Atomic orbital electron populations 1.20926 0.85874 1.04888 1.04536 1.22306 0.99045 0.88105 0.89837 1.22135 0.94477 1.00509 1.01855 1.21915 0.95461 0.97267 0.93130 1.18947 0.93665 0.95713 1.05358 1.21501 0.93082 0.97881 0.92793 1.19906 0.91650 0.95574 1.07762 1.18689 0.88168 0.83670 0.75717 1.90783 1.67959 1.35908 1.51779 1.45788 1.07467 1.08124 1.73776 1.21561 0.78528 0.99237 0.98212 0.92963 1.21662 0.96818 0.94714 1.01337 1.21903 0.94687 1.02460 0.97035 1.21196 0.97305 0.87974 0.92544 1.44255 1.01898 1.21912 1.65278 1.19511 0.96521 1.13699 1.09573 0.91315 1.25802 0.99432 1.03278 0.96281 1.70173 1.27203 1.38677 1.21593 0.85346 0.79057 0.80082 0.76527 1.22203 1.21789 1.18494 1.20795 0.83348 0.99037 0.91799 1.21121 0.93849 0.97596 0.96205 1.20887 0.93584 0.97076 1.00370 1.19257 0.89740 0.93442 0.96584 1.67969 1.07893 1.30119 1.15553 0.88589 0.90580 0.87847 0.80597 0.82038 0.84755 0.74904 0.90470 0.89445 0.93044 0.88285 0.92604 0.95921 0.94459 0.93889 0.98083 0.82196 0.82109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 10.14 71.24 0.72 -0.23 16 2 C 0.16 2.72 6.78 42.93 0.29 3.01 16 3 C -0.17 -2.47 9.64 22.14 0.21 -2.26 16 4 C -0.05 -0.98 9.89 22.53 0.22 -0.76 16 5 C -0.13 -3.38 5.74 -21.29 -0.12 -3.50 16 6 C -0.03 -0.95 9.35 22.82 0.21 -0.73 16 7 C -0.15 -4.37 5.87 -20.10 -0.12 -4.49 16 8 C 0.55 20.71 7.74 86.76 0.67 21.38 16 9 O -0.58 -28.10 15.97 -3.90 -0.06 -28.16 16 10 N -0.70 -23.19 5.03 -445.10 -2.24 -25.43 16 11 C 0.13 5.16 2.60 45.07 0.12 5.28 16 12 H 0.05 2.41 7.57 -2.39 -0.02 2.39 16 13 C -0.11 -3.14 5.36 30.62 0.16 -2.98 16 14 C -0.12 -3.77 6.08 30.67 0.19 -3.58 16 15 C 0.13 5.47 6.52 86.36 0.56 6.03 16 16 N -0.61 -31.83 2.99 -699.11 -2.09 -33.92 16 17 C -0.26 -15.25 9.59 84.03 0.81 -14.44 16 18 H 0.07 3.86 7.89 -2.91 -0.02 3.83 16 19 C -0.05 -3.13 4.91 84.86 0.42 -2.71 16 20 N -0.93 -58.70 11.19 21.65 0.24 -58.45 16 21 Si 0.96 48.23 29.59 68.60 2.03 50.26 16 22 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 23 H -0.29 -14.48 7.11 99.48 0.71 -13.77 16 24 H -0.26 -12.16 7.11 99.48 0.71 -11.46 16 25 C 0.18 9.05 4.89 86.36 0.42 9.47 16 26 C -0.07 -1.53 9.44 22.27 0.21 -1.32 16 27 C -0.10 -2.21 9.95 22.30 0.22 -1.98 16 28 C 0.13 3.27 6.61 40.35 0.27 3.54 16 29 N -0.50 -11.61 10.23 -176.58 -1.81 -13.42 16 30 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.10 0.42 8.07 -2.39 -0.02 0.40 16 33 H 0.18 1.15 8.06 -2.91 -0.02 1.12 16 34 H 0.16 2.27 8.06 -2.91 -0.02 2.25 16 35 H 0.13 4.06 7.62 -2.91 -0.02 4.04 16 36 H 0.41 9.95 6.59 -92.71 -0.61 9.34 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 42 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 44 H 0.04 2.64 6.04 -2.39 -0.01 2.63 16 45 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.16 2.56 6.35 -2.91 -0.02 2.55 16 47 H 0.16 2.73 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -82.70 383.06 1.92 -80.79 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.38 Total: 18.60 kcal Atomic # 6 Polarization: 4.27 SS G_CDS: 5.47 Total: 9.74 kcal Atomic # 7 Polarization: -125.33 SS G_CDS: -5.90 Total: -131.22 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.06 Total: -28.16 kcal Atomic # 14 Polarization: 48.23 SS G_CDS: 2.03 Total: 50.26 kcal Total: -82.70 1.92 -80.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008954974.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.112 kcal (2) G-P(sol) polarization free energy of solvation -82.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.786 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds