Wall clock time and date at job start Tue Mar 31 2020 22:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39315 * 119.06028 * 2 1 4 4 C 1.38851 * 119.57831 * 179.97438 * 3 2 1 5 5 C 1.47906 * 121.11504 * 179.97438 * 4 3 2 6 6 O 1.21538 * 120.00070 * 174.43230 * 5 4 3 7 7 N 1.34777 * 119.99602 * 354.43271 * 5 4 3 8 8 C 1.46501 * 120.00030 * 180.02562 * 7 5 4 9 9 H 1.08996 * 109.49545 * 34.99872 * 8 7 5 10 10 C 1.53041 * 109.49955 * 155.06066 * 8 7 5 11 11 C 1.53040 * 109.53684 * 181.31348 * 10 8 7 12 12 C 1.53187 * 109.31538 * 298.63791 * 11 10 8 13 13 N 1.46932 * 108.77487 * 54.63610 * 12 11 10 14 14 C 1.36933 * 120.63100 * 126.38876 * 13 12 11 15 15 H 1.08000 * 120.00288 * 208.38857 * 14 13 12 16 16 C 1.38821 * 120.00165 * 28.38905 * 14 13 12 17 17 N 1.31621 * 119.99513 * 16.48926 * 16 14 13 18 18 Si 1.86798 * 120.00095 * 196.49124 * 16 14 13 19 19 H 1.48493 * 109.47004 * 60.00253 * 18 16 14 20 20 H 1.48505 * 109.46930 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47024 * 300.00009 * 18 16 14 22 22 C 1.46933 * 118.76240 * 306.40992 * 13 12 11 23 23 C 1.41829 * 117.77572 * 0.02562 * 4 3 2 24 24 C 1.40091 * 121.36065 * 179.97438 * 23 4 3 25 25 C 1.36252 * 119.64330 * 180.02562 * 24 23 4 26 26 C 1.39355 * 120.83204 * 0.02933 * 25 24 23 27 27 C 1.36062 * 121.04754 * 359.97438 * 26 25 24 28 28 C 1.40709 * 119.74717 * 0.26357 * 27 26 25 29 29 N 1.30967 * 119.05700 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.46944 * 89.99767 * 1 2 3 31 31 H 1.08999 * 109.46878 * 209.99650 * 1 2 3 32 32 H 1.08999 * 109.46743 * 329.99588 * 1 2 3 33 33 H 1.08002 * 120.20693 * 0.02562 * 3 2 1 34 34 H 0.97005 * 120.00558 * 359.97438 * 7 5 4 35 35 H 1.08999 * 109.46261 * 301.34241 * 10 8 7 36 36 H 1.09001 * 109.45555 * 61.29514 * 10 8 7 37 37 H 1.09001 * 109.49296 * 58.58974 * 11 10 8 38 38 H 1.09001 * 109.49370 * 178.65645 * 11 10 8 39 39 H 1.09000 * 109.58675 * 174.41883 * 12 11 10 40 40 H 1.09004 * 109.59010 * 294.70550 * 12 11 10 41 41 H 0.97003 * 119.99547 * 179.97438 * 17 16 14 42 42 H 1.08994 * 109.56060 * 293.78487 * 22 13 12 43 43 H 1.08998 * 109.61203 * 173.35711 * 22 13 12 44 44 H 1.08002 * 120.18190 * 359.97438 * 24 23 4 45 45 H 1.07996 * 119.58517 * 179.97438 * 25 24 23 46 46 H 1.07996 * 119.47536 * 179.97438 * 26 25 24 47 47 H 1.07997 * 120.12747 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1838 1.2178 0.0000 4 6 3.5722 1.2303 0.0005 5 6 4.3251 2.5034 0.0000 6 8 5.5361 2.4934 0.1026 7 7 3.6681 3.6747 -0.1143 8 6 4.4137 4.9357 -0.1154 9 1 5.3691 4.7930 -0.6202 10 6 3.6038 6.0074 -0.8487 11 6 4.3962 7.3164 -0.8789 12 6 4.6417 7.7933 0.5560 13 7 5.2915 6.7118 1.3091 14 6 6.4639 6.9358 1.9803 15 1 7.1618 6.1259 2.1333 16 6 6.7554 8.2038 2.4642 17 7 5.7995 9.1019 2.5742 18 14 8.5041 8.6355 2.9591 19 1 9.4022 8.4839 1.7862 20 1 8.5503 10.0401 3.4390 21 1 8.9501 7.7259 4.0449 22 6 4.6602 5.3852 1.3282 23 6 4.2445 -0.0185 0.0005 24 6 5.6434 -0.0935 0.0005 25 6 6.2530 -1.3120 -0.0001 26 6 5.5023 -2.4861 -0.0012 27 6 4.1422 -2.4495 -0.0013 28 6 3.4772 -1.2094 -0.0058 29 7 2.1432 -1.1448 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6318 2.1461 0.0004 34 1 2.7015 3.6827 -0.1965 35 1 3.4064 5.6787 -1.8690 36 1 2.6587 6.1669 -0.3295 37 1 5.3521 7.1516 -1.3761 38 1 3.8291 8.0724 -1.4220 39 1 5.2890 8.6702 0.5439 40 1 3.6909 8.0474 1.0244 41 1 6.0031 9.9879 2.9127 42 1 3.7109 5.4405 1.8608 43 1 5.3194 4.6734 1.8250 44 1 6.2355 0.8097 0.0001 45 1 7.3314 -1.3687 -0.0005 46 1 6.0082 -3.4403 -0.0021 47 1 3.5752 -3.3686 -0.0027 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009422514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:29:58 Heat of formation + Delta-G solvation = 41.500351 kcal Electronic energy + Delta-G solvation = -28953.850624 eV Core-core repulsion = 25101.882443 eV Total energy + Delta-G solvation = -3851.968181 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.30505 -39.51906 -37.57485 -37.40664 -34.51000 -33.63414 -32.47308 -32.23321 -30.51724 -30.32357 -28.66293 -27.93950 -25.32286 -24.84593 -23.42593 -22.64313 -22.19765 -21.68233 -20.43289 -19.38977 -18.19951 -17.53252 -17.44049 -16.78189 -15.72053 -15.48819 -15.28569 -14.95704 -14.86947 -14.61491 -14.50167 -14.01702 -13.77812 -13.50314 -13.38354 -13.30260 -13.23138 -13.11222 -12.56757 -12.44475 -12.42408 -11.89658 -11.73684 -11.56722 -11.54065 -11.13835 -10.95664 -10.81223 -10.62837 -10.37766 -10.30853 -10.27796 -9.94617 -9.82540 -9.70501 -9.31198 -8.96548 -8.89734 -8.46017 -8.36930 -6.69857 -5.80575 -3.23749 -0.06895 0.58171 1.58672 2.59296 3.05425 3.09253 3.39999 3.44571 3.47436 3.88311 3.94484 4.25693 4.40783 4.50020 4.55899 4.65805 4.88415 4.98771 5.10329 5.16157 5.21999 5.27465 5.29314 5.34002 5.46560 5.50254 5.54363 5.57185 5.63537 5.68120 5.87345 5.93618 6.00805 6.08022 6.15938 6.17411 6.34507 6.37118 6.48519 6.56113 6.58668 6.63042 6.73000 6.78270 6.91291 7.31905 7.53287 7.61777 7.66106 7.80840 8.20898 8.44004 9.19904 9.81661 10.37307 11.28184 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014880 B = 0.002804 C = 0.002486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.285187 B = 9983.772265 C =11259.290828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.153 3.847 3 C -0.139 4.139 4 C -0.060 4.060 5 C 0.556 3.444 6 O -0.519 6.519 7 N -0.709 5.709 8 C 0.124 3.876 9 H 0.089 0.911 10 C -0.115 4.115 11 C -0.139 4.139 12 C 0.167 3.833 13 N -0.586 5.586 14 C -0.253 4.253 15 H 0.066 0.934 16 C 0.004 3.996 17 N -0.904 5.904 18 Si 0.904 3.096 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.282 1.282 22 C 0.142 3.858 23 C -0.072 4.072 24 C -0.095 4.095 25 C -0.124 4.124 26 C -0.095 4.095 27 C -0.104 4.104 28 C 0.130 3.870 29 N -0.464 5.464 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.142 0.858 34 H 0.395 0.605 35 H 0.051 0.949 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.089 0.911 40 H 0.019 0.981 41 H 0.254 0.746 42 H 0.018 0.982 43 H 0.058 0.942 44 H 0.171 0.829 45 H 0.129 0.871 46 H 0.129 0.871 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.868 -18.531 -8.433 22.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.000 4.000 3 C -0.160 4.160 4 C -0.071 4.071 5 C 0.342 3.658 6 O -0.397 6.397 7 N -0.359 5.359 8 C 0.020 3.980 9 H 0.108 0.892 10 C -0.153 4.153 11 C -0.179 4.179 12 C 0.041 3.959 13 N -0.309 5.309 14 C -0.383 4.383 15 H 0.084 0.916 16 C -0.195 4.195 17 N -0.548 5.548 18 Si 0.734 3.266 19 H -0.209 1.209 20 H -0.216 1.216 21 H -0.208 1.208 22 C 0.014 3.986 23 C -0.075 4.075 24 C -0.113 4.113 25 C -0.142 4.142 26 C -0.115 4.115 27 C -0.123 4.123 28 C 0.008 3.992 29 N -0.174 5.174 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.160 0.840 34 H 0.230 0.770 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.108 0.892 40 H 0.038 0.962 41 H 0.064 0.936 42 H 0.036 0.964 43 H 0.077 0.923 44 H 0.188 0.812 45 H 0.147 0.853 46 H 0.147 0.853 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.343 -19.148 -8.266 22.853 hybrid contribution 0.744 1.017 0.271 1.289 sum -8.600 -18.130 -7.995 21.601 Atomic orbital electron populations 1.20798 0.88121 1.03967 1.03460 1.21393 0.97264 0.87654 0.93687 1.22245 0.93555 0.99805 1.00422 1.20483 0.93676 0.93651 0.99252 1.18006 0.87245 0.83220 0.77348 1.90623 1.13459 1.86364 1.49221 1.46090 1.10628 1.06125 1.73100 1.21872 0.95396 0.80431 1.00349 0.89244 1.21686 0.98884 0.95986 0.98763 1.22182 0.99101 0.95042 1.01589 1.20845 0.96782 0.92362 0.85882 1.43977 1.25301 1.04965 1.56675 1.19179 0.93977 0.95617 1.29499 0.91594 1.25044 0.97688 0.98011 0.98737 1.70022 1.30410 1.05457 1.48953 0.86340 0.84614 0.77178 0.78495 1.20928 1.21616 1.20811 1.21179 0.96461 0.89139 0.91773 1.18684 0.95216 0.92029 1.01584 1.22135 0.93453 1.00652 0.95033 1.21114 1.00628 0.92235 1.00193 1.20995 0.93734 0.98874 0.97885 1.20730 0.94208 0.95962 1.01381 1.18830 0.88728 0.92981 0.98619 1.67617 1.08860 1.28819 1.12081 0.89979 0.90130 0.90213 0.84013 0.77020 0.92994 0.92139 0.92366 0.92610 0.89239 0.96243 0.93565 0.96418 0.92301 0.81208 0.85330 0.85324 0.84751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.14 36.01 0.37 -0.34 16 2 C 0.15 1.60 6.78 -82.56 -0.56 1.04 16 3 C -0.14 -1.46 9.21 -38.95 -0.36 -1.82 16 4 C -0.06 -0.80 5.94 -104.34 -0.62 -1.42 16 5 C 0.56 8.53 7.72 -12.30 -0.09 8.43 16 6 O -0.52 -9.65 13.19 5.33 0.07 -9.58 16 7 N -0.71 -9.80 5.04 -54.62 -0.28 -10.08 16 8 C 0.12 2.14 2.60 -67.81 -0.18 1.96 16 9 H 0.09 1.76 7.58 -51.93 -0.39 1.36 16 10 C -0.11 -1.76 5.35 -26.69 -0.14 -1.90 16 11 C -0.14 -2.51 6.08 -26.61 -0.16 -2.67 16 12 C 0.17 3.86 5.30 -3.71 -0.02 3.84 16 13 N -0.59 -14.65 2.99 -172.31 -0.52 -15.17 16 14 C -0.25 -7.05 9.58 -15.06 -0.14 -7.19 16 15 H 0.07 1.85 7.88 -52.49 -0.41 1.43 16 16 C 0.00 0.10 4.93 -17.43 -0.09 0.02 16 17 N -0.90 -26.04 11.18 55.49 0.62 -25.42 16 18 Si 0.90 21.90 29.58 -169.99 -5.03 16.87 16 19 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 C 0.14 3.02 6.09 -3.71 -0.02 3.00 16 23 C -0.07 -1.02 5.76 -106.52 -0.61 -1.63 16 24 C -0.09 -1.30 9.25 -39.60 -0.37 -1.67 16 25 C -0.12 -1.36 9.96 -39.88 -0.40 -1.76 16 26 C -0.10 -0.92 9.94 -39.95 -0.40 -1.31 16 27 C -0.10 -1.13 9.98 -39.43 -0.39 -1.53 16 28 C 0.13 1.70 6.61 -84.87 -0.56 1.14 16 29 N -0.46 -5.79 10.19 -7.25 -0.07 -5.87 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.39 8.07 -51.93 -0.42 -0.03 16 33 H 0.14 1.03 6.55 -52.49 -0.34 0.69 16 34 H 0.40 4.11 6.77 -40.82 -0.28 3.84 16 35 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.09 2.33 6.06 -51.93 -0.31 2.01 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.25 7.09 8.31 -40.82 -0.34 6.76 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.06 1.35 7.93 -51.93 -0.41 0.94 16 44 H 0.17 2.62 4.98 -52.49 -0.26 2.36 16 45 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 378.17 15.07 5.70 5.70 Total: -1.00 -32.66 378.17 -10.87 -43.53 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -6.62 Total: 3.82 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: -4.75 Total: -3.80 kcal Atomic # 7 Polarization: -56.29 SS G_CDS: -0.24 Total: -56.54 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.07 Total: -9.58 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.66 -10.87 -43.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009422514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.032 kcal (2) G-P(sol) polarization free energy of solvation -32.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds