Wall clock time and date at job start Tue Mar 31 2020 22:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36616 * 120.91869 * 2 1 4 4 C 1.39279 * 119.90022 * 180.02562 * 3 2 1 5 5 N 1.31144 * 121.77451 * 359.97223 * 4 3 2 6 6 C 1.33620 * 121.39501 * 0.02562 * 5 4 3 7 7 C 1.40766 * 120.84610 * 179.97438 * 6 5 4 8 8 C 1.35699 * 120.11119 * 180.02562 * 7 6 5 9 9 C 1.40642 * 120.92925 * 0.02562 * 8 7 6 10 10 C 1.47765 * 119.80102 * 179.97438 * 9 8 7 11 11 O 1.21563 * 119.99597 * 179.97438 * 10 9 8 12 12 N 1.34773 * 120.00203 * 0.02562 * 10 9 8 13 13 C 1.46506 * 119.99829 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46794 * 185.82448 * 13 12 10 15 15 H 1.08997 * 109.99953 * 300.25962 * 14 13 12 16 16 C 1.54327 * 109.87951 * 179.16410 * 14 13 12 17 17 C 1.55155 * 102.94211 * 218.39121 * 16 14 13 18 18 C 1.54901 * 101.58280 * 35.50298 * 17 16 14 19 19 N 1.47024 * 109.88184 * 61.36159 * 14 13 12 20 20 C 1.36934 * 125.64659 * 298.39079 * 19 14 13 21 21 H 1.07997 * 119.99861 * 328.75353 * 20 19 14 22 22 C 1.38810 * 120.00309 * 148.76099 * 20 19 14 23 23 N 1.31609 * 120.00352 * 159.53965 * 22 20 19 24 24 Si 1.86806 * 119.99477 * 339.53681 * 22 20 19 25 25 H 1.48500 * 109.46956 * 84.59419 * 24 22 20 26 26 H 1.48504 * 109.46970 * 204.58785 * 24 22 20 27 27 H 1.48493 * 109.47547 * 324.59244 * 24 22 20 28 28 C 1.38540 * 120.39301 * 0.23210 * 9 8 7 29 29 C 1.40195 * 119.40107 * 359.49319 * 28 9 8 30 30 H 1.09000 * 109.47151 * 89.99715 * 1 2 3 31 31 H 1.08995 * 109.47317 * 209.99864 * 1 2 3 32 32 H 1.09004 * 109.47206 * 330.00252 * 1 2 3 33 33 H 1.07996 * 120.05178 * 0.02562 * 3 2 1 34 34 H 1.07997 * 119.11186 * 180.02562 * 4 3 2 35 35 H 1.08004 * 119.94744 * 0.05184 * 7 6 5 36 36 H 1.08003 * 119.53657 * 180.02562 * 8 7 6 37 37 H 0.96999 * 120.00011 * 359.97438 * 12 10 9 38 38 H 1.08995 * 109.47131 * 65.82582 * 13 12 10 39 39 H 1.08999 * 109.47106 * 305.82314 * 13 12 10 40 40 H 1.09000 * 110.71762 * 100.02667 * 16 14 13 41 41 H 1.08999 * 110.72265 * 336.75781 * 16 14 13 42 42 H 1.09008 * 111.00299 * 153.58056 * 17 16 14 43 43 H 1.08997 * 111.00192 * 277.42923 * 17 16 14 44 44 H 1.09007 * 110.36704 * 81.82951 * 18 17 16 45 45 H 1.08995 * 110.37069 * 204.03752 * 18 17 16 46 46 H 0.97001 * 120.00245 * 179.97438 * 23 22 20 47 47 H 1.08002 * 120.30077 * 179.72516 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1720 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2721 0.0203 -0.0005 6 6 3.6479 -1.1612 -0.0005 7 6 4.3794 -2.3639 -0.0010 8 6 3.7301 -3.5555 -0.0015 9 6 2.3249 -3.6130 -0.0020 10 6 1.6436 -4.9243 -0.0031 11 8 0.4291 -4.9781 -0.0031 12 7 2.3686 -6.0604 -0.0031 13 6 1.6930 -7.3604 -0.0036 14 6 2.7312 -8.4746 0.1430 15 1 3.4404 -8.4345 -0.6837 16 6 2.0276 -9.8480 0.1646 17 6 2.8448 -10.6406 1.2188 18 6 3.1959 -9.5297 2.2396 19 7 3.4438 -8.3292 1.4207 20 6 4.2103 -7.2560 1.7893 21 1 4.7473 -6.6932 1.0402 22 6 4.2971 -6.8914 3.1259 23 7 5.3046 -6.1543 3.5429 24 14 2.9839 -7.4471 4.3327 25 1 3.3070 -8.8114 4.8222 26 1 2.9378 -6.5072 5.4815 27 1 1.6633 -7.4645 3.6540 28 6 1.5756 -2.4477 -0.0069 29 6 2.2308 -1.2083 -0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6849 2.1163 0.0004 34 1 4.1436 2.0813 -0.0001 35 1 5.4591 -2.3383 -0.0006 36 1 4.3005 -4.4726 -0.0014 37 1 3.3376 -6.0174 -0.0027 38 1 1.1524 -7.4885 -0.9413 39 1 0.9914 -7.4056 0.8294 40 1 2.0892 -10.3283 -0.8119 41 1 0.9893 -9.7445 0.4798 42 1 2.2364 -11.4180 1.6811 43 1 3.7466 -11.0638 0.7764 44 1 2.3597 -9.3600 2.9181 45 1 4.0903 -9.7993 2.8012 46 1 5.3651 -5.8993 4.4768 47 1 0.4966 -2.4937 -0.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027906552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:01 Heat of formation + Delta-G solvation = 39.678268 kcal Electronic energy + Delta-G solvation = -29396.919325 eV Core-core repulsion = 25544.872132 eV Total energy + Delta-G solvation = -3852.047193 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -40.93079 -39.34492 -37.96671 -36.50479 -34.75195 -33.99827 -32.72505 -30.93522 -30.25992 -30.04717 -29.24231 -27.93367 -25.40274 -24.41322 -23.58360 -23.26857 -21.25191 -20.94473 -20.27733 -19.66421 -18.05616 -17.73549 -16.89344 -16.55347 -15.95109 -15.50795 -15.24081 -15.13609 -14.77078 -14.35491 -14.22595 -13.99440 -13.59319 -13.50943 -13.42841 -13.19805 -13.02043 -12.86295 -12.73910 -12.53187 -12.50002 -11.78099 -11.68811 -11.54143 -11.31778 -11.29509 -11.17429 -10.91973 -10.72966 -10.54893 -10.19812 -10.18216 -10.06775 -9.62518 -9.51487 -9.45744 -8.78838 -8.69904 -8.39138 -8.10019 -7.03307 -6.09996 -3.48447 0.29058 0.74751 1.95585 2.61704 3.29944 3.44206 3.49828 3.57744 3.73560 4.21644 4.28883 4.46001 4.46604 4.55083 4.75256 4.85920 4.98218 5.10573 5.13501 5.21158 5.23127 5.28224 5.29727 5.36142 5.38526 5.45371 5.52851 5.63926 5.78603 5.85113 5.88949 5.97486 6.02909 6.07058 6.08984 6.12855 6.22795 6.27561 6.35355 6.42485 6.46333 6.54060 6.64057 6.74562 6.80775 6.84474 7.05317 7.70064 7.90664 8.11013 8.18015 8.66226 8.74048 9.55446 10.11543 11.04684 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.003386 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.050332 B = 8268.373547 C = 9005.813102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.014 4.014 3 C -0.191 4.191 4 C 0.136 3.864 5 N -0.480 5.480 6 C 0.146 3.854 7 C -0.097 4.097 8 C -0.060 4.060 9 C -0.119 4.119 10 C 0.552 3.448 11 O -0.560 6.560 12 N -0.691 5.691 13 C 0.115 3.885 14 C 0.142 3.858 15 H 0.050 0.950 16 C -0.123 4.123 17 C -0.131 4.131 18 C 0.117 3.883 19 N -0.600 5.600 20 C -0.251 4.251 21 H 0.083 0.917 22 C 0.041 3.959 23 N -0.896 5.896 24 Si 0.880 3.120 25 H -0.284 1.284 26 H -0.302 1.302 27 H -0.274 1.274 28 C -0.039 4.039 29 C -0.113 4.113 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.075 0.925 33 H 0.135 0.865 34 H 0.158 0.842 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.411 0.589 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.020 0.980 45 H 0.056 0.944 46 H 0.265 0.735 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.369 7.682 -9.244 13.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.022 4.022 3 C -0.211 4.211 4 C -0.036 4.036 5 N -0.188 5.188 6 C 0.024 3.976 7 C -0.116 4.116 8 C -0.080 4.080 9 C -0.122 4.122 10 C 0.339 3.661 11 O -0.441 6.441 12 N -0.343 5.343 13 C -0.011 4.011 14 C 0.035 3.965 15 H 0.067 0.933 16 C -0.162 4.162 17 C -0.170 4.170 18 C -0.008 4.008 19 N -0.326 5.326 20 C -0.378 4.378 21 H 0.100 0.900 22 C -0.160 4.160 23 N -0.537 5.537 24 Si 0.710 3.290 25 H -0.211 1.211 26 H -0.230 1.230 27 H -0.199 1.199 28 C -0.059 4.059 29 C -0.115 4.115 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.153 0.847 34 H 0.175 0.825 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.251 0.749 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.038 0.962 45 H 0.074 0.926 46 H 0.075 0.925 47 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -6.105 7.653 -9.074 13.349 hybrid contribution -1.115 -0.112 1.086 1.560 sum -7.219 7.542 -7.988 13.145 Atomic orbital electron populations 1.20923 0.89974 1.03848 1.03259 1.20213 0.96645 0.92080 0.93260 1.21697 0.95634 0.98570 1.05212 1.22933 0.91469 0.96446 0.92744 1.68054 1.39943 0.97729 1.13090 1.18998 0.89549 0.92498 0.96515 1.20692 1.00734 0.89612 1.00564 1.21136 0.93099 0.98968 0.94817 1.20073 0.93899 0.93877 1.04372 1.18138 0.86824 0.84181 0.76960 1.90698 1.13583 1.87805 1.52015 1.45974 1.11448 1.05004 1.71860 1.21951 0.96022 0.82837 1.00313 1.21391 0.91891 0.92005 0.91248 0.93261 1.22516 0.99211 0.95272 0.99191 1.22721 0.99583 0.97351 0.97341 1.21887 0.98544 0.86724 0.93631 1.44811 1.55819 1.16986 1.14990 1.18271 1.20312 1.06232 0.93000 0.90006 1.25245 0.96958 0.96563 0.97281 1.69798 1.28468 1.39227 1.16209 0.86912 0.84159 0.77230 0.80744 1.21077 1.22989 1.19942 1.21392 1.00502 0.89747 0.94244 1.18647 0.94111 0.93886 1.04856 0.90049 0.90352 0.90645 0.84693 0.82523 0.84045 0.84129 0.74885 0.92800 0.91819 0.91325 0.91416 0.91779 0.91247 0.96211 0.92563 0.92491 0.83906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 9.59 36.00 0.35 -0.77 16 2 C -0.01 -0.17 5.92 -104.22 -0.62 -0.78 16 3 C -0.19 -1.97 9.72 -39.78 -0.39 -2.35 16 4 C 0.14 1.56 11.14 -17.46 -0.19 1.37 16 5 N -0.48 -7.17 10.33 -10.92 -0.11 -7.28 16 6 C 0.15 2.33 6.61 -84.77 -0.56 1.77 16 7 C -0.10 -1.57 9.95 -39.54 -0.39 -1.96 16 8 C -0.06 -1.01 9.44 -39.58 -0.37 -1.38 16 9 C -0.12 -2.10 5.87 -104.98 -0.62 -2.72 16 10 C 0.55 10.88 7.77 -12.37 -0.10 10.78 16 11 O -0.56 -12.19 16.29 5.31 0.09 -12.10 16 12 N -0.69 -13.22 4.76 -61.27 -0.29 -13.51 16 13 C 0.11 2.11 5.18 -4.04 -0.02 2.09 16 14 C 0.14 2.53 3.35 -66.95 -0.22 2.31 16 15 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 16 C -0.12 -1.82 6.48 -24.90 -0.16 -1.98 16 17 C -0.13 -2.04 7.08 -24.59 -0.17 -2.21 16 18 C 0.12 2.39 4.87 -2.53 -0.01 2.38 16 19 N -0.60 -13.13 2.75 -162.58 -0.45 -13.58 16 20 C -0.25 -6.31 8.54 -15.06 -0.13 -6.44 16 21 H 0.08 2.10 6.93 -52.49 -0.36 1.74 16 22 C 0.04 1.12 5.44 -17.44 -0.09 1.03 16 23 N -0.90 -25.83 13.97 55.49 0.78 -25.05 16 24 Si 0.88 22.35 24.60 -169.99 -4.18 18.17 16 25 H -0.28 -6.97 6.96 56.52 0.39 -6.58 16 26 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 27 H -0.27 -7.10 7.03 56.52 0.40 -6.70 16 28 C -0.04 -0.62 8.88 -38.74 -0.34 -0.97 16 29 C -0.11 -1.69 5.74 -106.82 -0.61 -2.31 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.76 6.53 -51.93 -0.34 0.42 16 32 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 33 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.16 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.14 2.09 8.06 -52.48 -0.42 1.67 16 36 H 0.14 2.33 6.35 -52.48 -0.33 2.00 16 37 H 0.41 7.79 4.03 -40.82 -0.16 7.62 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.33 8.12 -51.93 -0.42 0.91 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 0.97 7.85 -51.93 -0.41 0.56 16 42 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 43 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.44 5.51 -51.93 -0.29 0.15 16 45 H 0.06 1.22 7.93 -51.93 -0.41 0.80 16 46 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.14 2.13 6.01 -52.49 -0.32 1.82 16 LS Contribution 374.06 15.07 5.64 5.64 Total: -1.00 -32.26 374.06 -9.62 -41.88 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.42 Total: 7.99 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: -4.67 Total: -2.15 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.08 Total: -59.42 kcal Atomic # 8 Polarization: -12.19 SS G_CDS: 0.09 Total: -12.10 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.18 Total: 18.17 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.26 -9.62 -41.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027906552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.558 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds