Wall clock time and date at job start Tue Mar 31 2020 22:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36616 * 120.91869 * 2 1 4 4 C 1.39279 * 119.90022 * 180.02562 * 3 2 1 5 5 N 1.31144 * 121.77451 * 359.97223 * 4 3 2 6 6 C 1.33620 * 121.39501 * 0.02562 * 5 4 3 7 7 C 1.40766 * 120.84610 * 179.97438 * 6 5 4 8 8 C 1.35699 * 120.11119 * 180.02562 * 7 6 5 9 9 C 1.40642 * 120.92925 * 0.02562 * 8 7 6 10 10 C 1.47765 * 119.80102 * 179.97438 * 9 8 7 11 11 O 1.21563 * 119.99597 * 179.97438 * 10 9 8 12 12 N 1.34773 * 120.00203 * 0.02562 * 10 9 8 13 13 C 1.46506 * 119.99829 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46794 * 185.82448 * 13 12 10 15 15 H 1.08997 * 109.99953 * 300.25962 * 14 13 12 16 16 C 1.54327 * 109.87951 * 179.16410 * 14 13 12 17 17 C 1.55155 * 102.94211 * 218.39121 * 16 14 13 18 18 C 1.54901 * 101.58280 * 35.50298 * 17 16 14 19 19 N 1.47024 * 109.88184 * 61.36159 * 14 13 12 20 20 C 1.36934 * 125.64659 * 298.39079 * 19 14 13 21 21 H 1.07997 * 119.99861 * 328.75353 * 20 19 14 22 22 C 1.38810 * 120.00309 * 148.76099 * 20 19 14 23 23 N 1.31609 * 120.00352 * 159.53965 * 22 20 19 24 24 Si 1.86806 * 119.99477 * 339.53681 * 22 20 19 25 25 H 1.48500 * 109.46956 * 84.59419 * 24 22 20 26 26 H 1.48504 * 109.46970 * 204.58785 * 24 22 20 27 27 H 1.48493 * 109.47547 * 324.59244 * 24 22 20 28 28 C 1.38540 * 120.39301 * 0.23210 * 9 8 7 29 29 C 1.40195 * 119.40107 * 359.49319 * 28 9 8 30 30 H 1.09000 * 109.47151 * 89.99715 * 1 2 3 31 31 H 1.08995 * 109.47317 * 209.99864 * 1 2 3 32 32 H 1.09004 * 109.47206 * 330.00252 * 1 2 3 33 33 H 1.07996 * 120.05178 * 0.02562 * 3 2 1 34 34 H 1.07997 * 119.11186 * 180.02562 * 4 3 2 35 35 H 1.08004 * 119.94744 * 0.05184 * 7 6 5 36 36 H 1.08003 * 119.53657 * 180.02562 * 8 7 6 37 37 H 0.96999 * 120.00011 * 359.97438 * 12 10 9 38 38 H 1.08995 * 109.47131 * 65.82582 * 13 12 10 39 39 H 1.08999 * 109.47106 * 305.82314 * 13 12 10 40 40 H 1.09000 * 110.71762 * 100.02667 * 16 14 13 41 41 H 1.08999 * 110.72265 * 336.75781 * 16 14 13 42 42 H 1.09008 * 111.00299 * 153.58056 * 17 16 14 43 43 H 1.08997 * 111.00192 * 277.42923 * 17 16 14 44 44 H 1.09007 * 110.36704 * 81.82951 * 18 17 16 45 45 H 1.08995 * 110.37069 * 204.03752 * 18 17 16 46 46 H 0.97001 * 120.00245 * 179.97438 * 23 22 20 47 47 H 1.08002 * 120.30077 * 179.72516 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1720 0.0000 4 6 3.6015 1.1473 -0.0005 5 7 4.2721 0.0203 -0.0005 6 6 3.6479 -1.1612 -0.0005 7 6 4.3794 -2.3639 -0.0010 8 6 3.7301 -3.5555 -0.0015 9 6 2.3249 -3.6130 -0.0020 10 6 1.6436 -4.9243 -0.0031 11 8 0.4291 -4.9781 -0.0031 12 7 2.3686 -6.0604 -0.0031 13 6 1.6930 -7.3604 -0.0036 14 6 2.7312 -8.4746 0.1430 15 1 3.4404 -8.4345 -0.6837 16 6 2.0276 -9.8480 0.1646 17 6 2.8448 -10.6406 1.2188 18 6 3.1959 -9.5297 2.2396 19 7 3.4438 -8.3292 1.4207 20 6 4.2103 -7.2560 1.7893 21 1 4.7473 -6.6932 1.0402 22 6 4.2971 -6.8914 3.1259 23 7 5.3046 -6.1543 3.5429 24 14 2.9839 -7.4471 4.3327 25 1 3.3070 -8.8114 4.8222 26 1 2.9378 -6.5072 5.4815 27 1 1.6633 -7.4645 3.6540 28 6 1.5756 -2.4477 -0.0069 29 6 2.2308 -1.2083 -0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6849 2.1163 0.0004 34 1 4.1436 2.0813 -0.0001 35 1 5.4591 -2.3383 -0.0006 36 1 4.3005 -4.4726 -0.0014 37 1 3.3376 -6.0174 -0.0027 38 1 1.1524 -7.4885 -0.9413 39 1 0.9914 -7.4056 0.8294 40 1 2.0892 -10.3283 -0.8119 41 1 0.9893 -9.7445 0.4798 42 1 2.2364 -11.4180 1.6811 43 1 3.7466 -11.0638 0.7764 44 1 2.3597 -9.3600 2.9181 45 1 4.0903 -9.7993 2.8012 46 1 5.3651 -5.8993 4.4768 47 1 0.4966 -2.4937 -0.0118 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027906552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:59 Heat of formation + Delta-G solvation = 19.320971 kcal Electronic energy + Delta-G solvation = -29397.802084 eV Core-core repulsion = 25544.872132 eV Total energy + Delta-G solvation = -3852.929951 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -42.04900 -40.79930 -39.47177 -37.73350 -35.79864 -35.47084 -34.65580 -32.14641 -31.79474 -31.42311 -30.61881 -28.82026 -26.83421 -26.03704 -24.87315 -24.54602 -22.66571 -22.05035 -21.69725 -21.18170 -19.51256 -18.97037 -18.56168 -17.70775 -17.30448 -17.10928 -16.71381 -16.66265 -16.09466 -15.54769 -15.38403 -15.29489 -15.10097 -15.02190 -14.81273 -14.54097 -14.31653 -14.09950 -13.96494 -13.78217 -13.45392 -13.42828 -13.04692 -12.82885 -12.76742 -12.70815 -12.60718 -12.40107 -12.37565 -12.06915 -11.81827 -11.68584 -11.35488 -11.20684 -11.03360 -10.73828 -10.51292 -10.07328 -9.79232 -9.27725 -8.90033 -8.21161 -5.51785 -0.82921 -0.36581 0.83260 1.22930 1.33651 1.38921 1.40535 2.18534 2.34652 2.39131 3.04219 3.08797 3.26435 3.30600 3.45796 3.61126 3.69081 3.80010 3.87303 3.96667 4.00414 4.03096 4.15503 4.25777 4.33541 4.44520 4.46117 4.50454 4.64890 4.71390 4.73231 4.74732 4.80762 4.85760 4.90570 5.01913 5.02874 5.05802 5.13098 5.15831 5.19966 5.28640 5.31219 5.47235 5.49238 5.55113 5.75488 5.79182 6.10894 6.57497 6.78291 6.89205 7.18145 7.54205 8.17788 8.97436 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.015009 B = 0.003386 C = 0.003108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.050332 B = 8268.373547 C = 9005.813102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.021 4.021 3 C -0.177 4.177 4 C 0.143 3.857 5 N -0.514 5.514 6 C 0.131 3.869 7 C -0.107 4.107 8 C -0.069 4.069 9 C -0.148 4.148 10 C 0.550 3.450 11 O -0.587 6.587 12 N -0.695 5.695 13 C 0.116 3.884 14 C 0.138 3.862 15 H 0.063 0.937 16 C -0.114 4.114 17 C -0.117 4.117 18 C 0.105 3.895 19 N -0.617 5.617 20 C -0.217 4.217 21 H 0.072 0.928 22 C -0.009 4.009 23 N -0.938 5.938 24 Si 0.920 3.080 25 H -0.273 1.273 26 H -0.317 1.317 27 H -0.285 1.285 28 C -0.030 4.030 29 C -0.131 4.131 30 H 0.096 0.904 31 H 0.065 0.935 32 H 0.103 0.897 33 H 0.181 0.819 34 H 0.197 0.803 35 H 0.145 0.855 36 H 0.132 0.868 37 H 0.410 0.590 38 H 0.079 0.921 39 H 0.036 0.964 40 H 0.107 0.893 41 H 0.073 0.927 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.005 0.995 45 H 0.038 0.962 46 H 0.259 0.741 47 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.933 8.563 -10.861 15.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.029 4.029 3 C -0.196 4.196 4 C -0.028 4.028 5 N -0.223 5.223 6 C 0.010 3.990 7 C -0.126 4.126 8 C -0.089 4.089 9 C -0.151 4.151 10 C 0.338 3.662 11 O -0.471 6.471 12 N -0.346 5.346 13 C -0.009 4.009 14 C 0.032 3.968 15 H 0.080 0.920 16 C -0.152 4.152 17 C -0.155 4.155 18 C -0.019 4.019 19 N -0.343 5.343 20 C -0.346 4.346 21 H 0.090 0.910 22 C -0.206 4.206 23 N -0.583 5.583 24 Si 0.752 3.248 25 H -0.199 1.199 26 H -0.246 1.246 27 H -0.211 1.211 28 C -0.050 4.050 29 C -0.133 4.133 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.198 0.802 34 H 0.214 0.786 35 H 0.163 0.837 36 H 0.150 0.850 37 H 0.250 0.750 38 H 0.097 0.903 39 H 0.054 0.946 40 H 0.125 0.875 41 H 0.091 0.909 42 H 0.110 0.890 43 H 0.100 0.900 44 H 0.023 0.977 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.688 8.484 -10.715 15.681 hybrid contribution -0.655 -0.194 1.475 1.625 sum -8.343 8.290 -9.240 14.956 Atomic orbital electron populations 1.21008 0.87803 1.04625 1.04414 1.20623 0.98268 0.91383 0.92597 1.22191 0.95203 0.99744 1.02480 1.23755 0.92643 0.96703 0.89730 1.68098 1.40847 0.98221 1.15124 1.19128 0.90150 0.92942 0.96782 1.20795 1.01047 0.89905 1.00823 1.21012 0.92888 0.99007 0.95983 1.19984 0.94247 0.93478 1.07430 1.18462 0.86597 0.84971 0.76193 1.90658 1.14543 1.88291 1.53562 1.46047 1.11408 1.05436 1.71666 1.21976 0.95816 0.82741 1.00412 1.21632 0.91984 0.93884 0.89312 0.91955 1.22560 0.98811 0.92813 1.01031 1.22678 1.00758 0.96185 0.95894 1.21995 0.97183 0.88012 0.94751 1.45028 1.56042 1.16738 1.16491 1.18337 1.18451 1.05606 0.92208 0.91048 1.25635 0.98316 0.97924 0.98702 1.69883 1.30267 1.42203 1.15959 0.86244 0.82348 0.77045 0.79209 1.19873 1.24610 1.21120 1.21542 1.00731 0.89823 0.92858 1.18864 0.94079 0.94773 1.05560 0.88573 0.91579 0.87870 0.80168 0.78615 0.83693 0.84992 0.75016 0.90275 0.94576 0.87466 0.90876 0.88983 0.89972 0.97693 0.94400 0.93192 0.83264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.86 9.59 71.23 0.68 -1.18 16 2 C -0.02 -0.45 5.92 -19.61 -0.12 -0.56 16 3 C -0.18 -2.93 9.72 22.14 0.22 -2.71 16 4 C 0.14 2.83 11.14 85.05 0.95 3.77 16 5 N -0.51 -14.87 10.33 -188.45 -1.95 -16.81 16 6 C 0.13 4.24 6.61 40.37 0.27 4.51 16 7 C -0.11 -3.65 9.95 22.30 0.22 -3.43 16 8 C -0.07 -2.47 9.44 22.27 0.21 -2.26 16 9 C -0.15 -5.52 5.87 -20.10 -0.12 -5.64 16 10 C 0.55 22.55 7.77 86.76 0.67 23.22 16 11 O -0.59 -26.32 16.29 -3.91 -0.06 -26.38 16 12 N -0.69 -27.39 4.76 -466.04 -2.22 -29.61 16 13 C 0.12 4.23 5.18 86.38 0.45 4.68 16 14 C 0.14 4.71 3.35 45.34 0.15 4.86 16 15 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 16 C -0.11 -2.95 6.48 31.78 0.21 -2.74 16 17 C -0.12 -3.24 7.08 31.98 0.23 -3.01 16 18 C 0.11 4.21 4.87 86.85 0.42 4.63 16 19 N -0.62 -26.90 2.75 -668.27 -1.83 -28.74 16 20 C -0.22 -11.19 8.54 84.03 0.72 -10.48 16 21 H 0.07 3.81 6.93 -2.91 -0.02 3.79 16 22 C -0.01 -0.50 5.44 84.86 0.46 -0.04 16 23 N -0.94 -56.50 13.97 21.65 0.30 -56.20 16 24 Si 0.92 47.74 24.60 68.60 1.69 49.43 16 25 H -0.27 -13.39 6.96 99.48 0.69 -12.69 16 26 H -0.32 -17.05 7.11 99.48 0.71 -16.35 16 27 H -0.28 -15.06 7.03 99.48 0.70 -14.37 16 28 C -0.03 -0.98 8.88 22.82 0.20 -0.78 16 29 C -0.13 -3.89 5.74 -21.29 -0.12 -4.01 16 30 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.07 1.19 6.53 -2.39 -0.02 1.17 16 32 H 0.10 1.01 8.10 -2.38 -0.02 0.99 16 33 H 0.18 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.20 2.19 8.06 -2.91 -0.02 2.17 16 35 H 0.15 4.62 8.06 -2.91 -0.02 4.59 16 36 H 0.13 4.80 6.35 -2.91 -0.02 4.78 16 37 H 0.41 16.24 4.03 -92.71 -0.37 15.86 16 38 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.04 1.52 8.12 -2.39 -0.02 1.50 16 40 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.07 1.85 7.85 -2.39 -0.02 1.83 16 42 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.01 0.23 5.51 -2.38 -0.01 0.22 16 45 H 0.04 1.63 7.93 -2.39 -0.02 1.61 16 46 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 47 H 0.15 4.56 6.01 -2.91 -0.02 4.54 16 Total: -1.00 -74.35 374.06 2.23 -72.12 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.61 Total: 27.34 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 5.70 Total: 8.85 kcal Atomic # 7 Polarization: -125.66 SS G_CDS: -5.70 Total: -131.36 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.06 Total: -26.38 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 1.69 Total: 49.43 kcal Total: -74.35 2.23 -72.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027906552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.438 kcal (2) G-P(sol) polarization free energy of solvation -74.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds