Wall clock time and date at job start Tue Mar 31 2020 22:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30819 * 119.23006 * 2 1 4 4 C 1.33786 * 121.71796 * 179.97438 * 3 2 1 5 5 C 1.40539 * 120.82825 * 180.02562 * 4 3 2 6 6 C 1.36126 * 119.81475 * 179.97438 * 5 4 3 7 7 C 1.39337 * 121.09822 * 359.97438 * 6 5 4 8 8 C 1.36137 * 120.83583 * 0.02562 * 7 6 5 9 9 C 1.40556 * 119.62001 * 359.97438 * 8 7 6 10 10 C 1.40492 * 121.22431 * 180.30094 * 9 8 7 11 11 C 1.39036 * 117.96021 * 180.21043 * 10 9 8 12 12 C 1.47758 * 120.26833 * 179.74597 * 11 10 9 13 13 O 1.21570 * 120.00136 * 173.64565 * 12 11 10 14 14 N 1.34776 * 120.00155 * 353.64019 * 12 11 10 15 15 C 1.46501 * 120.00370 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47254 * 177.81474 * 15 14 12 17 17 H 1.09002 * 109.99890 * 56.00323 * 16 15 14 18 18 C 1.54329 * 109.88242 * 294.90800 * 16 15 14 19 19 C 1.55153 * 102.93914 * 218.39000 * 18 16 15 20 20 C 1.54913 * 101.58650 * 35.50044 * 19 18 16 21 21 N 1.47019 * 109.88217 * 177.09881 * 16 15 14 22 22 C 1.36945 * 125.64893 * 298.31152 * 21 16 15 23 23 H 1.08005 * 119.99591 * 345.28977 * 22 21 16 24 24 C 1.38810 * 119.99670 * 165.29232 * 22 21 16 25 25 N 1.31612 * 120.00651 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99518 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46980 * 60.00157 * 26 24 22 28 28 H 1.48501 * 109.46983 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47092 * 299.99713 * 26 24 22 30 30 H 1.08998 * 109.47098 * 263.10126 * 1 2 3 31 31 H 1.08997 * 109.46901 * 23.10005 * 1 2 3 32 32 H 1.09001 * 109.46843 * 143.09981 * 1 2 3 33 33 H 1.08005 * 120.08847 * 0.02562 * 5 4 3 34 34 H 1.08006 * 119.44787 * 180.02562 * 6 5 4 35 35 H 1.08001 * 119.58632 * 179.97438 * 7 6 5 36 36 H 1.08008 * 120.19243 * 180.02562 * 8 7 6 37 37 H 1.07995 * 121.01760 * 359.97438 * 10 9 8 38 38 H 0.96997 * 119.99769 * 0.02562 * 14 12 11 39 39 H 1.08998 * 109.46936 * 57.81044 * 15 14 12 40 40 H 1.09005 * 109.46720 * 297.81616 * 15 14 12 41 41 H 1.08999 * 110.71731 * 336.75030 * 18 16 15 42 42 H 1.08993 * 110.71759 * 100.02754 * 18 16 15 43 43 H 1.09006 * 111.00462 * 153.57641 * 19 18 16 44 44 H 1.08997 * 111.00451 * 277.42661 * 19 18 16 45 45 H 1.08996 * 110.36290 * 81.82565 * 20 19 18 46 46 H 1.08996 * 110.37071 * 204.04044 * 20 19 18 47 47 H 0.96997 * 120.00230 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1459 1.1416 0.0000 4 6 3.4825 1.1997 0.0005 5 6 4.1496 2.4366 0.0010 6 6 5.5104 2.4717 0.0021 7 6 6.2606 1.2975 0.0032 8 6 5.6512 0.0801 0.0027 9 6 4.2476 0.0058 0.0016 10 6 3.5838 -1.2324 0.0074 11 6 2.1935 -1.2267 0.0015 12 6 1.4435 -2.4998 0.0015 13 8 0.2329 -2.4921 0.1128 14 7 2.1014 -3.6695 -0.1220 15 6 1.3578 -4.9318 -0.1226 16 6 2.3289 -6.0957 -0.3297 17 1 3.1072 -6.0721 0.4331 18 6 2.9658 -6.0046 -1.7324 19 6 3.0338 -7.4886 -2.1802 20 6 1.7352 -8.0608 -1.5590 21 7 1.6016 -7.3717 -0.2626 22 6 0.9147 -7.8426 0.8245 23 1 1.0659 -7.3933 1.7949 24 6 0.0242 -8.8974 0.6791 25 7 -0.1604 -9.4447 -0.5035 26 14 -0.9123 -9.5403 2.1622 27 1 -1.7396 -8.4489 2.7363 28 1 -1.7928 -10.6606 1.7440 29 1 0.0506 -10.0221 3.1848 30 1 -0.3633 -0.1234 1.0202 31 1 -0.3633 0.9453 -0.4032 32 1 -0.3633 -0.8218 -0.6171 33 1 3.5842 3.3568 0.0015 34 1 6.0171 3.4255 0.0029 35 1 7.3391 1.3537 0.0036 36 1 6.2429 -0.8235 0.0040 37 1 4.1366 -2.1601 0.0124 38 1 3.0673 -3.6757 -0.2105 39 1 0.6253 -4.9216 -0.9297 40 1 0.8450 -5.0517 0.8318 41 1 2.3332 -5.4270 -2.4064 42 1 3.9650 -5.5730 -1.6749 43 1 3.0158 -7.5700 -3.2671 44 1 3.9142 -7.9812 -1.7676 45 1 0.8797 -7.8384 -2.1967 46 1 1.8275 -9.1367 -1.4109 47 1 -0.7824 -10.1820 -0.6050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027916719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:38 Heat of formation + Delta-G solvation = 43.580193 kcal Electronic energy + Delta-G solvation = -28602.585590 eV Core-core repulsion = 24750.707597 eV Total energy + Delta-G solvation = -3851.877992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.27677 -39.51246 -37.83414 -37.15634 -34.67039 -33.69596 -32.51849 -32.00355 -30.73093 -29.62717 -28.70678 -27.82009 -25.34929 -24.66535 -23.69645 -22.81333 -22.30241 -20.90748 -20.21100 -19.68273 -18.56368 -17.75155 -17.05751 -16.66068 -15.89384 -15.71009 -15.41796 -15.01127 -14.82963 -14.55963 -14.46306 -14.24976 -13.88429 -13.70376 -13.47464 -13.24045 -13.09970 -12.85699 -12.18688 -12.14883 -12.03723 -11.92518 -11.82385 -11.74992 -11.55549 -11.35996 -10.97485 -10.80721 -10.79396 -10.29336 -10.16118 -10.01486 -9.97279 -9.87695 -9.75820 -9.42595 -9.04220 -8.70718 -8.60593 -8.55985 -6.88313 -5.80280 -3.17419 -0.06758 0.39307 1.56579 2.37800 3.17845 3.23647 3.39157 3.43797 3.44595 3.83484 3.95557 4.21292 4.34161 4.41515 4.46037 4.47464 4.76798 4.85081 4.94449 5.13054 5.27676 5.33371 5.35864 5.43752 5.45277 5.56807 5.59793 5.64103 5.75231 5.76909 5.84102 5.98072 5.99429 6.06166 6.07548 6.10796 6.18289 6.31105 6.40488 6.47756 6.52537 6.58322 6.64607 6.74715 6.98957 7.47075 7.56428 7.60882 7.71512 7.75345 8.21349 8.32571 9.13575 9.74123 10.41037 11.31610 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016882 B = 0.002510 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.162113 B =11151.461121 C =12032.152470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.214 3.786 3 N -0.484 5.484 4 C 0.149 3.851 5 C -0.101 4.101 6 C -0.092 4.092 7 C -0.126 4.126 8 C -0.085 4.085 9 C -0.119 4.119 10 C -0.016 4.016 11 C -0.180 4.180 12 C 0.554 3.446 13 O -0.525 6.525 14 N -0.715 5.715 15 C 0.109 3.891 16 C 0.152 3.848 17 H 0.037 0.963 18 C -0.127 4.127 19 C -0.148 4.148 20 C 0.172 3.828 21 N -0.588 5.588 22 C -0.237 4.237 23 H 0.075 0.925 24 C 0.000 4.000 25 N -0.915 5.915 26 Si 0.911 3.089 27 H -0.283 1.283 28 H -0.290 1.290 29 H -0.284 1.284 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.133 0.867 37 H 0.145 0.855 38 H 0.393 0.607 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.026 0.974 46 H 0.072 0.928 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.564 20.449 -1.765 24.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.061 3.939 3 N -0.193 5.193 4 C 0.027 3.973 5 C -0.120 4.120 6 C -0.112 4.112 7 C -0.144 4.144 8 C -0.103 4.103 9 C -0.121 4.121 10 C -0.043 4.043 11 C -0.185 4.185 12 C 0.340 3.660 13 O -0.403 6.403 14 N -0.366 5.366 15 C -0.016 4.016 16 C 0.043 3.957 17 H 0.055 0.945 18 C -0.165 4.165 19 C -0.187 4.187 20 C 0.047 3.953 21 N -0.312 5.312 22 C -0.365 4.365 23 H 0.093 0.907 24 C -0.197 4.197 25 N -0.561 5.561 26 Si 0.740 3.260 27 H -0.209 1.209 28 H -0.215 1.215 29 H -0.211 1.211 30 H 0.103 0.897 31 H 0.087 0.913 32 H 0.125 0.875 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.151 0.849 37 H 0.163 0.837 38 H 0.227 0.773 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.044 0.956 46 H 0.090 0.910 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.112 21.037 -1.649 24.331 hybrid contribution 0.496 -1.101 0.747 1.420 sum 12.608 19.937 -0.901 23.606 Atomic orbital electron populations 1.21132 0.87171 1.03966 1.04608 1.21638 0.97764 0.86190 0.88329 1.67921 1.08158 1.28183 1.15056 1.19025 0.89230 0.93016 0.96048 1.20822 0.94214 0.96412 1.00547 1.20970 0.93690 0.98843 0.97713 1.20920 1.00443 0.92279 1.00755 1.21068 0.92442 0.98773 0.98043 1.18772 0.94971 0.93617 1.04760 1.22013 0.93277 0.97693 0.91316 1.20961 0.94062 0.95694 1.07779 1.17945 0.87307 0.83209 0.77562 1.90757 1.13366 1.86827 1.49394 1.46092 1.10720 1.06511 1.73318 1.22321 0.95857 0.80537 1.02851 1.21134 0.92972 0.86722 0.94878 0.94516 1.22621 0.99216 0.97794 0.96910 1.23006 1.00999 0.95352 0.99358 1.21455 0.90936 0.97550 0.85313 1.44468 1.60492 1.14252 1.11979 1.18930 1.16652 1.14111 0.86798 0.90697 1.24916 0.98379 0.99577 0.96836 1.69918 1.38552 1.26375 1.21209 0.86230 0.79749 0.78272 0.81700 1.20887 1.21532 1.21058 0.89660 0.91297 0.87503 0.84601 0.85205 0.85349 0.84909 0.83738 0.77295 0.91364 0.91080 0.91760 0.92482 0.92309 0.92292 0.95551 0.90952 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.45 8.82 36.01 0.32 -1.13 16 2 C 0.21 2.93 6.82 -82.14 -0.56 2.37 16 3 N -0.48 -6.53 10.20 -6.93 -0.07 -6.60 16 4 C 0.15 1.77 6.61 -84.79 -0.56 1.21 16 5 C -0.10 -0.94 9.97 -39.47 -0.39 -1.34 16 6 C -0.09 -0.65 9.94 -39.93 -0.40 -1.05 16 7 C -0.13 -0.85 9.96 -39.93 -0.40 -1.25 16 8 C -0.08 -0.66 9.77 -39.46 -0.39 -1.05 16 9 C -0.12 -1.26 5.74 -106.81 -0.61 -1.87 16 10 C -0.02 -0.17 9.38 -38.44 -0.36 -0.53 16 11 C -0.18 -2.36 5.88 -104.83 -0.62 -2.97 16 12 C 0.55 8.51 7.69 -12.37 -0.10 8.42 16 13 O -0.53 -9.72 13.31 5.30 0.07 -9.65 16 14 N -0.72 -10.27 5.30 -61.28 -0.32 -10.59 16 15 C 0.11 2.01 5.07 -4.04 -0.02 1.99 16 16 C 0.15 2.86 3.22 -66.95 -0.22 2.64 16 17 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 18 C -0.13 -2.02 6.09 -24.90 -0.15 -2.17 16 19 C -0.15 -2.62 7.08 -24.58 -0.17 -2.79 16 20 C 0.17 4.00 5.41 -2.53 -0.01 3.99 16 21 N -0.59 -14.18 3.13 -162.57 -0.51 -14.69 16 22 C -0.24 -6.35 9.75 -15.06 -0.15 -6.50 16 23 H 0.08 1.96 7.83 -52.48 -0.41 1.55 16 24 C 0.00 0.01 5.47 -17.43 -0.10 -0.08 16 25 N -0.91 -26.25 10.58 55.49 0.59 -25.67 16 26 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.11 1.53 5.82 -51.93 -0.30 1.23 16 33 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 34 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 35 H 0.13 0.54 8.06 -52.49 -0.42 0.11 16 36 H 0.13 0.72 8.06 -52.48 -0.42 0.29 16 37 H 0.15 1.08 6.53 -52.49 -0.34 0.74 16 38 H 0.39 4.38 6.41 -40.82 -0.26 4.12 16 39 H 0.07 1.41 8.07 -51.93 -0.42 0.99 16 40 H 0.07 1.50 7.91 -51.93 -0.41 1.09 16 41 H 0.06 1.01 7.80 -51.93 -0.41 0.61 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.03 0.67 8.06 -51.93 -0.42 0.25 16 46 H 0.07 1.88 6.94 -51.93 -0.36 1.52 16 47 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 380.82 15.07 5.74 5.74 Total: -1.00 -32.12 380.82 -11.11 -43.23 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -6.69 Total: 3.52 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -4.88 Total: -2.12 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.32 Total: -57.55 kcal Atomic # 8 Polarization: -9.72 SS G_CDS: 0.07 Total: -9.65 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.12 -11.11 -43.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027916719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.810 kcal (2) G-P(sol) polarization free energy of solvation -32.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds