Wall clock time and date at job start Tue Mar 31 2020 22:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30819 * 119.23006 * 2 1 4 4 C 1.33786 * 121.71796 * 179.97438 * 3 2 1 5 5 C 1.40539 * 120.82825 * 180.02562 * 4 3 2 6 6 C 1.36126 * 119.81475 * 179.97438 * 5 4 3 7 7 C 1.39337 * 121.09822 * 359.97438 * 6 5 4 8 8 C 1.36137 * 120.83583 * 0.02562 * 7 6 5 9 9 C 1.40556 * 119.62001 * 359.97438 * 8 7 6 10 10 C 1.40492 * 121.22431 * 180.30094 * 9 8 7 11 11 C 1.39036 * 117.96021 * 180.21043 * 10 9 8 12 12 C 1.47758 * 120.26833 * 179.74597 * 11 10 9 13 13 O 1.21570 * 120.00136 * 173.64565 * 12 11 10 14 14 N 1.34776 * 120.00155 * 353.64019 * 12 11 10 15 15 C 1.46501 * 120.00370 * 180.02562 * 14 12 11 16 16 C 1.52995 * 109.47254 * 177.81474 * 15 14 12 17 17 H 1.09002 * 109.99890 * 56.00323 * 16 15 14 18 18 C 1.54329 * 109.88242 * 294.90800 * 16 15 14 19 19 C 1.55153 * 102.93914 * 218.39000 * 18 16 15 20 20 C 1.54913 * 101.58650 * 35.50044 * 19 18 16 21 21 N 1.47019 * 109.88217 * 177.09881 * 16 15 14 22 22 C 1.36945 * 125.64893 * 298.31152 * 21 16 15 23 23 H 1.08005 * 119.99591 * 345.28977 * 22 21 16 24 24 C 1.38810 * 119.99670 * 165.29232 * 22 21 16 25 25 N 1.31612 * 120.00651 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99518 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.46980 * 60.00157 * 26 24 22 28 28 H 1.48501 * 109.46983 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47092 * 299.99713 * 26 24 22 30 30 H 1.08998 * 109.47098 * 263.10126 * 1 2 3 31 31 H 1.08997 * 109.46901 * 23.10005 * 1 2 3 32 32 H 1.09001 * 109.46843 * 143.09981 * 1 2 3 33 33 H 1.08005 * 120.08847 * 0.02562 * 5 4 3 34 34 H 1.08006 * 119.44787 * 180.02562 * 6 5 4 35 35 H 1.08001 * 119.58632 * 179.97438 * 7 6 5 36 36 H 1.08008 * 120.19243 * 180.02562 * 8 7 6 37 37 H 1.07995 * 121.01760 * 359.97438 * 10 9 8 38 38 H 0.96997 * 119.99769 * 0.02562 * 14 12 11 39 39 H 1.08998 * 109.46936 * 57.81044 * 15 14 12 40 40 H 1.09005 * 109.46720 * 297.81616 * 15 14 12 41 41 H 1.08999 * 110.71731 * 336.75030 * 18 16 15 42 42 H 1.08993 * 110.71759 * 100.02754 * 18 16 15 43 43 H 1.09006 * 111.00462 * 153.57641 * 19 18 16 44 44 H 1.08997 * 111.00451 * 277.42661 * 19 18 16 45 45 H 1.08996 * 110.36290 * 81.82565 * 20 19 18 46 46 H 1.08996 * 110.37071 * 204.04044 * 20 19 18 47 47 H 0.96997 * 120.00230 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1459 1.1416 0.0000 4 6 3.4825 1.1997 0.0005 5 6 4.1496 2.4366 0.0010 6 6 5.5104 2.4717 0.0021 7 6 6.2606 1.2975 0.0032 8 6 5.6512 0.0801 0.0027 9 6 4.2476 0.0058 0.0016 10 6 3.5838 -1.2324 0.0074 11 6 2.1935 -1.2267 0.0015 12 6 1.4435 -2.4998 0.0015 13 8 0.2329 -2.4921 0.1128 14 7 2.1014 -3.6695 -0.1220 15 6 1.3578 -4.9318 -0.1226 16 6 2.3289 -6.0957 -0.3297 17 1 3.1072 -6.0721 0.4331 18 6 2.9658 -6.0046 -1.7324 19 6 3.0338 -7.4886 -2.1802 20 6 1.7352 -8.0608 -1.5590 21 7 1.6016 -7.3717 -0.2626 22 6 0.9147 -7.8426 0.8245 23 1 1.0659 -7.3933 1.7949 24 6 0.0242 -8.8974 0.6791 25 7 -0.1604 -9.4447 -0.5035 26 14 -0.9123 -9.5403 2.1622 27 1 -1.7396 -8.4489 2.7363 28 1 -1.7928 -10.6606 1.7440 29 1 0.0506 -10.0221 3.1848 30 1 -0.3633 -0.1234 1.0202 31 1 -0.3633 0.9453 -0.4032 32 1 -0.3633 -0.8218 -0.6171 33 1 3.5842 3.3568 0.0015 34 1 6.0171 3.4255 0.0029 35 1 7.3391 1.3537 0.0036 36 1 6.2429 -0.8235 0.0040 37 1 4.1366 -2.1601 0.0124 38 1 3.0673 -3.6757 -0.2105 39 1 0.6253 -4.9216 -0.9297 40 1 0.8450 -5.0517 0.8318 41 1 2.3332 -5.4270 -2.4064 42 1 3.9650 -5.5730 -1.6749 43 1 3.0158 -7.5700 -3.2671 44 1 3.9142 -7.9812 -1.7676 45 1 0.8797 -7.8384 -2.1967 46 1 1.8275 -9.1367 -1.4109 47 1 -0.7824 -10.1820 -0.6050 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027916719.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:37 Heat of formation + Delta-G solvation = 23.774284 kcal Electronic energy + Delta-G solvation = -28603.444438 eV Core-core repulsion = 24750.707597 eV Total energy + Delta-G solvation = -3852.736841 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.14202 -40.66252 -39.31691 -38.03894 -36.00372 -34.71417 -34.29883 -32.84897 -31.71360 -31.23669 -30.12139 -28.75235 -26.79776 -26.13593 -25.05351 -23.58757 -23.04565 -22.20089 -21.76380 -21.19657 -19.60038 -18.79677 -18.44231 -17.84717 -17.20559 -16.70788 -16.58183 -16.50340 -15.98191 -15.70930 -15.50072 -15.49301 -15.24661 -14.74576 -14.54973 -14.35081 -14.01244 -13.96848 -13.88854 -13.64168 -13.40258 -13.17743 -12.94191 -12.85462 -12.69181 -12.65150 -12.40484 -12.34082 -12.06182 -11.84787 -11.71286 -11.61218 -11.47682 -11.39106 -11.04365 -10.67615 -10.50400 -10.17326 -9.71005 -9.25131 -8.85545 -7.88571 -5.26018 -0.82900 -0.41151 0.84500 1.44135 1.47537 1.51848 1.52832 2.00813 2.19441 2.49299 3.04187 3.12876 3.31159 3.42873 3.51301 3.60557 3.74244 3.81514 3.94746 3.99706 4.09611 4.23648 4.27553 4.33581 4.40625 4.45411 4.55506 4.57748 4.66906 4.71773 4.74220 4.82539 4.92823 4.96789 5.00642 5.06370 5.14514 5.17559 5.25913 5.37603 5.37793 5.46730 5.47618 5.50783 5.57339 5.67240 5.79184 5.88355 6.23151 6.47951 6.82170 7.09104 7.16066 7.76602 8.42131 9.22158 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.016882 B = 0.002510 C = 0.002327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.162113 B =11151.461121 C =12032.152470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.194 3.806 3 N -0.504 5.504 4 C 0.123 3.877 5 C -0.127 4.127 6 C -0.074 4.074 7 C -0.121 4.121 8 C -0.084 4.084 9 C -0.134 4.134 10 C 0.005 3.995 11 C -0.204 4.204 12 C 0.556 3.444 13 O -0.566 6.566 14 N -0.699 5.699 15 C 0.130 3.870 16 C 0.148 3.852 17 H 0.055 0.945 18 C -0.114 4.114 19 C -0.133 4.133 20 C 0.173 3.827 21 N -0.610 5.610 22 C -0.240 4.240 23 H 0.077 0.923 24 C -0.059 4.059 25 N -0.945 5.945 26 Si 0.970 3.030 27 H -0.283 1.283 28 H -0.294 1.294 29 H -0.273 1.273 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.138 0.862 34 H 0.162 0.838 35 H 0.164 0.836 36 H 0.165 0.835 37 H 0.180 0.820 38 H 0.413 0.587 39 H 0.039 0.961 40 H 0.037 0.963 41 H 0.064 0.936 42 H 0.108 0.892 43 H 0.081 0.919 44 H 0.072 0.928 45 H -0.009 1.009 46 H 0.035 0.965 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.347 22.412 -1.652 29.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.041 3.959 3 N -0.214 5.214 4 C 0.002 3.998 5 C -0.145 4.145 6 C -0.094 4.094 7 C -0.139 4.139 8 C -0.102 4.102 9 C -0.136 4.136 10 C -0.021 4.021 11 C -0.209 4.209 12 C 0.344 3.656 13 O -0.447 6.447 14 N -0.352 5.352 15 C 0.004 3.996 16 C 0.041 3.959 17 H 0.073 0.927 18 C -0.152 4.152 19 C -0.172 4.172 20 C 0.048 3.952 21 N -0.334 5.334 22 C -0.369 4.369 23 H 0.095 0.905 24 C -0.253 4.253 25 N -0.593 5.593 26 Si 0.798 3.202 27 H -0.209 1.209 28 H -0.220 1.220 29 H -0.199 1.199 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.156 0.844 34 H 0.180 0.820 35 H 0.182 0.818 36 H 0.182 0.818 37 H 0.197 0.803 38 H 0.251 0.749 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.083 0.917 42 H 0.126 0.874 43 H 0.100 0.900 44 H 0.090 0.910 45 H 0.009 0.991 46 H 0.054 0.946 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.960 23.042 -1.530 28.652 hybrid contribution -0.793 -1.508 0.721 1.850 sum 16.167 21.534 -0.809 26.940 Atomic orbital electron populations 1.20978 0.87821 1.03560 1.03803 1.21623 0.97768 0.86875 0.89656 1.67877 1.09558 1.28052 1.15865 1.19507 0.88888 0.94818 0.96588 1.21010 0.95488 0.95728 1.02321 1.21425 0.92723 1.00750 0.94497 1.21410 1.02264 0.91535 0.98645 1.21457 0.91101 1.00725 0.96959 1.19031 0.96451 0.92910 1.05179 1.22370 0.92054 0.99276 0.88443 1.20639 0.95162 0.93810 1.11292 1.18310 0.86947 0.84018 0.76346 1.90744 1.15374 1.87446 1.51136 1.45709 1.11435 1.04795 1.73230 1.21745 0.95448 0.82517 0.99872 1.21357 0.92548 0.84309 0.97732 0.92727 1.22627 1.01603 0.96732 0.94229 1.22867 0.97761 0.96107 1.00417 1.21268 0.92941 0.95888 0.85119 1.44729 1.60470 1.16788 1.11451 1.19258 1.16204 1.13511 0.87947 0.90512 1.25667 0.99862 1.00526 0.99220 1.70123 1.39341 1.26907 1.22915 0.85291 0.78517 0.77321 0.79061 1.20913 1.22028 1.19892 0.90399 0.90418 0.89374 0.84389 0.82032 0.81828 0.81778 0.80314 0.74905 0.94266 0.94457 0.91732 0.87368 0.90029 0.90972 0.99137 0.94635 0.94322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.93 8.82 71.24 0.63 -2.30 16 2 C 0.19 5.48 6.82 43.28 0.30 5.77 16 3 N -0.50 -13.76 10.20 -175.85 -1.79 -15.56 16 4 C 0.12 2.78 6.61 40.29 0.27 3.05 16 5 C -0.13 -2.11 9.97 22.34 0.22 -1.89 16 6 C -0.07 -0.73 9.94 22.04 0.22 -0.52 16 7 C -0.12 -0.98 9.96 22.05 0.22 -0.76 16 8 C -0.08 -0.90 9.77 22.35 0.22 -0.68 16 9 C -0.13 -2.43 5.74 -21.28 -0.12 -2.55 16 10 C 0.00 0.08 9.38 23.01 0.22 0.30 16 11 C -0.20 -5.27 5.88 -20.00 -0.12 -5.39 16 12 C 0.56 17.29 7.69 86.76 0.67 17.96 16 13 O -0.57 -22.20 13.31 -3.93 -0.05 -22.25 16 14 N -0.70 -19.25 5.30 -466.05 -2.47 -21.73 16 15 C 0.13 4.87 5.07 86.38 0.44 5.30 16 16 C 0.15 5.38 3.22 45.34 0.15 5.52 16 17 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 18 C -0.11 -3.22 6.09 31.78 0.19 -3.03 16 19 C -0.13 -4.39 7.08 31.99 0.23 -4.16 16 20 C 0.17 8.23 5.41 86.86 0.47 8.70 16 21 N -0.61 -29.89 3.13 -668.26 -2.09 -31.98 16 22 C -0.24 -13.20 9.75 84.03 0.82 -12.38 16 23 H 0.08 4.09 7.83 -2.91 -0.02 4.06 16 24 C -0.06 -3.35 5.47 84.86 0.46 -2.88 16 25 N -0.95 -56.77 10.58 21.65 0.23 -56.54 16 26 Si 0.97 46.23 29.55 68.60 2.03 48.25 16 27 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 28 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 29 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 30 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.09 2.78 5.82 -2.39 -0.01 2.77 16 33 H 0.14 2.10 8.06 -2.91 -0.02 2.07 16 34 H 0.16 0.55 8.06 -2.91 -0.02 0.53 16 35 H 0.16 0.24 8.06 -2.91 -0.02 0.22 16 36 H 0.16 0.71 8.06 -2.91 -0.02 0.69 16 37 H 0.18 1.81 6.53 -2.91 -0.02 1.79 16 38 H 0.41 7.78 6.41 -92.71 -0.59 7.18 16 39 H 0.04 1.68 8.07 -2.39 -0.02 1.66 16 40 H 0.04 1.63 7.91 -2.38 -0.02 1.61 16 41 H 0.06 1.86 7.80 -2.39 -0.02 1.84 16 42 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 43 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 44 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 45 H -0.01 -0.51 8.06 -2.39 -0.02 -0.53 16 46 H 0.04 1.92 6.94 -2.39 -0.02 1.90 16 47 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -77.13 380.82 1.72 -75.41 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: 0.40 Total: 14.33 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: 5.47 Total: 10.07 kcal Atomic # 7 Polarization: -119.68 SS G_CDS: -6.13 Total: -125.80 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.05 Total: -22.25 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -77.13 1.72 -75.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027916719.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.185 kcal (2) G-P(sol) polarization free energy of solvation -77.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.411 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds