Wall clock time and date at job start Tue Mar 31 2020 22:27:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39235 * 119.15327 * 2 1 4 4 C 1.36633 * 119.90273 * 180.02562 * 3 2 1 5 5 C 1.40799 * 118.15816 * 0.02562 * 4 3 2 6 6 C 1.40477 * 121.26342 * 180.02562 * 5 4 3 7 7 C 1.36311 * 120.08371 * 179.97438 * 6 5 4 8 8 C 1.38909 * 121.06010 * 0.02562 * 7 6 5 9 9 C 1.38709 * 120.72466 * 0.02562 * 8 7 6 10 10 C 1.47439 * 120.33276 * 179.97438 * 9 8 7 11 11 O 1.21599 * 119.99999 * 179.97438 * 10 9 8 12 12 N 1.34772 * 119.99787 * 359.97438 * 10 9 8 13 13 C 1.46504 * 119.99676 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46991 * 184.66328 * 13 12 10 15 15 H 1.08997 * 110.00037 * 54.40463 * 14 13 12 16 16 C 1.54328 * 109.88253 * 293.30821 * 14 13 12 17 17 C 1.55271 * 103.00829 * 218.46742 * 16 14 13 18 18 C 1.54911 * 101.52965 * 35.36431 * 17 16 14 19 19 N 1.47023 * 109.88399 * 175.50576 * 14 13 12 20 20 C 1.36945 * 125.64364 * 298.33764 * 19 14 13 21 21 H 1.07999 * 119.99844 * 346.28822 * 20 19 14 22 22 C 1.38813 * 119.99936 * 166.29408 * 20 19 14 23 23 N 1.31621 * 119.99796 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00121 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47101 * 59.99613 * 24 22 20 26 26 H 1.48497 * 109.47436 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47252 * 299.99939 * 24 22 20 28 28 C 1.41552 * 118.93987 * 0.24887 * 5 4 3 29 29 N 1.31233 * 119.15833 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47341 * 89.99723 * 1 2 3 31 31 H 1.09008 * 109.46888 * 209.99706 * 1 2 3 32 32 H 1.08998 * 109.47470 * 329.99535 * 1 2 3 33 33 H 1.08000 * 120.04205 * 0.05218 * 3 2 1 34 34 H 1.08002 * 120.91777 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.95433 * 359.95750 * 6 5 4 36 36 H 1.08003 * 119.47069 * 179.97438 * 7 6 5 37 37 H 1.08001 * 119.63963 * 179.97438 * 8 7 6 38 38 H 0.97005 * 120.00401 * 0.02562 * 12 10 9 39 39 H 1.09000 * 109.47103 * 64.66430 * 13 12 10 40 40 H 1.08998 * 109.47218 * 304.66198 * 13 12 10 41 41 H 1.08998 * 110.71926 * 336.75461 * 16 14 13 42 42 H 1.09000 * 110.71633 * 100.02768 * 16 14 13 43 43 H 1.09002 * 110.96391 * 277.33660 * 17 16 14 44 44 H 1.09005 * 111.09857 * 153.45022 * 17 16 14 45 45 H 1.08998 * 110.36709 * 204.23305 * 18 17 16 46 46 H 1.09001 * 110.36536 * 82.01625 * 18 17 16 47 47 H 0.97000 * 119.99954 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2160 0.0000 4 6 3.5515 1.2338 -0.0005 5 6 4.2321 0.0013 -0.0016 6 6 5.6357 -0.0565 -0.0017 7 6 6.2699 -1.2630 -0.0022 8 6 5.5500 -2.4511 -0.0032 9 6 4.1630 -2.4393 -0.0043 10 6 3.4076 -3.7054 -0.0059 11 8 2.1917 -3.6880 -0.0064 12 7 4.0647 -4.8821 -0.0070 13 6 3.3141 -6.1402 -0.0081 14 6 4.2875 -7.3149 0.1082 15 1 4.9246 -7.1860 0.9831 16 6 5.1557 -7.4051 -1.1646 17 6 5.2746 -8.9354 -1.3989 18 6 3.8806 -9.4286 -0.9369 19 7 3.5390 -8.5758 0.2160 20 6 2.6689 -8.9038 1.2214 21 1 2.6480 -8.3196 2.1295 22 6 1.8139 -9.9873 1.0733 23 7 1.8392 -10.6990 -0.0336 24 14 0.6276 -10.4352 2.4448 25 1 -0.2838 -9.2918 2.7041 26 1 -0.1688 -11.6223 2.0426 27 1 1.3926 -10.7480 3.6786 28 6 3.4788 -1.1971 -0.0075 29 7 2.1464 -1.1460 -0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6322 2.1436 0.0009 34 1 4.0942 2.1676 -0.0001 35 1 6.2130 0.8564 -0.0016 36 1 7.3494 -1.2959 -0.0027 37 1 6.0761 -3.3943 -0.0041 38 1 5.0347 -4.8960 -0.0063 39 1 2.7503 -6.2261 -0.9369 40 1 2.6261 -6.1536 0.8372 41 1 4.6566 -6.9254 -2.0065 42 1 6.1373 -6.9630 -0.9938 43 1 6.0647 -9.3641 -0.7824 44 1 5.4387 -9.1594 -2.4530 45 1 3.9295 -10.4744 -0.6339 46 1 3.1490 -9.2991 -1.7344 47 1 1.2415 -11.4559 -0.1373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027962250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:44 Heat of formation + Delta-G solvation = 48.012141 kcal Electronic energy + Delta-G solvation = -28670.194163 eV Core-core repulsion = 24818.508354 eV Total energy + Delta-G solvation = -3851.685809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15756 -39.17376 -37.63216 -37.20785 -34.16387 -33.62034 -32.46108 -32.12095 -30.69897 -29.50750 -28.45952 -28.02563 -25.02560 -24.26512 -24.06608 -22.71571 -22.61339 -20.44702 -20.00121 -19.48070 -18.29389 -17.90888 -16.69770 -16.61300 -16.04120 -15.52910 -15.12685 -14.98294 -14.75480 -14.45134 -14.34471 -14.03639 -13.81084 -13.72747 -13.23425 -13.07117 -12.98082 -12.77749 -12.37683 -12.22851 -12.06089 -11.84859 -11.73806 -11.59276 -11.52384 -11.29510 -10.91643 -10.74390 -10.66942 -10.17366 -10.10451 -9.92585 -9.83303 -9.75916 -9.66289 -9.10507 -8.92131 -8.63778 -8.54100 -8.36361 -6.81180 -5.73014 -3.09456 -0.02879 0.58864 1.59077 2.55911 3.37204 3.41709 3.46989 3.48398 3.50770 4.00552 4.04274 4.31744 4.42235 4.51712 4.56099 4.61244 4.79313 4.86192 5.03363 5.13714 5.31089 5.36765 5.43153 5.45519 5.49121 5.55416 5.63728 5.66074 5.69306 5.81907 5.83947 5.90544 5.95724 6.07517 6.10020 6.17636 6.26638 6.29035 6.49213 6.56631 6.59302 6.65838 6.78464 6.87847 7.11660 7.54968 7.63461 7.82352 7.85686 7.96872 8.29188 8.65637 9.21058 9.81547 10.48438 11.38723 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.002768 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.891021 B =10113.122909 C =11571.498857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.157 3.843 3 C -0.172 4.172 4 C -0.059 4.059 5 C -0.117 4.117 6 C -0.075 4.075 7 C -0.127 4.127 8 C -0.066 4.066 9 C -0.101 4.101 10 C 0.544 3.456 11 O -0.499 6.499 12 N -0.723 5.723 13 C 0.112 3.888 14 C 0.152 3.848 15 H 0.037 0.963 16 C -0.127 4.127 17 C -0.148 4.148 18 C 0.172 3.828 19 N -0.589 5.589 20 C -0.233 4.233 21 H 0.075 0.925 22 C -0.002 4.002 23 N -0.917 5.917 24 Si 0.911 3.089 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.167 3.833 29 N -0.436 5.436 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.391 0.609 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.074 0.926 46 H 0.025 0.975 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.682 24.457 -2.254 26.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.004 3.996 3 C -0.192 4.192 4 C -0.084 4.084 5 C -0.119 4.119 6 C -0.094 4.094 7 C -0.145 4.145 8 C -0.087 4.087 9 C -0.105 4.105 10 C 0.329 3.671 11 O -0.373 6.373 12 N -0.377 5.377 13 C -0.013 4.013 14 C 0.043 3.957 15 H 0.055 0.945 16 C -0.165 4.165 17 C -0.187 4.187 18 C 0.047 3.953 19 N -0.313 5.313 20 C -0.361 4.361 21 H 0.093 0.907 22 C -0.199 4.199 23 N -0.563 5.563 24 Si 0.741 3.259 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.043 3.957 29 N -0.144 5.144 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.225 0.775 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.092 0.908 46 H 0.043 0.957 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.187 23.356 -2.210 24.848 hybrid contribution 0.342 0.632 0.642 0.964 sum 8.529 23.988 -1.568 25.508 Atomic orbital electron populations 1.20795 0.88542 1.03780 1.03391 1.21735 0.97612 0.88025 0.92188 1.21785 0.95070 0.99389 1.02944 1.21428 0.94481 0.96958 0.95568 1.18825 0.94797 0.94001 1.04296 1.21116 0.92542 0.98633 0.97095 1.20823 1.00569 0.91926 1.01144 1.21481 0.92598 0.99184 0.95395 1.20094 0.93188 0.92884 1.04354 1.17932 0.87720 0.83037 0.78456 1.90861 1.12680 1.86805 1.46943 1.46089 1.09969 1.06185 1.75411 1.22212 0.95744 0.80896 1.02437 1.21131 0.92111 0.87046 0.95378 0.94501 1.22647 0.98440 0.97570 0.97893 1.23023 1.00885 0.95041 0.99745 1.21467 0.88952 0.96107 0.88788 1.44478 1.50302 1.10873 1.25646 1.18951 1.11494 1.11672 0.94011 0.90675 1.24893 0.98663 0.98989 0.97324 1.69928 1.40313 1.20560 1.25498 0.86222 0.81006 0.77664 0.81036 1.20908 1.21577 1.21097 1.18611 0.89389 0.91381 0.96282 1.68199 1.07746 1.27661 1.10755 0.90077 0.89764 0.90708 0.84536 0.84277 0.85011 0.84838 0.84679 0.77512 0.92000 0.91080 0.91781 0.92447 0.92326 0.92339 0.90797 0.95698 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.14 36.00 0.37 -0.69 16 2 C 0.16 1.96 6.78 -82.48 -0.56 1.40 16 3 C -0.17 -1.58 9.64 -39.79 -0.38 -1.96 16 4 C -0.06 -0.51 9.90 -39.19 -0.39 -0.90 16 5 C -0.12 -1.30 5.74 -106.82 -0.61 -1.92 16 6 C -0.07 -0.62 9.75 -39.43 -0.38 -1.01 16 7 C -0.13 -1.03 9.93 -40.03 -0.40 -1.43 16 8 C -0.07 -0.68 9.52 -39.16 -0.37 -1.06 16 9 C -0.10 -1.48 5.91 -104.61 -0.62 -2.10 16 10 C 0.54 9.78 7.76 -12.52 -0.10 9.68 16 11 O -0.50 -11.15 15.19 5.28 0.08 -11.07 16 12 N -0.72 -11.75 5.35 -61.38 -0.33 -12.08 16 13 C 0.11 2.26 5.09 -4.04 -0.02 2.24 16 14 C 0.15 3.05 3.22 -66.95 -0.22 2.83 16 15 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 16 C -0.13 -2.13 6.07 -24.83 -0.15 -2.28 16 17 C -0.15 -2.73 7.10 -24.52 -0.17 -2.90 16 18 C 0.17 4.13 5.42 -2.53 -0.01 4.12 16 19 N -0.59 -14.83 3.13 -162.57 -0.51 -15.34 16 20 C -0.23 -6.50 9.73 -15.06 -0.15 -6.64 16 21 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 22 C 0.00 -0.05 5.47 -17.43 -0.10 -0.14 16 23 N -0.92 -27.00 10.54 55.49 0.58 -26.42 16 24 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 25 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 28 C 0.17 2.49 6.61 -84.58 -0.56 1.93 16 29 N -0.44 -7.14 8.33 -7.01 -0.06 -7.19 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.98 8.14 -51.92 -0.42 0.56 16 32 H 0.07 0.50 8.07 -51.93 -0.42 0.09 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 36 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 37 H 0.14 1.07 6.37 -52.49 -0.33 0.74 16 38 H 0.39 4.94 6.27 -40.82 -0.26 4.68 16 39 H 0.06 1.38 8.03 -51.93 -0.42 0.96 16 40 H 0.07 1.65 7.86 -51.93 -0.41 1.25 16 41 H 0.06 1.07 7.78 -51.93 -0.40 0.66 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.07 1.98 6.86 -51.93 -0.36 1.62 16 46 H 0.02 0.65 8.08 -51.93 -0.42 0.24 16 47 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 383.74 15.07 5.78 5.78 Total: -1.00 -35.82 383.74 -11.08 -46.90 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.79 Total: 2.74 kcal Atomic # 6 Polarization: 4.01 SS G_CDS: -4.82 Total: -0.82 kcal Atomic # 7 Polarization: -60.72 SS G_CDS: -0.31 Total: -61.03 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.08 Total: -11.07 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -35.82 -11.08 -46.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027962250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.917 kcal (2) G-P(sol) polarization free energy of solvation -35.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds