Wall clock time and date at job start Tue Mar 31 2020 22:27:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.39235 * 119.15327 * 2 1 4 4 C 1.36633 * 119.90273 * 180.02562 * 3 2 1 5 5 C 1.40799 * 118.15816 * 0.02562 * 4 3 2 6 6 C 1.40477 * 121.26342 * 180.02562 * 5 4 3 7 7 C 1.36311 * 120.08371 * 179.97438 * 6 5 4 8 8 C 1.38909 * 121.06010 * 0.02562 * 7 6 5 9 9 C 1.38709 * 120.72466 * 0.02562 * 8 7 6 10 10 C 1.47439 * 120.33276 * 179.97438 * 9 8 7 11 11 O 1.21599 * 119.99999 * 179.97438 * 10 9 8 12 12 N 1.34772 * 119.99787 * 359.97438 * 10 9 8 13 13 C 1.46504 * 119.99676 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46991 * 184.66328 * 13 12 10 15 15 H 1.08997 * 110.00037 * 54.40463 * 14 13 12 16 16 C 1.54328 * 109.88253 * 293.30821 * 14 13 12 17 17 C 1.55271 * 103.00829 * 218.46742 * 16 14 13 18 18 C 1.54911 * 101.52965 * 35.36431 * 17 16 14 19 19 N 1.47023 * 109.88399 * 175.50576 * 14 13 12 20 20 C 1.36945 * 125.64364 * 298.33764 * 19 14 13 21 21 H 1.07999 * 119.99844 * 346.28822 * 20 19 14 22 22 C 1.38813 * 119.99936 * 166.29408 * 20 19 14 23 23 N 1.31621 * 119.99796 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00121 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47101 * 59.99613 * 24 22 20 26 26 H 1.48497 * 109.47436 * 180.02562 * 24 22 20 27 27 H 1.48500 * 109.47252 * 299.99939 * 24 22 20 28 28 C 1.41552 * 118.93987 * 0.24887 * 5 4 3 29 29 N 1.31233 * 119.15833 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47341 * 89.99723 * 1 2 3 31 31 H 1.09008 * 109.46888 * 209.99706 * 1 2 3 32 32 H 1.08998 * 109.47470 * 329.99535 * 1 2 3 33 33 H 1.08000 * 120.04205 * 0.05218 * 3 2 1 34 34 H 1.08002 * 120.91777 * 180.02562 * 4 3 2 35 35 H 1.08005 * 119.95433 * 359.95750 * 6 5 4 36 36 H 1.08003 * 119.47069 * 179.97438 * 7 6 5 37 37 H 1.08001 * 119.63963 * 179.97438 * 8 7 6 38 38 H 0.97005 * 120.00401 * 0.02562 * 12 10 9 39 39 H 1.09000 * 109.47103 * 64.66430 * 13 12 10 40 40 H 1.08998 * 109.47218 * 304.66198 * 13 12 10 41 41 H 1.08998 * 110.71926 * 336.75461 * 16 14 13 42 42 H 1.09000 * 110.71633 * 100.02768 * 16 14 13 43 43 H 1.09002 * 110.96391 * 277.33660 * 17 16 14 44 44 H 1.09005 * 111.09857 * 153.45022 * 17 16 14 45 45 H 1.08998 * 110.36709 * 204.23305 * 18 17 16 46 46 H 1.09001 * 110.36536 * 82.01625 * 18 17 16 47 47 H 0.97000 * 119.99954 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1852 1.2160 0.0000 4 6 3.5515 1.2338 -0.0005 5 6 4.2321 0.0013 -0.0016 6 6 5.6357 -0.0565 -0.0017 7 6 6.2699 -1.2630 -0.0022 8 6 5.5500 -2.4511 -0.0032 9 6 4.1630 -2.4393 -0.0043 10 6 3.4076 -3.7054 -0.0059 11 8 2.1917 -3.6880 -0.0064 12 7 4.0647 -4.8821 -0.0070 13 6 3.3141 -6.1402 -0.0081 14 6 4.2875 -7.3149 0.1082 15 1 4.9246 -7.1860 0.9831 16 6 5.1557 -7.4051 -1.1646 17 6 5.2746 -8.9354 -1.3989 18 6 3.8806 -9.4286 -0.9369 19 7 3.5390 -8.5758 0.2160 20 6 2.6689 -8.9038 1.2214 21 1 2.6480 -8.3196 2.1295 22 6 1.8139 -9.9873 1.0733 23 7 1.8392 -10.6990 -0.0336 24 14 0.6276 -10.4352 2.4448 25 1 -0.2838 -9.2918 2.7041 26 1 -0.1688 -11.6223 2.0426 27 1 1.3926 -10.7480 3.6786 28 6 3.4788 -1.1971 -0.0075 29 7 2.1464 -1.1460 -0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3634 0.8899 0.5139 33 1 1.6322 2.1436 0.0009 34 1 4.0942 2.1676 -0.0001 35 1 6.2130 0.8564 -0.0016 36 1 7.3494 -1.2959 -0.0027 37 1 6.0761 -3.3943 -0.0041 38 1 5.0347 -4.8960 -0.0063 39 1 2.7503 -6.2261 -0.9369 40 1 2.6261 -6.1536 0.8372 41 1 4.6566 -6.9254 -2.0065 42 1 6.1373 -6.9630 -0.9938 43 1 6.0647 -9.3641 -0.7824 44 1 5.4387 -9.1594 -2.4530 45 1 3.9295 -10.4744 -0.6339 46 1 3.1490 -9.2991 -1.7344 47 1 1.2415 -11.4559 -0.1373 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027962250.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:43 Heat of formation + Delta-G solvation = 23.743299 kcal Electronic energy + Delta-G solvation = -28671.246539 eV Core-core repulsion = 24818.508354 eV Total energy + Delta-G solvation = -3852.738185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.00611 -40.52251 -39.22208 -38.11348 -35.75417 -34.50275 -34.35614 -32.92103 -31.78524 -31.24810 -29.98509 -28.83818 -26.79241 -25.91175 -24.89949 -23.89655 -23.37944 -22.06967 -21.40134 -21.09738 -19.16566 -19.05720 -18.49780 -17.61179 -17.07601 -17.02942 -16.44820 -16.36359 -15.86665 -15.71391 -15.66199 -15.51482 -14.92695 -14.72795 -14.59011 -14.03923 -14.02390 -13.84496 -13.77344 -13.65513 -13.40536 -13.11632 -13.03300 -12.96842 -12.88670 -12.68819 -12.29914 -12.28299 -12.07744 -11.87838 -11.70338 -11.49721 -11.46713 -11.40818 -11.09364 -10.70322 -10.11260 -10.10518 -9.67565 -9.24232 -8.88443 -7.90549 -5.27993 -0.81261 -0.16840 0.77109 1.40820 1.45073 1.50501 1.78987 2.11520 2.22409 2.47774 3.14785 3.24527 3.28395 3.54551 3.69565 3.73656 3.85158 3.92356 3.97648 3.98563 4.00447 4.20070 4.25121 4.37577 4.40988 4.45340 4.53397 4.64597 4.69135 4.71928 4.73927 4.95258 4.95530 4.98425 5.00461 5.08394 5.13419 5.15857 5.21353 5.23800 5.36095 5.37934 5.44744 5.55509 5.61399 5.65997 5.77163 5.86792 6.21358 6.61731 7.07270 7.12705 7.33932 7.74209 8.39415 9.19786 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.002768 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.891021 B =10113.122909 C =11571.498857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.137 3.863 3 C -0.177 4.177 4 C -0.045 4.045 5 C -0.136 4.136 6 C -0.052 4.052 7 C -0.130 4.130 8 C -0.042 4.042 9 C -0.154 4.154 10 C 0.540 3.460 11 O -0.560 6.560 12 N -0.706 5.706 13 C 0.134 3.866 14 C 0.149 3.851 15 H 0.052 0.948 16 C -0.114 4.114 17 C -0.132 4.132 18 C 0.172 3.828 19 N -0.611 5.611 20 C -0.242 4.242 21 H 0.073 0.927 22 C -0.059 4.059 23 N -0.945 5.945 24 Si 0.971 3.029 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.272 1.272 28 C 0.134 3.866 29 N -0.506 5.506 30 H 0.085 0.915 31 H 0.051 0.949 32 H 0.109 0.891 33 H 0.174 0.826 34 H 0.188 0.812 35 H 0.179 0.821 36 H 0.178 0.822 37 H 0.159 0.841 38 H 0.412 0.588 39 H 0.031 0.969 40 H 0.028 0.972 41 H 0.064 0.936 42 H 0.110 0.890 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.039 0.961 46 H -0.011 1.011 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.077 28.415 -2.130 31.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.014 4.014 3 C -0.197 4.197 4 C -0.070 4.070 5 C -0.138 4.138 6 C -0.070 4.070 7 C -0.148 4.148 8 C -0.062 4.062 9 C -0.158 4.158 10 C 0.328 3.672 11 O -0.439 6.439 12 N -0.361 5.361 13 C 0.007 3.993 14 C 0.042 3.958 15 H 0.070 0.930 16 C -0.151 4.151 17 C -0.170 4.170 18 C 0.047 3.953 19 N -0.335 5.335 20 C -0.371 4.371 21 H 0.091 0.909 22 C -0.253 4.253 23 N -0.593 5.593 24 Si 0.799 3.201 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.197 1.197 28 C 0.011 3.989 29 N -0.215 5.215 30 H 0.104 0.896 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.192 0.808 34 H 0.205 0.795 35 H 0.196 0.804 36 H 0.195 0.805 37 H 0.176 0.824 38 H 0.250 0.750 39 H 0.049 0.951 40 H 0.046 0.954 41 H 0.082 0.918 42 H 0.128 0.872 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.057 0.943 46 H 0.007 0.993 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 12.654 27.346 -2.081 30.203 hybrid contribution -0.966 -0.436 0.605 1.221 sum 11.687 26.910 -1.476 29.375 Atomic orbital electron populations 1.20855 0.87912 1.03853 1.03706 1.22244 0.98543 0.88795 0.91846 1.22107 0.95861 0.99204 1.02510 1.22002 0.94415 0.97769 0.92796 1.19192 0.96318 0.93517 1.04817 1.21703 0.91282 1.00693 0.93332 1.21309 1.02532 0.90704 1.00240 1.21863 0.90729 1.01623 0.92000 1.19879 0.94796 0.90864 1.10255 1.18659 0.87404 0.84452 0.76679 1.90815 1.15498 1.87729 1.49814 1.45744 1.10710 1.04483 1.75136 1.21648 0.95412 0.83241 0.98983 1.21346 0.91814 0.84586 0.98076 0.93002 1.22646 1.00124 0.96681 0.95671 1.22886 0.96927 0.95801 1.01377 1.21300 0.91897 0.94577 0.87514 1.44755 1.50224 1.13361 1.25199 1.19246 1.11816 1.11228 0.94831 0.90930 1.25664 1.00537 0.99420 0.99659 1.70132 1.41008 1.20932 1.27187 0.85266 0.78924 0.76936 0.78930 1.21244 1.21586 1.19727 1.18993 0.89483 0.93013 0.97394 1.68113 1.09493 1.30160 1.13757 0.89614 0.92953 0.87211 0.80837 0.79517 0.80413 0.80466 0.82356 0.74981 0.95059 0.95371 0.91775 0.87181 0.90857 0.89756 0.94272 0.99298 0.94240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.24 10.14 71.23 0.72 -1.51 16 2 C 0.14 3.55 6.78 42.89 0.29 3.85 16 3 C -0.18 -2.88 9.64 22.13 0.21 -2.66 16 4 C -0.04 -0.61 9.90 22.52 0.22 -0.39 16 5 C -0.14 -2.68 5.74 -21.29 -0.12 -2.80 16 6 C -0.05 -0.59 9.75 22.37 0.22 -0.37 16 7 C -0.13 -1.44 9.93 21.98 0.22 -1.22 16 8 C -0.04 -0.75 9.52 22.54 0.21 -0.53 16 9 C -0.15 -4.56 5.91 -19.86 -0.12 -4.68 16 10 C 0.54 20.73 7.76 86.67 0.67 21.41 16 11 O -0.56 -27.75 15.19 -4.03 -0.06 -27.81 16 12 N -0.71 -23.51 5.35 -466.37 -2.50 -26.01 16 13 C 0.13 5.72 5.09 86.38 0.44 6.16 16 14 C 0.15 6.00 3.22 45.34 0.15 6.15 16 15 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 16 C -0.11 -3.51 6.07 31.82 0.19 -3.32 16 17 C -0.13 -4.59 7.10 32.03 0.23 -4.36 16 18 C 0.17 8.59 5.42 86.86 0.47 9.06 16 19 N -0.61 -31.92 3.13 -668.26 -2.09 -34.01 16 20 C -0.24 -14.11 9.73 84.03 0.82 -13.29 16 21 H 0.07 4.15 7.83 -2.91 -0.02 4.13 16 22 C -0.06 -3.50 5.47 84.86 0.46 -3.04 16 23 N -0.94 -58.58 10.54 21.65 0.23 -58.36 16 24 Si 0.97 48.22 29.55 68.60 2.03 50.25 16 25 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 26 H -0.29 -14.27 7.11 99.48 0.71 -13.57 16 27 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 28 C 0.13 4.09 6.61 40.62 0.27 4.36 16 29 N -0.51 -17.86 8.33 -176.10 -1.47 -19.32 16 30 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 31 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 32 H 0.11 1.42 8.07 -2.39 -0.02 1.40 16 33 H 0.17 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 36 H 0.18 0.47 8.06 -2.91 -0.02 0.44 16 37 H 0.16 1.88 6.37 -2.91 -0.02 1.86 16 38 H 0.41 9.72 6.27 -92.70 -0.58 9.14 16 39 H 0.03 1.51 8.03 -2.39 -0.02 1.49 16 40 H 0.03 1.42 7.86 -2.39 -0.02 1.41 16 41 H 0.06 2.02 7.78 -2.39 -0.02 2.00 16 42 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.08 2.54 8.14 -2.38 -0.02 2.52 16 45 H 0.04 2.19 6.86 -2.39 -0.02 2.18 16 46 H -0.01 -0.62 8.08 -2.39 -0.02 -0.64 16 47 H 0.25 14.99 8.31 -92.71 -0.77 14.22 16 Total: -1.00 -91.55 383.74 2.11 -89.44 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: 0.41 Total: 13.01 kcal Atomic # 6 Polarization: 7.24 SS G_CDS: 5.56 Total: 12.81 kcal Atomic # 7 Polarization: -131.87 SS G_CDS: -5.83 Total: -137.70 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.06 Total: -27.81 kcal Atomic # 14 Polarization: 48.22 SS G_CDS: 2.03 Total: 50.25 kcal Total: -91.55 2.11 -89.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027962250.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.185 kcal (2) G-P(sol) polarization free energy of solvation -91.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds