Wall clock time and date at job start Tue Mar 31 2020 22:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39226 * 119.15465 * 2 1 4 4 C 1.36634 * 119.90209 * 180.02562 * 3 2 1 5 5 C 1.40791 * 118.15633 * 359.97438 * 4 3 2 6 6 C 1.40482 * 121.25265 * 180.02562 * 5 4 3 7 7 C 1.36315 * 120.08619 * 180.02562 * 6 5 4 8 8 C 1.38918 * 121.04996 * 359.67923 * 7 6 5 9 9 C 1.38702 * 120.73157 * 0.60688 * 8 7 6 10 10 C 1.47437 * 120.33561 * 179.69300 * 9 8 7 11 11 O 1.21597 * 119.99960 * 179.72327 * 10 9 8 12 12 N 1.34771 * 119.99785 * 359.72581 * 10 9 8 13 13 C 1.46501 * 120.00079 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47178 * 184.87483 * 13 12 10 15 15 H 1.09002 * 109.99836 * 304.38212 * 14 13 12 16 16 C 1.54329 * 109.88041 * 65.47312 * 14 13 12 17 17 C 1.55157 * 102.94232 * 141.61021 * 16 14 13 18 18 C 1.54909 * 101.57841 * 324.49694 * 17 16 14 19 19 N 1.47018 * 109.88297 * 183.28121 * 14 13 12 20 20 C 1.36937 * 125.64763 * 61.68879 * 19 14 13 21 21 H 1.07992 * 120.00097 * 14.66771 * 20 19 14 22 22 C 1.38813 * 119.99552 * 194.66564 * 20 19 14 23 23 N 1.31615 * 120.00343 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99635 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47017 * 60.00220 * 24 22 20 26 26 H 1.48497 * 109.47026 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47052 * 300.00133 * 24 22 20 28 28 C 1.41552 * 118.94820 * 0.02562 * 5 4 3 29 29 N 1.31237 * 119.15171 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46656 * 269.97732 * 1 2 3 31 31 H 1.08999 * 109.46742 * 29.97632 * 1 2 3 32 32 H 1.09001 * 109.46989 * 149.98283 * 1 2 3 33 33 H 1.07997 * 120.04992 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.92046 * 180.02562 * 4 3 2 35 35 H 1.07999 * 119.96035 * 0.02562 * 6 5 4 36 36 H 1.08003 * 119.47563 * 179.97438 * 7 6 5 37 37 H 1.08004 * 119.63184 * 180.29751 * 8 7 6 38 38 H 0.97011 * 120.00185 * 0.02562 * 12 10 9 39 39 H 1.08999 * 109.46677 * 64.88442 * 13 12 10 40 40 H 1.08997 * 109.47254 * 304.87981 * 13 12 10 41 41 H 1.08998 * 110.71959 * 23.24256 * 16 14 13 42 42 H 1.08997 * 110.71653 * 259.97205 * 16 14 13 43 43 H 1.09000 * 111.00652 * 82.57105 * 17 16 14 44 44 H 1.09000 * 111.00269 * 206.42467 * 17 16 14 45 45 H 1.08999 * 110.36513 * 155.84770 * 18 17 16 46 46 H 1.08998 * 110.37298 * 278.05785 * 18 17 16 47 47 H 0.97006 * 120.00055 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2337 -0.0005 5 6 4.2320 0.0012 -0.0005 6 6 5.6356 -0.0564 -0.0005 7 6 6.2701 -1.2629 -0.0010 8 6 5.5502 -2.4510 0.0051 9 6 4.1632 -2.4394 -0.0007 10 6 3.4080 -3.7057 -0.0009 11 8 2.1921 -3.6884 -0.0010 12 7 4.0652 -4.8822 -0.0011 13 6 3.3148 -6.1405 -0.0007 14 6 4.2880 -7.3147 0.1216 15 1 5.0309 -7.2677 -0.6747 16 6 4.9887 -7.2746 1.4961 17 6 5.0690 -8.7734 1.8891 18 6 3.7403 -9.3186 1.3087 19 7 3.5515 -8.5847 0.0441 20 6 2.8133 -9.0151 -1.0260 21 1 2.9220 -8.5327 -1.9860 22 6 1.9252 -10.0715 -0.8765 23 7 1.7924 -10.6591 0.2937 24 14 0.9175 -10.6581 -2.3360 25 1 1.8295 -11.1065 -3.4189 26 1 0.0527 -11.7904 -1.9173 27 1 0.0700 -9.5443 -2.8321 28 6 3.4788 -1.1973 -0.0005 29 7 2.1463 -1.1461 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6324 2.1436 -0.0004 34 1 4.0943 2.1674 -0.0001 35 1 6.2129 0.8564 -0.0001 36 1 7.3496 -1.2957 -0.0014 37 1 6.0764 -3.3942 0.0095 38 1 5.0352 -4.8960 -0.0006 39 1 2.7538 -6.2291 -0.9311 40 1 2.6243 -6.1515 0.8425 41 1 4.3907 -6.7181 2.2177 42 1 5.9866 -6.8451 1.4078 43 1 5.9270 -9.2549 1.4201 44 1 5.1001 -8.8921 2.9722 45 1 3.8206 -10.3888 1.1178 46 1 2.9162 -9.1169 1.9930 47 1 1.1715 -11.3970 0.3982 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027962251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:48 Heat of formation + Delta-G solvation = 47.830593 kcal Electronic energy + Delta-G solvation = -28679.447573 eV Core-core repulsion = 24827.753892 eV Total energy + Delta-G solvation = -3851.693681 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.15716 -39.17463 -37.63141 -37.20608 -34.16248 -33.62038 -32.46303 -32.12121 -30.69859 -29.50777 -28.45746 -28.02529 -25.02475 -24.26397 -24.06569 -22.71297 -22.61296 -20.42136 -20.02997 -19.48377 -18.29482 -17.90168 -16.68900 -16.61182 -16.01398 -15.53047 -15.13538 -14.98057 -14.75108 -14.49007 -14.32963 -14.03797 -13.81422 -13.72325 -13.25402 -13.07100 -12.96865 -12.79185 -12.37947 -12.22980 -12.05213 -11.85487 -11.71227 -11.58711 -11.52520 -11.25785 -10.91420 -10.74446 -10.67052 -10.19511 -10.10064 -9.94434 -9.83353 -9.76647 -9.67051 -9.10603 -8.92127 -8.61697 -8.54633 -8.35918 -6.80694 -5.73660 -3.10155 -0.02866 0.58869 1.59067 2.55905 3.37270 3.41421 3.46720 3.48061 3.50188 4.00619 4.04179 4.31755 4.42244 4.51373 4.56042 4.61235 4.79331 4.86219 5.03380 5.13691 5.31058 5.36845 5.43882 5.45784 5.49063 5.56186 5.63725 5.66256 5.69353 5.81921 5.84360 5.90543 5.95732 6.07762 6.11197 6.17754 6.27865 6.29083 6.49252 6.56617 6.59903 6.66665 6.78165 6.88487 7.12006 7.54153 7.64074 7.81823 7.85713 7.96852 8.28872 8.65736 9.20608 9.81202 10.48661 11.38388 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.002733 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.029469 B =10240.876456 C =11528.575866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.157 3.843 3 C -0.172 4.172 4 C -0.059 4.059 5 C -0.117 4.117 6 C -0.075 4.075 7 C -0.127 4.127 8 C -0.066 4.066 9 C -0.101 4.101 10 C 0.544 3.456 11 O -0.499 6.499 12 N -0.723 5.723 13 C 0.112 3.888 14 C 0.152 3.848 15 H 0.037 0.963 16 C -0.126 4.126 17 C -0.149 4.149 18 C 0.172 3.828 19 N -0.588 5.588 20 C -0.234 4.234 21 H 0.075 0.925 22 C -0.001 4.001 23 N -0.916 5.916 24 Si 0.910 3.090 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.167 3.833 29 N -0.436 5.436 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.391 0.609 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.026 0.974 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.476 24.598 1.816 26.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.004 3.996 3 C -0.192 4.192 4 C -0.084 4.084 5 C -0.119 4.119 6 C -0.094 4.094 7 C -0.145 4.145 8 C -0.087 4.087 9 C -0.105 4.105 10 C 0.329 3.671 11 O -0.373 6.373 12 N -0.376 5.376 13 C -0.013 4.013 14 C 0.043 3.957 15 H 0.054 0.946 16 C -0.164 4.164 17 C -0.187 4.187 18 C 0.048 3.952 19 N -0.313 5.313 20 C -0.362 4.362 21 H 0.093 0.907 22 C -0.198 4.198 23 N -0.562 5.562 24 Si 0.740 3.260 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.209 1.209 28 C 0.043 3.957 29 N -0.144 5.144 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.155 0.845 34 H 0.157 0.843 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.225 0.775 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.044 0.956 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.984 23.494 1.775 24.877 hybrid contribution 0.427 0.563 -0.717 1.007 sum 8.411 24.057 1.057 25.507 Atomic orbital electron populations 1.20796 0.88543 1.03769 1.03395 1.21734 0.97613 0.88027 0.92197 1.21782 0.95070 0.99388 1.02948 1.21427 0.94483 0.96959 0.95567 1.18824 0.94797 0.94002 1.04296 1.21117 0.92541 0.98634 0.97102 1.20827 1.00567 0.91927 1.01137 1.21482 0.92599 0.99186 0.95390 1.20093 0.93186 0.92885 1.04351 1.17926 0.87715 0.83032 0.78464 1.90860 1.12684 1.86806 1.46973 1.46087 1.09971 1.06188 1.75384 1.22208 0.95639 0.80863 1.02557 1.21131 0.92725 0.86795 0.95003 0.94560 1.22610 0.99018 0.97597 0.97194 1.23005 1.00943 0.95354 0.99420 1.21446 0.90422 0.97156 0.86205 1.44469 1.57933 1.13799 1.15073 1.18937 1.15189 1.13948 0.88156 0.90707 1.24910 0.98464 0.99550 0.96886 1.69926 1.38989 1.25367 1.21906 0.86231 0.80097 0.78065 0.81577 1.21090 1.21572 1.20913 1.18613 0.89387 0.91381 0.96284 1.68201 1.07749 1.27653 1.10755 0.90080 0.90705 0.89770 0.84538 0.84278 0.85015 0.84838 0.84673 0.77513 0.91498 0.91586 0.91793 0.92477 0.92326 0.92373 0.91007 0.95601 0.93566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.15 36.01 0.37 -0.69 16 2 C 0.16 1.95 6.78 -82.48 -0.56 1.39 16 3 C -0.17 -1.58 9.64 -39.79 -0.38 -1.96 16 4 C -0.06 -0.51 9.89 -39.20 -0.39 -0.90 16 5 C -0.12 -1.30 5.74 -106.82 -0.61 -1.92 16 6 C -0.07 -0.62 9.75 -39.43 -0.38 -1.01 16 7 C -0.13 -1.03 9.93 -40.02 -0.40 -1.42 16 8 C -0.07 -0.68 9.52 -39.16 -0.37 -1.05 16 9 C -0.10 -1.48 5.91 -104.61 -0.62 -2.09 16 10 C 0.54 9.76 7.76 -12.52 -0.10 9.66 16 11 O -0.50 -11.13 15.18 5.28 0.08 -11.05 16 12 N -0.72 -11.73 5.29 -61.38 -0.32 -12.05 16 13 C 0.11 2.27 5.08 -4.04 -0.02 2.25 16 14 C 0.15 3.05 3.21 -66.95 -0.21 2.84 16 15 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 16 C -0.13 -2.13 6.14 -24.89 -0.15 -2.29 16 17 C -0.15 -2.75 7.09 -24.58 -0.17 -2.92 16 18 C 0.17 4.16 5.41 -2.53 -0.01 4.15 16 19 N -0.59 -14.81 3.13 -162.57 -0.51 -15.32 16 20 C -0.23 -6.50 9.74 -15.06 -0.15 -6.65 16 21 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 22 C 0.00 -0.02 5.47 -17.43 -0.10 -0.12 16 23 N -0.92 -26.98 10.58 55.49 0.59 -26.40 16 24 Si 0.91 22.43 29.55 -169.99 -5.02 17.41 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 27 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 28 C 0.17 2.49 6.61 -84.58 -0.56 1.93 16 29 N -0.44 -7.13 8.33 -7.01 -0.06 -7.18 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 32 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 34 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 35 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 36 H 0.13 0.67 8.06 -52.48 -0.42 0.24 16 37 H 0.14 1.07 6.37 -52.48 -0.33 0.73 16 38 H 0.39 4.94 6.38 -40.82 -0.26 4.67 16 39 H 0.07 1.53 7.90 -51.93 -0.41 1.12 16 40 H 0.07 1.49 8.06 -51.93 -0.42 1.08 16 41 H 0.06 1.09 7.80 -51.93 -0.40 0.69 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.07 1.92 6.93 -51.93 -0.36 1.56 16 46 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 47 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 383.99 15.07 5.79 5.79 Total: -1.00 -35.78 383.99 -11.09 -46.86 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -6.80 Total: 2.75 kcal Atomic # 6 Polarization: 4.02 SS G_CDS: -4.83 Total: -0.80 kcal Atomic # 7 Polarization: -60.65 SS G_CDS: -0.30 Total: -60.96 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.78 -11.09 -46.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027962251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.692 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds