Wall clock time and date at job start Tue Mar 31 2020 22:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39226 * 119.15465 * 2 1 4 4 C 1.36634 * 119.90209 * 180.02562 * 3 2 1 5 5 C 1.40791 * 118.15633 * 359.97438 * 4 3 2 6 6 C 1.40482 * 121.25265 * 180.02562 * 5 4 3 7 7 C 1.36315 * 120.08619 * 180.02562 * 6 5 4 8 8 C 1.38918 * 121.04996 * 359.67923 * 7 6 5 9 9 C 1.38702 * 120.73157 * 0.60688 * 8 7 6 10 10 C 1.47437 * 120.33561 * 179.69300 * 9 8 7 11 11 O 1.21597 * 119.99960 * 179.72327 * 10 9 8 12 12 N 1.34771 * 119.99785 * 359.72581 * 10 9 8 13 13 C 1.46501 * 120.00079 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47178 * 184.87483 * 13 12 10 15 15 H 1.09002 * 109.99836 * 304.38212 * 14 13 12 16 16 C 1.54329 * 109.88041 * 65.47312 * 14 13 12 17 17 C 1.55157 * 102.94232 * 141.61021 * 16 14 13 18 18 C 1.54909 * 101.57841 * 324.49694 * 17 16 14 19 19 N 1.47018 * 109.88297 * 183.28121 * 14 13 12 20 20 C 1.36937 * 125.64763 * 61.68879 * 19 14 13 21 21 H 1.07992 * 120.00097 * 14.66771 * 20 19 14 22 22 C 1.38813 * 119.99552 * 194.66564 * 20 19 14 23 23 N 1.31615 * 120.00343 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99635 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.47017 * 60.00220 * 24 22 20 26 26 H 1.48497 * 109.47026 * 179.97438 * 24 22 20 27 27 H 1.48496 * 109.47052 * 300.00133 * 24 22 20 28 28 C 1.41552 * 118.94820 * 0.02562 * 5 4 3 29 29 N 1.31237 * 119.15171 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46656 * 269.97732 * 1 2 3 31 31 H 1.08999 * 109.46742 * 29.97632 * 1 2 3 32 32 H 1.09001 * 109.46989 * 149.98283 * 1 2 3 33 33 H 1.07997 * 120.04992 * 359.97438 * 3 2 1 34 34 H 1.08003 * 120.92046 * 180.02562 * 4 3 2 35 35 H 1.07999 * 119.96035 * 0.02562 * 6 5 4 36 36 H 1.08003 * 119.47563 * 179.97438 * 7 6 5 37 37 H 1.08004 * 119.63184 * 180.29751 * 8 7 6 38 38 H 0.97011 * 120.00185 * 0.02562 * 12 10 9 39 39 H 1.08999 * 109.46677 * 64.88442 * 13 12 10 40 40 H 1.08997 * 109.47254 * 304.87981 * 13 12 10 41 41 H 1.08998 * 110.71959 * 23.24256 * 16 14 13 42 42 H 1.08997 * 110.71653 * 259.97205 * 16 14 13 43 43 H 1.09000 * 111.00652 * 82.57105 * 17 16 14 44 44 H 1.09000 * 111.00269 * 206.42467 * 17 16 14 45 45 H 1.08999 * 110.36513 * 155.84770 * 18 17 16 46 46 H 1.08998 * 110.37298 * 278.05785 * 18 17 16 47 47 H 0.97006 * 120.00055 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1853 1.2159 0.0000 4 6 3.5515 1.2337 -0.0005 5 6 4.2320 0.0012 -0.0005 6 6 5.6356 -0.0564 -0.0005 7 6 6.2701 -1.2629 -0.0010 8 6 5.5502 -2.4510 0.0051 9 6 4.1632 -2.4394 -0.0007 10 6 3.4080 -3.7057 -0.0009 11 8 2.1921 -3.6884 -0.0010 12 7 4.0652 -4.8822 -0.0011 13 6 3.3148 -6.1405 -0.0007 14 6 4.2880 -7.3147 0.1216 15 1 5.0309 -7.2677 -0.6747 16 6 4.9887 -7.2746 1.4961 17 6 5.0690 -8.7734 1.8891 18 6 3.7403 -9.3186 1.3087 19 7 3.5515 -8.5847 0.0441 20 6 2.8133 -9.0151 -1.0260 21 1 2.9220 -8.5327 -1.9860 22 6 1.9252 -10.0715 -0.8765 23 7 1.7924 -10.6591 0.2937 24 14 0.9175 -10.6581 -2.3360 25 1 1.8295 -11.1065 -3.4189 26 1 0.0527 -11.7904 -1.9173 27 1 0.0700 -9.5443 -2.8321 28 6 3.4788 -1.1973 -0.0005 29 7 2.1463 -1.1461 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6324 2.1436 -0.0004 34 1 4.0943 2.1674 -0.0001 35 1 6.2129 0.8564 -0.0001 36 1 7.3496 -1.2957 -0.0014 37 1 6.0764 -3.3942 0.0095 38 1 5.0352 -4.8960 -0.0006 39 1 2.7538 -6.2291 -0.9311 40 1 2.6243 -6.1515 0.8425 41 1 4.3907 -6.7181 2.2177 42 1 5.9866 -6.8451 1.4078 43 1 5.9270 -9.2549 1.4201 44 1 5.1001 -8.8921 2.9722 45 1 3.8206 -10.3888 1.1178 46 1 2.9162 -9.1169 1.9930 47 1 1.1715 -11.3970 0.3982 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027962251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:27:47 Heat of formation + Delta-G solvation = 23.656702 kcal Electronic energy + Delta-G solvation = -28680.495831 eV Core-core repulsion = 24827.753892 eV Total energy + Delta-G solvation = -3852.741940 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.00437 -40.52291 -39.22345 -38.11142 -35.75021 -34.50281 -34.35621 -32.91952 -31.78570 -31.25024 -29.98440 -28.83643 -26.79435 -25.91001 -24.89777 -23.89287 -23.37799 -22.05563 -21.44229 -21.08432 -19.17005 -19.05453 -18.46857 -17.60666 -17.05679 -17.02523 -16.46093 -16.37874 -15.86799 -15.70353 -15.65972 -15.54276 -14.91577 -14.72512 -14.61601 -14.03558 -14.00843 -13.84611 -13.77196 -13.66441 -13.40004 -13.11647 -13.01586 -12.95145 -12.87978 -12.67293 -12.29432 -12.28402 -12.07592 -11.88189 -11.73840 -11.50909 -11.47287 -11.41437 -11.09231 -10.69597 -10.11364 -10.08751 -9.67431 -9.24010 -8.87926 -7.90605 -5.28212 -0.81110 -0.16713 0.77246 1.41301 1.45634 1.50961 1.79128 2.11743 2.22631 2.48064 3.14951 3.24605 3.28896 3.54536 3.69687 3.73885 3.85541 3.92652 3.96749 3.98634 4.00531 4.20252 4.24800 4.37716 4.42680 4.45377 4.52468 4.64735 4.69296 4.71607 4.73763 4.94923 4.95628 4.97991 5.00449 5.08505 5.13031 5.15918 5.20523 5.23899 5.36457 5.38072 5.44650 5.55889 5.61519 5.65151 5.76490 5.86890 6.21183 6.61992 7.07158 7.12779 7.34205 7.74179 8.40069 9.20231 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.014217 B = 0.002733 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1969.029469 B =10240.876456 C =11528.575866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.137 3.863 3 C -0.177 4.177 4 C -0.045 4.045 5 C -0.136 4.136 6 C -0.052 4.052 7 C -0.130 4.130 8 C -0.042 4.042 9 C -0.154 4.154 10 C 0.540 3.460 11 O -0.560 6.560 12 N -0.706 5.706 13 C 0.134 3.866 14 C 0.149 3.851 15 H 0.055 0.945 16 C -0.113 4.113 17 C -0.132 4.132 18 C 0.173 3.827 19 N -0.611 5.611 20 C -0.242 4.242 21 H 0.075 0.925 22 C -0.059 4.059 23 N -0.945 5.945 24 Si 0.972 3.028 25 H -0.271 1.271 26 H -0.291 1.291 27 H -0.285 1.285 28 C 0.134 3.866 29 N -0.506 5.506 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.051 0.949 33 H 0.174 0.826 34 H 0.188 0.812 35 H 0.178 0.822 36 H 0.178 0.822 37 H 0.159 0.841 38 H 0.412 0.588 39 H 0.028 0.972 40 H 0.030 0.970 41 H 0.060 0.940 42 H 0.109 0.891 43 H 0.074 0.926 44 H 0.082 0.918 45 H 0.037 0.963 46 H -0.012 1.012 47 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.905 28.546 1.655 31.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.014 4.014 3 C -0.197 4.197 4 C -0.070 4.070 5 C -0.138 4.138 6 C -0.070 4.070 7 C -0.148 4.148 8 C -0.062 4.062 9 C -0.158 4.158 10 C 0.328 3.672 11 O -0.439 6.439 12 N -0.360 5.360 13 C 0.007 3.993 14 C 0.042 3.958 15 H 0.073 0.927 16 C -0.150 4.150 17 C -0.170 4.170 18 C 0.048 3.952 19 N -0.335 5.335 20 C -0.371 4.371 21 H 0.093 0.907 22 C -0.253 4.253 23 N -0.593 5.593 24 Si 0.800 3.200 25 H -0.196 1.196 26 H -0.217 1.217 27 H -0.212 1.212 28 C 0.011 3.989 29 N -0.215 5.215 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.071 0.929 33 H 0.192 0.808 34 H 0.205 0.795 35 H 0.196 0.804 36 H 0.195 0.805 37 H 0.176 0.824 38 H 0.250 0.750 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.078 0.922 42 H 0.128 0.872 43 H 0.093 0.907 44 H 0.101 0.899 45 H 0.056 0.944 46 H 0.006 0.994 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 12.485 27.475 1.608 30.221 hybrid contribution -0.891 -0.500 -0.672 1.222 sum 11.594 26.975 0.936 29.376 Atomic orbital electron populations 1.20857 0.87909 1.03854 1.03703 1.22243 0.98545 0.88794 0.91850 1.22104 0.95859 0.99207 1.02511 1.22001 0.94419 0.97769 0.92798 1.19190 0.96314 0.93521 1.04819 1.21703 0.91285 1.00689 0.93343 1.21311 1.02524 0.90711 1.00245 1.21862 0.90735 1.01614 0.91998 1.19876 0.94786 0.90865 1.10242 1.18648 0.87394 0.84435 0.76679 1.90815 1.15498 1.87726 1.49830 1.45739 1.10706 1.04479 1.75120 1.21641 0.95369 0.83233 0.99009 1.21349 0.92240 0.84258 0.97945 0.92696 1.22604 1.01191 0.96765 0.94472 1.22868 0.97547 0.95878 1.00716 1.21273 0.92679 0.95601 0.85635 1.44749 1.57917 1.16205 1.14631 1.19259 1.15184 1.13514 0.89188 0.90722 1.25696 0.99946 1.00258 0.99429 1.70133 1.39672 1.25830 1.23668 0.85259 0.78614 0.77177 0.78955 1.19647 1.21722 1.21160 1.18995 0.89482 0.93011 0.97392 1.68117 1.09491 1.30148 1.13756 0.89630 0.87205 0.92943 0.80841 0.79525 0.80427 0.80483 0.82362 0.74988 0.95370 0.95139 0.92158 0.87240 0.90719 0.89916 0.94419 0.99352 0.94261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.23 10.15 71.24 0.72 -1.51 16 2 C 0.14 3.54 6.78 42.89 0.29 3.84 16 3 C -0.18 -2.87 9.64 22.13 0.21 -2.66 16 4 C -0.04 -0.61 9.89 22.52 0.22 -0.39 16 5 C -0.14 -2.67 5.74 -21.29 -0.12 -2.79 16 6 C -0.05 -0.59 9.75 22.37 0.22 -0.37 16 7 C -0.13 -1.44 9.93 21.98 0.22 -1.22 16 8 C -0.04 -0.75 9.52 22.54 0.21 -0.53 16 9 C -0.15 -4.54 5.91 -19.86 -0.12 -4.66 16 10 C 0.54 20.68 7.76 86.67 0.67 21.36 16 11 O -0.56 -27.69 15.18 -4.02 -0.06 -27.75 16 12 N -0.71 -23.45 5.29 -466.37 -2.47 -25.92 16 13 C 0.13 5.74 5.08 86.38 0.44 6.17 16 14 C 0.15 6.00 3.21 45.34 0.15 6.15 16 15 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 16 C -0.11 -3.55 6.14 31.78 0.20 -3.35 16 17 C -0.13 -4.64 7.09 31.99 0.23 -4.42 16 18 C 0.17 8.68 5.41 86.85 0.47 9.15 16 19 N -0.61 -31.84 3.13 -668.26 -2.09 -33.93 16 20 C -0.24 -14.04 9.74 84.03 0.82 -13.22 16 21 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 22 C -0.06 -3.52 5.47 84.86 0.46 -3.06 16 23 N -0.95 -58.70 10.58 21.65 0.23 -58.47 16 24 Si 0.97 47.98 29.55 68.60 2.03 50.00 16 25 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 26 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 C 0.13 4.09 6.61 40.62 0.27 4.36 16 29 N -0.51 -17.81 8.33 -176.09 -1.47 -19.28 16 30 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.11 1.41 8.07 -2.39 -0.02 1.39 16 32 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.17 1.36 8.06 -2.91 -0.02 1.33 16 34 H 0.19 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.18 0.39 8.06 -2.91 -0.02 0.37 16 36 H 0.18 0.47 8.06 -2.91 -0.02 0.45 16 37 H 0.16 1.88 6.37 -2.91 -0.02 1.86 16 38 H 0.41 9.72 6.38 -92.70 -0.59 9.13 16 39 H 0.03 1.40 7.90 -2.39 -0.02 1.38 16 40 H 0.03 1.50 8.06 -2.39 -0.02 1.48 16 41 H 0.06 1.97 7.80 -2.39 -0.02 1.95 16 42 H 0.11 2.39 8.14 -2.39 -0.02 2.38 16 43 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 45 H 0.04 2.11 6.93 -2.39 -0.02 2.09 16 46 H -0.01 -0.65 8.06 -2.39 -0.02 -0.67 16 47 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 Total: -1.00 -91.32 383.99 2.13 -89.19 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.40 Total: 13.30 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 5.56 Total: 12.86 kcal Atomic # 7 Polarization: -131.81 SS G_CDS: -5.80 Total: -137.60 kcal Atomic # 8 Polarization: -27.69 SS G_CDS: -0.06 Total: -27.75 kcal Atomic # 14 Polarization: 47.98 SS G_CDS: 2.03 Total: 50.00 kcal Total: -91.32 2.13 -89.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027962251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.851 kcal (2) G-P(sol) polarization free energy of solvation -91.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds