Wall clock time and date at job start Tue Mar 31 2020 22:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39436 * 119.54260 * 2 1 4 4 C 1.35999 * 121.08987 * 180.02562 * 3 2 1 5 5 C 1.40823 * 119.73140 * 359.95717 * 4 3 2 6 6 N 1.33274 * 120.98982 * 180.29714 * 5 4 3 7 7 C 1.31881 * 121.29970 * 180.25693 * 6 5 4 8 8 C 1.48273 * 119.23867 * 179.76009 * 7 6 5 9 9 O 1.21499 * 119.99959 * 179.72674 * 8 7 6 10 10 N 1.34773 * 119.99994 * 359.45867 * 8 7 6 11 11 C 1.46509 * 120.00222 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47060 * 185.94340 * 11 10 8 13 13 H 1.08997 * 109.87607 * 300.87851 * 12 11 10 14 14 C 1.54323 * 109.88122 * 179.86215 * 12 11 10 15 15 C 1.55153 * 102.94749 * 218.39131 * 14 12 11 16 16 C 1.54911 * 101.57870 * 35.50038 * 15 14 12 17 17 N 1.47026 * 109.88464 * 62.05773 * 12 11 10 18 18 C 1.36931 * 125.64708 * 298.33490 * 17 12 11 19 19 H 1.08008 * 120.00169 * 335.96802 * 18 17 12 20 20 C 1.38811 * 120.00301 * 155.96724 * 18 17 12 21 21 N 1.31619 * 120.00243 * 159.46944 * 20 18 17 22 22 Si 1.86801 * 119.99907 * 339.46696 * 20 18 17 23 23 H 1.48501 * 109.47121 * 84.66591 * 22 20 18 24 24 H 1.48502 * 109.47181 * 204.66806 * 22 20 18 25 25 H 1.48500 * 109.47236 * 324.66535 * 22 20 18 26 26 C 1.40274 * 121.52247 * 359.48477 * 7 6 5 27 27 C 1.36515 * 119.81325 * 0.25483 * 26 7 6 28 28 C 1.40748 * 118.24231 * 359.97438 * 27 26 7 29 29 C 1.36135 * 119.54664 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.46958 * 270.01787 * 1 2 3 31 31 H 1.09000 * 109.47307 * 30.02068 * 1 2 3 32 32 H 1.09004 * 109.47157 * 150.02441 * 1 2 3 33 33 H 1.08007 * 119.45714 * 359.97438 * 3 2 1 34 34 H 1.07999 * 120.13248 * 180.02562 * 4 3 2 35 35 H 0.97001 * 120.00256 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.46836 * 305.94686 * 11 10 8 37 37 H 1.09002 * 109.46649 * 65.94571 * 11 10 8 38 38 H 1.09003 * 110.72264 * 336.75660 * 14 12 11 39 39 H 1.09002 * 110.72223 * 100.02278 * 14 12 11 40 40 H 1.08994 * 111.01161 * 153.57312 * 15 14 12 41 41 H 1.08993 * 111.00374 * 277.43070 * 15 14 12 42 42 H 1.09003 * 110.36457 * 81.83015 * 16 15 14 43 43 H 1.09004 * 110.36772 * 204.04303 * 16 15 14 44 44 H 0.97000 * 120.00197 * 179.97438 * 21 20 18 45 45 H 1.08000 * 120.09545 * 180.27304 * 26 7 6 46 46 H 1.07997 * 120.87802 * 179.97438 * 27 26 7 47 47 H 1.08000 * 120.17445 * 0.04040 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1945 1.2131 0.0000 4 6 3.5540 1.2498 -0.0005 5 6 4.2851 0.0463 -0.0002 6 7 5.6178 0.0530 0.0053 7 6 6.3087 -1.0704 0.0006 8 6 7.7902 -1.0096 0.0016 9 8 8.4403 -2.0360 0.0023 10 7 8.4156 0.1842 -0.0038 11 6 9.8794 0.2444 -0.0023 12 6 10.3299 1.6996 0.1401 13 1 9.9336 2.2925 -0.6842 14 6 11.8713 1.7736 0.1462 15 6 12.1622 2.8767 1.1978 16 6 11.0343 2.6275 2.2300 17 7 9.8616 2.2448 1.4227 18 6 8.5531 2.3758 1.8041 19 1 7.7769 2.4454 1.0561 20 6 8.2238 2.4190 3.1519 21 7 7.0749 2.9361 3.5324 22 14 9.4116 1.7434 4.4256 23 1 10.4092 2.7865 4.7746 24 1 8.6595 1.3501 5.6442 25 1 10.1101 0.5563 3.8705 26 6 5.6743 -2.3215 0.0005 27 6 4.3109 -2.3912 0.0000 28 6 3.5825 -1.1869 0.0002 29 6 2.1783 -1.1843 0.0005 30 1 -0.3633 0.0003 1.0277 31 1 -0.3634 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5135 33 1 1.6382 2.1389 -0.0004 34 1 4.0707 2.1981 -0.0001 35 1 7.8966 1.0037 -0.0087 36 1 10.2661 -0.3392 0.8332 37 1 10.2608 -0.1641 -0.9382 38 1 12.3020 0.8216 0.4569 39 1 12.2473 2.0664 -0.8341 40 1 13.1438 2.7363 1.6502 41 1 12.0755 3.8696 0.7565 42 1 11.3104 1.8178 2.9055 43 1 10.8282 3.5374 2.7938 44 1 6.8447 2.9660 4.4743 45 1 6.2628 -3.2271 0.0010 46 1 3.8047 -3.3452 -0.0005 47 1 1.6338 -2.1170 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028016467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:59 Heat of formation + Delta-G solvation = 43.319947 kcal Electronic energy + Delta-G solvation = -29349.689990 eV Core-core repulsion = 25497.800713 eV Total energy + Delta-G solvation = -3851.889278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.169 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.84919 -39.17434 -37.95894 -37.02340 -34.08322 -33.36661 -32.61325 -32.09638 -30.17293 -29.95864 -29.45833 -27.40705 -25.08033 -24.24743 -23.80385 -22.79243 -21.97138 -21.10751 -19.99781 -19.58712 -17.96947 -17.62347 -16.72280 -16.69028 -15.77277 -15.28201 -15.20213 -15.02219 -14.82373 -14.29617 -14.16529 -14.08960 -13.72379 -13.44374 -13.32515 -13.06770 -13.01915 -12.90689 -12.58688 -12.50547 -12.43054 -11.66638 -11.50490 -11.40199 -11.31935 -11.18135 -11.09930 -10.91002 -10.70569 -10.50036 -10.49537 -10.03719 -9.95251 -9.87158 -9.44475 -9.19558 -8.68643 -8.63226 -8.32516 -8.10567 -7.02630 -5.95211 -3.29037 0.34092 0.78507 2.04683 2.62242 3.35320 3.49467 3.51633 3.53900 3.67166 4.28064 4.33251 4.55342 4.58322 4.72465 4.77720 4.91147 4.99834 5.04716 5.16591 5.22551 5.27964 5.31097 5.42078 5.42337 5.47886 5.53030 5.59054 5.73041 5.82718 5.86004 5.93507 6.00730 6.07147 6.10334 6.12541 6.15601 6.26514 6.30702 6.36482 6.40027 6.49487 6.58434 6.66542 6.78824 6.85248 6.87860 7.09600 7.72384 7.87521 8.23476 8.32760 8.73791 8.84219 9.68247 10.18391 11.19960 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.013244 B = 0.003584 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.713111 B = 7810.676863 C = 8811.283130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 C -0.111 4.111 4 C -0.066 4.066 5 C 0.123 3.877 6 N -0.422 5.422 7 C 0.119 3.881 8 C 0.562 3.438 9 O -0.556 6.556 10 N -0.676 5.676 11 C 0.111 3.889 12 C 0.145 3.855 13 H 0.050 0.950 14 C -0.123 4.123 15 C -0.131 4.131 16 C 0.112 3.888 17 N -0.601 5.601 18 C -0.240 4.240 19 H 0.093 0.907 20 C 0.033 3.967 21 N -0.901 5.901 22 Si 0.879 3.121 23 H -0.286 1.286 24 H -0.305 1.305 25 H -0.276 1.276 26 C -0.123 4.123 27 C -0.073 4.073 28 C -0.084 4.084 29 C -0.111 4.111 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.130 0.870 34 H 0.144 0.856 35 H 0.421 0.579 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.023 0.977 43 H 0.057 0.943 44 H 0.262 0.738 45 H 0.147 0.853 46 H 0.141 0.859 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.291 -5.756 -9.512 13.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.076 4.076 3 C -0.131 4.131 4 C -0.085 4.085 5 C -0.001 4.001 6 N -0.133 5.133 7 C -0.035 4.035 8 C 0.346 3.654 9 O -0.435 6.435 10 N -0.328 5.328 11 C -0.015 4.015 12 C 0.037 3.963 13 H 0.068 0.932 14 C -0.161 4.161 15 C -0.169 4.169 16 C -0.013 4.013 17 N -0.327 5.327 18 C -0.368 4.368 19 H 0.110 0.890 20 C -0.167 4.167 21 N -0.543 5.543 22 Si 0.710 3.290 23 H -0.213 1.213 24 H -0.233 1.233 25 H -0.202 1.202 26 C -0.144 4.144 27 C -0.099 4.099 28 C -0.086 4.086 29 C -0.130 4.130 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.148 0.852 34 H 0.162 0.838 35 H 0.262 0.738 36 H 0.083 0.917 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.040 0.960 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.165 0.835 46 H 0.159 0.841 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.647 -5.509 -9.340 12.719 hybrid contribution -0.072 -0.911 1.157 1.474 sum -6.719 -6.420 -8.183 12.383 Atomic orbital electron populations 1.20839 0.90949 1.02842 1.02547 1.19727 0.96343 0.93086 0.98456 1.20794 0.94002 0.97719 1.00556 1.21007 0.93497 0.97424 0.96551 1.18880 0.88993 0.92872 0.99345 1.67925 1.07304 1.29638 1.08399 1.21428 0.94718 0.89368 0.97982 1.17886 0.85616 0.84346 0.77563 1.90705 1.66055 1.34334 1.52377 1.45979 1.07904 1.08871 1.70010 1.22028 0.79775 0.99270 1.00416 1.21336 0.92814 0.91143 0.90995 0.93191 1.22518 0.95151 0.99268 0.99205 1.22717 0.98248 0.98685 0.97268 1.21930 0.87426 0.98047 0.93853 1.44894 1.02068 1.71014 1.14721 1.18457 0.80961 1.45336 0.91998 0.88976 1.25059 0.95677 0.99148 0.96802 1.69808 1.23284 1.45255 1.16003 0.87002 0.80469 0.80218 0.81331 1.21259 1.23259 1.20208 1.21728 0.95015 0.98895 0.98725 1.21356 0.93670 0.97583 0.97284 1.18932 0.94759 0.94043 1.00896 1.20751 0.92122 0.98085 1.02036 0.90907 0.91302 0.91523 0.85213 0.83836 0.73794 0.91681 0.92646 0.91369 0.91278 0.91752 0.91226 0.95973 0.92432 0.92839 0.83493 0.84088 0.85438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 9.98 36.00 0.36 -0.52 16 2 C -0.08 -0.84 5.85 -104.93 -0.61 -1.45 16 3 C -0.11 -1.36 9.58 -39.94 -0.38 -1.74 16 4 C -0.07 -1.02 9.99 -39.41 -0.39 -1.41 16 5 C 0.12 2.11 6.61 -84.85 -0.56 1.55 16 6 N -0.42 -8.20 9.47 -7.54 -0.07 -8.27 16 7 C 0.12 2.27 6.75 -82.95 -0.56 1.71 16 8 C 0.56 11.70 7.81 -12.14 -0.09 11.61 16 9 O -0.56 -12.28 16.27 5.37 0.09 -12.19 16 10 N -0.68 -13.99 4.80 -61.11 -0.29 -14.28 16 11 C 0.11 2.13 5.18 -4.04 -0.02 2.11 16 12 C 0.14 2.71 3.34 -66.95 -0.22 2.49 16 13 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 14 C -0.12 -1.87 6.48 -24.90 -0.16 -2.04 16 15 C -0.13 -2.10 7.09 -24.58 -0.17 -2.28 16 16 C 0.11 2.39 4.73 -2.53 -0.01 2.37 16 17 N -0.60 -13.82 2.87 -162.57 -0.47 -14.29 16 18 C -0.24 -6.42 8.87 -15.06 -0.13 -6.55 16 19 H 0.09 2.58 6.55 -52.48 -0.34 2.24 16 20 C 0.03 0.94 5.45 -17.43 -0.09 0.84 16 21 N -0.90 -27.12 13.97 55.49 0.78 -26.34 16 22 Si 0.88 22.99 24.33 -169.99 -4.14 18.85 16 23 H -0.29 -7.16 6.68 56.52 0.38 -6.78 16 24 H -0.30 -8.18 7.11 56.52 0.40 -7.78 16 25 H -0.28 -7.31 6.76 56.52 0.38 -6.93 16 26 C -0.12 -1.93 9.54 -39.44 -0.38 -2.31 16 27 C -0.07 -0.97 9.88 -39.26 -0.39 -1.36 16 28 C -0.08 -1.22 5.75 -106.72 -0.61 -1.84 16 29 C -0.11 -1.30 9.37 -39.52 -0.37 -1.67 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.07 0.45 8.08 -51.93 -0.42 0.03 16 32 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 33 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 34 H 0.14 2.23 8.06 -52.49 -0.42 1.80 16 35 H 0.42 9.08 5.25 -40.82 -0.21 8.86 16 36 H 0.06 1.38 8.13 -51.93 -0.42 0.96 16 37 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.07 1.00 7.85 -51.93 -0.41 0.59 16 39 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 42 H 0.02 0.51 5.45 -51.93 -0.28 0.22 16 43 H 0.06 1.30 7.17 -51.93 -0.37 0.93 16 44 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 45 H 0.15 2.12 7.60 -52.49 -0.40 1.72 16 46 H 0.14 1.32 8.06 -52.49 -0.42 0.89 16 47 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 378.02 15.07 5.70 5.70 Total: -1.00 -33.13 378.02 -9.91 -43.04 By element: Atomic # 1 Polarization: 14.95 SS G_CDS: -6.69 Total: 8.26 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -4.81 Total: -0.48 kcal Atomic # 7 Polarization: -63.13 SS G_CDS: -0.06 Total: -63.18 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.09 Total: -12.19 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.14 Total: 18.85 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.13 -9.91 -43.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028016467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.360 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds